mRNA_F-serratus_M_contig7144.18359.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig7144.18359.1
Unique NamemRNA_F-serratus_M_contig7144.18359.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig7144.18359.1 vs. uniprot
Match: D7G4Q6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4Q6_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 2.540e-10
Identity = 152/272 (55.88%), Postives = 168/272 (61.76%), Query Frame = 1 
Query:    1 PSVPAGLRRFLEQHRPSQPEI--ANGSTGPQRPPS-----RVSFKSGQVYEGQL-RRHGA---MPFGWGRVTLAEGATYEGEWSGGRVHGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---GVFVDAAGGGERYEGXXXRGVRSGGGRLIQGWAEGGQ---GGENLPDLASSVSTDRFKDLAWYSGNFKDGLPHGEGAMGYGLATFC 765
            P +P  L  FLE HRP       + GS G           RV F  G  YEGQL RR G    +P GWG +T  +   Y+G W GG V   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                     GVFVD A  GER+ G    G+RSG G L+QG  E  +   GGE+  + A     +   +LAWYSGNF+ GLPHG+G M Y  ATFC
Sbjct:   75 PPIPLILHLFLENHRPRDVSALPSGGSRGSNAGDGSSSVHRVWFTGGLAYEGQLLRREGGEKRVPHGWGNLTFPDKGFYQGCWHGGVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGSHTRSYDGDWENDLPHGHGVFVDTA-EGERFCGAWRHGIRSGAGTLVQGRLEKEKRQKGGEDTGEEAERED-EASSELAWYSGNFEHGLPHGDGTMTYCGATFC 344
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7144.18359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G4Q6_ECTSI2.540e-1055.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7144contigF-serratus_M_contig7144:16526..17469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue6.6e-10
Seed eggNOG ortholog2880.D7G4Q6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size944
Cds size660
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7144.18359.1prot_F-serratus_M_contig7144.18359.1Fucus serratus malepolypeptideF-serratus_M_contig7144 16682..17341 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932192.1977143-UTR-F-serratus_M_contig7144:16525..166811622932192.1977143-UTR-F-serratus_M_contig7144:16525..16681Fucus serratus maleUTRF-serratus_M_contig7144 16526..16681 +
1690964192.248228-UTR-F-serratus_M_contig7144:16525..166811690964192.248228-UTR-F-serratus_M_contig7144:16525..16681Fucus serratus maleUTRF-serratus_M_contig7144 16526..16681 +
1622932192.2364163-UTR-F-serratus_M_contig7144:17341..174691622932192.2364163-UTR-F-serratus_M_contig7144:17341..17469Fucus serratus maleUTRF-serratus_M_contig7144 17342..17469 +
1690964192.275733-UTR-F-serratus_M_contig7144:17341..174691690964192.275733-UTR-F-serratus_M_contig7144:17341..17469Fucus serratus maleUTRF-serratus_M_contig7144 17342..17469 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932192.2175624-CDS-F-serratus_M_contig7144:16681..173411622932192.2175624-CDS-F-serratus_M_contig7144:16681..17341Fucus serratus maleCDSF-serratus_M_contig7144 16682..17341 +
1690964192.2675533-CDS-F-serratus_M_contig7144:16681..173411690964192.2675533-CDS-F-serratus_M_contig7144:16681..17341Fucus serratus maleCDSF-serratus_M_contig7144 16682..17341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig7144.18359.1

>prot_F-serratus_M_contig7144.18359.1 ID=prot_F-serratus_M_contig7144.18359.1|Name=mRNA_F-serratus_M_contig7144.18359.1|organism=Fucus serratus male|type=polypeptide|length=220bp
MPFGWGRVTLAEGATYEGEWSGGRVHGKGTLRLPNGNAYWGSWALGRKHG
LGTFVWADGSRHDGNYRAGMKSGFGTLHYASGAVFEGQFEADRRHGIGRL
