mRNA_F-serratus_M_contig71.18293.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig71.18293.1 vs. uniprot
Match: A0A6H5KUQ8_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUQ8_9PHAE) HSP 1 Score: 212 bits (539), Expect = 2.530e-60 Identity = 139/268 (51.87%), Postives = 163/268 (60.82%), Query Frame = 1
Query: 139 GASNRGKSSIGSKTSGGLVKGPWTKEEDQKIIDCITQNITKWSEIAERVEGRVGKQCRERWFNHLDPSLKKSSWTLTEDEILVQGQARFGNSWTKIAKLLPGRSENAVKNRWNSAARKKGNRAA--RLASKMNNALPTNGAGRPEYMISQVSTSPEQGVEHAQYFTMPPSFYPARHIRPQ----AAPYAGWPAPSVDMLGSVRLNTQ-----VPQSILRALPTQHR-RDQRSPGGEPQRTLGPEILPE---QGYGHLAADAERSYDQP 897
G N+ KS+ + G LVKGPWT EEDQ IIDCI + +T+WSEIAERVEGRVGKQCRERWFNHLDP+LKKSSWT EDEILVQGQARFGNSWTKIAKLLPGRSENAVKNRWNSAARKK ++ R++ N A+P S+ T + QY MP ARH+ PQ AAP G P +DM S Q +P L +P Q + Q+ P E R G L E + YG +A A++ Y QP
Sbjct: 181 GDENKEKSTARCQAEGALVKGPWTTEEDQIIIDCINEKMTRWSEIAERVEGRVGKQCRERWFNHLDPTLKKSSWTPEEDEILVQGQARFGNSWTKIAKLLPGRSENAVKNRWNSAARKKSTTSSQRRVSEWRNVAMP-----------SEARTGGQM-----QYVMMPS----ARHMNPQLTPAAAPMMGTTIPIMDMPRSPTCLLQHCPGIMPIYPLHGMPVQQQWPSQQIPLLESSRFPGSNGLQELHARLYGRMAL-AQQMYGQP 427
BLAST of mRNA_F-serratus_M_contig71.18293.1 vs. uniprot
Match: A0A7S2RZ51_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RZ51_9STRA) HSP 1 Score: 184 bits (466), Expect = 1.080e-48 Identity = 82/103 (79.61%), Postives = 91/103 (88.35%), Query Frame = 1
Query: 187 GLVKGPWTKEEDQKIIDCITQNITKWSEIAERVEGRVGKQCRERWFNHLDPSLKKSSWTLTEDEILVQGQARFGNSWTKIAKLLPGRSENAVKNRWNSAARKK 495
GLVKGPWTKEEDQ IIDCI ITKWSEIAER+ GR+GKQCRERWFNHLDPSLKK WT ED +LV+ Q+++GNSWTKIAKLLPGRSENAVKNRWNSA R++
Sbjct: 305 GLVKGPWTKEEDQIIIDCIEAGITKWSEIAERIPGRIGKQCRERWFNHLDPSLKKGGWTEEEDAVLVEAQSKWGNSWTKIAKLLPGRSENAVKNRWNSATRRR 407
BLAST of mRNA_F-serratus_M_contig71.18293.1 vs. uniprot
Match: A0A5A8DBZ9_CAFRO (Uncharacterized protein n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DBZ9_CAFRO) HSP 1 Score: 167 bits (424), Expect = 2.720e-45 Identity = 73/103 (70.87%), Postives = 84/103 (81.55%), Query Frame = 1
Query: 187 GLVKGPWTKEEDQKIIDCITQNITKWSEIAERVEGRVGKQCRERWFNHLDPSLKKSSWTLTEDEILVQGQARFGNSWTKIAKLLPGRSENAVKNRWNSAARKK 495
GLVKGPWT EEDQ I++CI ITKWSEI+ER+ GR+GKQCRERWFNHLDPS+KK W+ ED IL + Q GN W +IAKLLPGRSEN+VKNRWNSA R+K
Sbjct: 59 GLVKGPWTTEEDQVIVNCINAGITKWSEISERIPGRIGKQCRERWFNHLDPSIKKDPWSAEEDRILEEAQCSIGNKWCEIAKLLPGRSENSVKNRWNSAMRRK 161
BLAST of mRNA_F-serratus_M_contig71.18293.1 vs. uniprot
Match: A0A7S2SVF3_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVF3_9STRA) HSP 1 Score: 166 bits (421), Expect = 1.210e-44 Identity = 75/102 (73.53%), Postives = 85/102 (83.33%), Query Frame = 1
