mRNA_F-serratus_M_contig7162.18371.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7162.18371.1
Unique NamemRNA_F-serratus_M_contig7162.18371.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7162.18371.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7162contigF-serratus_M_contig7162:15927..17187 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size213
Cds size213
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932194.4544382-CDS-F-serratus_M_contig7162:15926..159871622932194.4544382-CDS-F-serratus_M_contig7162:15926..15987Fucus serratus maleCDSF-serratus_M_contig7162 15927..15987 +
1690964193.0794182-CDS-F-serratus_M_contig7162:15926..159871690964193.0794182-CDS-F-serratus_M_contig7162:15926..15987Fucus serratus maleCDSF-serratus_M_contig7162 15927..15987 +
1622932194.4828248-CDS-F-serratus_M_contig7162:17035..171871622932194.4828248-CDS-F-serratus_M_contig7162:17035..17187Fucus serratus maleCDSF-serratus_M_contig7162 17036..17187 +
1690964193.0918705-CDS-F-serratus_M_contig7162:17035..171871690964193.0918705-CDS-F-serratus_M_contig7162:17035..17187Fucus serratus maleCDSF-serratus_M_contig7162 17036..17187 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7162.18371.1prot_F-serratus_M_contig7162.18371.1Fucus serratus malepolypeptideF-serratus_M_contig7162 15927..17187 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7162.18371.1

>prot_F-serratus_M_contig7162.18371.1 ID=prot_F-serratus_M_contig7162.18371.1|Name=mRNA_F-serratus_M_contig7162.18371.1|organism=Fucus serratus male|type=polypeptide|length=71bp
MESAAGTVENMERRMKHMIKGGLVQYQYRYQYYGSASASHSLKGSSWRWN
GREFDLASVFIRRLDSQVII*
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mRNA from alignment at F-serratus_M_contig7162:15927..17187+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7162.18371.1 ID=mRNA_F-serratus_M_contig7162.18371.1|Name=mRNA_F-serratus_M_contig7162.18371.1|organism=Fucus serratus male|type=mRNA|length=1261bp|location=Sequence derived from alignment at F-serratus_M_contig7162:15927..17187+ (Fucus serratus male)
ATGGAATCAGCAGCAGGCACGGTCGAAAACATGGAACGAAGAATGAAGCA
CATGATAAAAGGCGAGGGGAATAATAGAATAAAAGTATGTTTCACTAAGA
CACAATACAAGATTTGCTGTACCTCCAGAACGGTATGATATCTGCGGAAA
AATAACAGCAGACACTAAAATACTCGTAGCTTTTGTCGACCGCACTGTGA
AGTATTTGCCGTTATGTTTAGGATATTTTCCTGCAGGTAGACTCTCAACC
GATACAGACAGGCAAACCTGATATAAGCTACCGTATAGTAAGCTCTTGAA
CAGGTAAGGTGCACGGGTGTCCACACCCCGCCATTCCGCGCAAAAGTTGT
TATTATGGGTGAACGTAGGATTCGAAGCGATGTACATTCAATATATTTTC
GTGGACACTAAAACCAGGTAGTTTGAACGCCTCAAAGGGGTTTCCGGTTC
ATTTGTTCGAACACAAGCCAGTATTATAGTATTATTTCGATTGAGATTGA
AGGGCTACTTGCTGTAAACGGTAGGTAGGGTACTGTACATACAGTTATTT
ATAGTGCTCCCAAGATTCGAAAGACGCTACAGGCGAGATGTAGCCAGCCT
CCTACAACCAAAACACTGCATAGGAATCTAGAATCTATCGTTGTGTCAAT
CGTTATTTGGAGATTTGGAGATTTGGAGATCCGAGCGTTAGGTCCCACAG
GGGCGAAATGTTCAGGTGCTGTCTCTGCTGAAATGTTGGATGTAACCCTG
CAGTTAGAGGCAGTGTGCATCTGCTCTCCGCCCACCTACCTCGGGGTGTG
AGATGTGAACGGTTGGTTGTATCGCTACAGCGCTGTTCTTCTCCACCTTA
TAGCTCCTCCCCCGACAAGGCCTCAGGTACATCTGCTGGGAGGCATTTTT
TTGCTTTTCACATGAGAAAATGTGTGGTCATTGTCGGGTTAAACCGATCT
CCAACAGCGATTTAGTAAATCGGTGATCACTCTTGAAACTATTAGTGTAT
CAGGTATTGATGATAGATTAGAACAAAGCTAAATACTGTAGTCGCTCAGC
TGTCTGCTGACCCTGTCGCCGTAATTCCCTTACATATCTGTCTTTGTATG
ATACTACAGGTGGACTTGTACAGTACCAGTACCGGTATCAATATTATGGA
TCAGCCAGCGCCTCGCACAGTCTTAAGGGGTCATCCTGGAGATGGAACGG
GCGCGAATTTGATTTAGCATCTGTTTTCATACGAAGGCTGGACTCACAGG
TAATCATTTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig7162:15927..17187+

>mRNA_F-serratus_M_contig7162.18371.1 ID=mRNA_F-serratus_M_contig7162.18371.1|Name=mRNA_F-serratus_M_contig7162.18371.1|organism=Fucus serratus male|type=CDS|length=426bp|location=Sequence derived from alignment at F-serratus_M_contig7162:15927..17187+ (Fucus serratus male)
ATGGAATCAGCAGCAGGCACGGTCGAAAACATGGAACGAAGAATGAAGCA
CATGATAAAAGATGGAATCAGCAGCAGGCACGGTCGAAAACATGGAACGA
AGAATGAAGCACATGATAAAAGGTGGACTTGTACAGTACCAGTACCGGTA
TCAATATTATGGATCAGCCAGCGCCTCGCACAGTCTTAAGGGGTCATCCT
GGAGATGGAACGGGCGCGAATTTGATTTAGCATCTGTTTTCATACGAAGG
CTGGACTCACAGGTAATCATTTGAGTGGACTTGTACAGTACCAGTACCGG
TATCAATATTATGGATCAGCCAGCGCCTCGCACAGTCTTAAGGGGTCATC
CTGGAGATGGAACGGGCGCGAATTTGATTTAGCATCTGTTTTCATACGAA
GGCTGGACTCACAGGTAATCATTTGA
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