ELPEGSSYVGEWERDVPHGFGVFVDAAGGGERYEGSWKRGVRSGGGRLIQ
GWAEGGQGGENLPDLASSVSTDRFKDLAWYSGNFKDGLPHGEGAMGYGLA
TFCGHVERGEWTGGRGCSI*
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mRNA from alignment at F-serratus_M_contig7144:16526..17469+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig7144.18359.1 ID=mRNA_F-serratus_M_contig7144.18359.1|Name=mRNA_F-serratus_M_contig7144.18359.1|organism=Fucus serratus male|type=mRNA|length=944bp|location=Sequence derived from alignment at F-serratus_M_contig7144:16526..17469+ (Fucus serratus male)
CCATCCGTTCCAGCCGGGCTGCGGCGCTTCCTCGAACAGCACCGACCCTC
ACAGCCCGAAATCGCGAACGGCAGCACCGGTCCGCAGCGGCCACCATCCC
GAGTCAGCTTCAAGTCTGGGCAAGTTTACGAGGGTCAGCTCCGCCGTCAC
GGTGCTATGCCGTTCGGTTGGGGGCGTGTTACTCTCGCGGAAGGGGCTAC
GTACGAGGGCGAGTGGTCGGGTGGTCGTGTCCATGGAAAGGGCACCCTCC
GTCTCCCCAACGGCAACGCTTACTGGGGATCGTGGGCGCTCGGCCGCAAA
CATGGACTGGGAACTTTCGTATGGGCAGACGGGTCACGCCATGACGGTAA
CTACAGGGCGGGGATGAAGAGCGGGTTTGGTACGCTGCACTATGCTAGCG
GCGCCGTTTTCGAGGGACAGTTCGAGGCCGACCGCAGGCACGGCATCGGC
CGCCTCGAGCTACCGGAGGGATCCTCGTATGTTGGCGAATGGGAAAGAGA
CGTCCCTCACGGGTTCGGGGTGTTCGTCGATGCCGCGGGTGGCGGGGAGC
GGTACGAGGGCAGCTGGAAAAGAGGAGTGAGATCCGGTGGAGGTCGGCTT
ATACAGGGATGGGCGGAAGGGGGACAGGGCGGTGAGAACCTGCCGGACCT
CGCATCGTCGGTGAGCACAGACCGTTTCAAAGATTTAGCGTGGTACTCCG
GCAACTTCAAGGATGGCCTGCCGCACGGCGAGGGGGCGATGGGCTACGGT
CTCGCCACGTTCTGTGGGCACGTGGAACGCGGAGAGTGGACTGGTGGAAG
GGGGTGCTCGATCTAGGTGGTGGGAGGGGAAGCTTTGAGGGGACGTTCAG
CAAAGGCCTTCCGAGGGGCAACGGAAGTTGGCGCTGGGAAAAATCCGGTG
TCGAGATGGATTGTACCTTCGAGGAGGGCTACACCTCGAGTATC
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Coding sequence (CDS) from alignment at F-serratus_M_contig7144:16526..17469+

>mRNA_F-serratus_M_contig7144.18359.1 ID=mRNA_F-serratus_M_contig7144.18359.1|Name=mRNA_F-serratus_M_contig7144.18359.1|organism=Fucus serratus male|type=CDS|length=1320bp|location=Sequence derived from alignment at F-serratus_M_contig7144:16526..17469+ (Fucus serratus male)
ATGCCGTTCGGTTGGGGGCGTGTTACTCTCGCGGAAGGGGCTACGTACGA
GGGCGAGTGGTCGGGTGGTCGTGTCCATGGAAAGGGCACCCTCCGTCTCC
CCAACGGCAACGCTTACTGGGGATCGTGGGCGCTCGGCCGCAAACATGGA
CTGGGAACTTTCGTATGGGCAGACGGGTCACGCCATGACGGTAACTACAG
GGCGGGGATGAAGAGCGGGTTTGGTACGCTGCACTATGCTAGCGGCGCCG
TTTTCGAGGGACAGTTCGAGGCCGACCGCAGGCACGGCATCGGCCGCCTC
GAGCTACCGGAGGGATCCTCGTATGTTGGCGAATGGGAAAGAGACGTCCC
TCACGGGTTCGGGGTGTTCGTCGATGCCGCGGGTGGCGGGGAGCGGTACG
AGGGCAGCTGGAAAAGAGGAGTGAGATCCGGTGGAGGTCGGCTTATACAG
GGATGGGCGGAAGGGGGACAGGGCGGTGAGAACCTGCCGGACCTCGCATC
GTCGGTGAGCACAGACCGTTTCAAAGATTTAGCGTGGTACTCCGGCAACT
TCAAGGATGGCCTGCCGCACGGCGAGGGGGCGATGGGCTACGGTCTCGCC
ACGTTCTGTGGGCACGTGGAACGCGGAGAGTGGACTGGTGGAAGGGGGTG
CTCGATCTAGATGCCGTTCGGTTGGGGGCGTGTTACTCTCGCGGAAGGGG
CTACGTACGAGGGCGAGTGGTCGGGTGGTCGTGTCCATGGAAAGGGCACC
CTCCGTCTCCCCAACGGCAACGCTTACTGGGGATCGTGGGCGCTCGGCCG
CAAACATGGACTGGGAACTTTCGTATGGGCAGACGGGTCACGCCATGACG
GTAACTACAGGGCGGGGATGAAGAGCGGGTTTGGTACGCTGCACTATGCT
AGCGGCGCCGTTTTCGAGGGACAGTTCGAGGCCGACCGCAGGCACGGCAT
CGGCCGCCTCGAGCTACCGGAGGGATCCTCGTATGTTGGCGAATGGGAAA
GAGACGTCCCTCACGGGTTCGGGGTGTTCGTCGATGCCGCGGGTGGCGGG
GAGCGGTACGAGGGCAGCTGGAAAAGAGGAGTGAGATCCGGTGGAGGTCG
GCTTATACAGGGATGGGCGGAAGGGGGACAGGGCGGTGAGAACCTGCCGG
ACCTCGCATCGTCGGTGAGCACAGACCGTTTCAAAGATTTAGCGTGGTAC
TCCGGCAACTTCAAGGATGGCCTGCCGCACGGCGAGGGGGCGATGGGCTA
CGGTCTCGCCACGTTCTGTGGGCACGTGGAACGCGGAGAGTGGACTGGTG
GAAGGGGGTGCTCGATCTAG
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