Query: 187 GLVKGPWTKEEDQKIIDCITQNITKWSEIAERVEGRVGKQCRERWFNHLDPSLKKSSWTLTEDEILVQGQARFGNSWTKIAKLLPGRSENAVKNRWNSAARK 492
GLVKG WTKEEDQ IIDCI I +WSEIAE + GRVGKQ RERWFNHLDP++KK SWT ED IL QAR+GNSWTKIA+LLPGR+EN +KNRWNSA+R+
Sbjct: 89 GLVKGTWTKEEDQIIIDCIEAGINRWSEIAEYIPGRVGKQARERWFNHLDPTIKKGSWTDEEDAILTVAQARWGNSWTKIARLLPGRAENTIKNRWNSASRR 190
BLAST of mRNA_F-serratus_M_contig71.18293.1 vs. uniprot
Match: F0Y4D5_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4D5_AURAN) HSP 1 Score: 154 bits (388), Expect = 1.830e-43 Identity = 68/105 (64.76%), Postives = 86/105 (81.90%), Query Frame = 1
Query: 187 GLVKGPWTKEEDQKIIDCITQNITKWSEIAERVEGRVGKQCRERWFNHLDPSLKKSSWTLTEDEILVQGQARFGNSWTKIAKLLPGRSENAVKNRWNSAARKKGN 501
GLVKG +T+EED+ II+C+ + +W +IAER+ GR+GKQCRERW NHLDP+LKK WT ED ILV+ Q RFGN+WTKIA+LLPGR+E+AVKNRWNSA ++ N
Sbjct: 17 GLVKGAFTEEEDKIIIECMREGGLRWMQIAERIPGRIGKQCRERWTNHLDPNLKKGGWTREEDAILVEAQQRFGNAWTKIAELLPGRAESAVKNRWNSAFYRRNN 121
BLAST of mRNA_F-serratus_M_contig71.18293.1 vs. uniprot
Match: A0A2R5G768_9STRA (Transcription factor MYB3R-4 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G768_9STRA) HSP 1 Score: 164 bits (416), Expect = 4.180e-42 Identity = 73/103 (70.87%), Postives = 85/103 (82.52%), Query Frame = 1
Query: 187 GLVKGPWTKEEDQKIIDCITQNITKWSEIAERVEGRVGKQCRERWFNHLDPSLKKSSWTLTEDEILVQGQARFGNSWTKIAKLLPGRSENAVKNRWNSAARKK 495
GLVKGPWT+EED I CI + ITKWSEIAER+ GR+GKQCRERWFNHLDP++ S+WT E+++LV QA FGN W +IAKLLPGR ENAVKNRWNSA R+K
Sbjct: 223 GLVKGPWTEEEDNMIRACIERKITKWSEIAERIPGRIGKQCRERWFNHLDPTIDHSAWTEEEEKVLVTAQATFGNRWCEIAKLLPGRPENAVKNRWNSAIRRK 325
BLAST of mRNA_F-serratus_M_contig71.18293.1 vs. uniprot
Match: W7TBR6_9STRA (Myb-related 3r-1-like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBR6_9STRA) HSP 1 Score: 164 bits (414), Expect = 5.020e-42 Identity = 71/100 (71.00%), Postives = 84/100 (84.00%), Query Frame = 1
Query: 187 GLVKGPWTKEEDQKIIDCITQNITKWSEIAERVEGRVGKQCRERWFNHLDPSLKKSSWTLTEDEILVQGQARFGNSWTKIAKLLPGRSENAVKNRWNSAA 486
GLVKGPW +EED I+ C+ +TKWSEIAER+ GR+GKQCRERW NHLDPS+ KS+W+L ED+ L+ GQAR GN+W KIA LLPGRSEN+VKNRWNSAA
Sbjct: 181 GLVKGPWLEEEDAVILQCMRSGLTKWSEIAERIPGRLGKQCRERWLNHLDPSVSKSAWSLEEDKALLAGQARHGNAWAKIADLLPGRSENSVKNRWNSAA 280
BLAST of mRNA_F-serratus_M_contig71.18293.1 vs. uniprot
Match: A0A7S3LND3_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LND3_9STRA) HSP 1 Score: 155 bits (393), Expect = 5.640e-42 Identity = 69/105 (65.71%), Postives = 80/105 (76.19%), Query Frame = 1
Query: 187 GLVKGPWTKEEDQKIIDCITQNITKWSEIAERVEGRVGKQCRERWFNHLDPSLKKSSWTLTEDEILVQGQARFGNSWTKIAKLLPGRSENAVKNRWNSAARKKGN 501
GLVKGPWTKEED + CI I KWSEIA V GR+GKQCRERWFNHLDP++ K SWT EDE L + QA +GN W+ IA L+PGR+ENAVKNRWN R++GN
Sbjct: 58 GLVKGPWTKEEDDTVRRCIETGIKKWSEIASYVPGRIGKQCRERWFNHLDPTILKGSWTKEEDEKLFKAQAEYGNRWSFIATLIPGRTENAVKNRWNGTKRRRGN 162
BLAST of mRNA_F-serratus_M_contig71.18293.1 vs. uniprot
Match: A0A2R5GBT4_9STRA (Transcription factor MYB3R-2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GBT4_9STRA) HSP 1 Score: 162 bits (411), Expect = 6.370e-42 Identity = 71/103 (68.93%), Postives = 83/103 (80.58%), Query Frame = 1
Query: 187 GLVKGPWTKEEDQKIIDCITQNITKWSEIAERVEGRVGKQCRERWFNHLDPSLKKSSWTLTEDEILVQGQARFGNSWTKIAKLLPGRSENAVKNRWNSAARKK 495
GL+KGPWTKEED I++ I +TKWSEIA + GR+GKQCRERWFNHLDPS+KK WT ED ILV+ Q + GN W +IAK+LPGRSENAVKNRWNSA R+K
Sbjct: 42 GLIKGPWTKEEDDTIMEAIESGVTKWSEIATLIPGRIGKQCRERWFNHLDPSIKKGGWTEEEDRILVEYQEKLGNRWCEIAKVLPGRSENAVKNRWNSAMRRK 144
BLAST of mRNA_F-serratus_M_contig71.18293.1 vs. uniprot
Match: A0A7S4DB75_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB75_HETAK) HSP 1 Score: 154 bits (388), Expect = 1.860e-41 Identity = 65/99 (65.66%), Postives = 80/99 (80.81%), Query Frame = 1
Query: 187 GLVKGPWTKEEDQKIIDCITQNITKWSEIAERVEGRVGKQCRERWFNHLDPSLKKSSWTLTEDEILVQGQARFGNSWTKIAKLLPGRSENAVKNRWNSA 483
GLVKG WTKEED I+ C+ I KWS+IAER+ GR+GKQ RERWFNHLDP LKK W+ ED +L + QAR+GN+WTKIA+LLPGRS+N++KN WNS+
Sbjct: 130 GLVKGAWTKEEDAVIVACMESGIKKWSKIAERIPGRIGKQVRERWFNHLDPHLKKGGWSPEEDAVLAEAQARWGNAWTKIARLLPGRSDNSIKNHWNSS 228 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig71.18293.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig71.18293.1 >prot_F-serratus_M_contig71.18293.1 ID=prot_F-serratus_M_contig71.18293.1|Name=mRNA_F-serratus_M_contig71.18293.1|organism=Fucus serratus male|type=polypeptide|length=299bp AGQEEKGEGKEGDTSEQGEGDKGTTNANQLVEVQGGGQGRDTKPTDGASNback to top mRNA from alignment at F-serratus_M_contig71:499519..501942- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig71.18293.1 ID=mRNA_F-serratus_M_contig71.18293.1|Name=mRNA_F-serratus_M_contig71.18293.1|organism=Fucus serratus male|type=mRNA|length=2424bp|location=Sequence derived from alignment at F-serratus_M_contig71:499519..501942- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig71:499519..501942- >mRNA_F-serratus_M_contig71.18293.1 ID=mRNA_F-serratus_M_contig71.18293.1|Name=mRNA_F-serratus_M_contig71.18293.1|organism=Fucus serratus male|type=CDS|length=1794bp|location=Sequence derived from alignment at F-serratus_M_contig71:499519..501942- (Fucus serratus male)back to top |