prot_F-serratus_M_contig7007.18212.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig7007.18212.1
Unique Nameprot_F-serratus_M_contig7007.18212.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length159
Homology
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BLAST of mRNA_F-serratus_M_contig7007.18212.1 vs. uniprot
Match: F0W6E8_9STRA (Putative polyprotein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W6E8_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.100e-7
Identity = 35/118 (29.66%), Postives = 62/118 (52.54%), Query Frame = 0 
Query:   40 MMEVDRLAGDLHRLGDKSVTKLRKCVIIVSGLSADFKMECRILENNRDGLNRAEIERVVGSQYNRLHRQQQDSKVLSASRGTIAANREKGKNRRLYNKFDGKCFNCGKKGHRAVDCRS 157
            MM+ D+L  ++  + D  +      VI++  L  DF    RILE+   G++    +  +  ++ R+  ++     L A+RG I+  + +     L  +F+GKCF CGK+GHR  +CR+
Sbjct:    4 MMKFDKLTMEIAAMED-GLNDQEMIVILLGSLPVDFDPIVRILES-MPGIDLISAKGTLQREWERMQNRESSEVALQATRGRISKKKYQRHPGTLGEEFNGKCFQCGKRGHRKNECRT 119
[Close]
BLAST of mRNA_F-serratus_M_contig7007.18212.1 vs. uniprot
Match: F0X0S7_9STRA (Putative polyprotein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X0S7_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.090e-7
Identity = 34/118 (28.81%), Postives = 61/118 (51.69%), Query Frame = 0 
Query:   40 MMEVDRLAGDLHRLGDKSVTKLRKCVIIVSGLSADFKMECRILENNRDGLNRAEIERVVGSQYNRLHRQQQDSKVLSASRGTIAANREKGKNRRLYNKFDGKCFNCGKKGHRAVDCRS 157
            MM+ D+L  ++  +GD  +      VI++  L  +F    RILEN   G++    +     ++ R+  ++     L  +RG I+  + +     +  +F+GKCF CGK+GHR  +CR+
Sbjct:    4 MMKFDKLTMEMAAMGD-GLNDQEMLVILLGSLPLNFDPIVRILENIT-GIDLMSAKETPRREWGRIKNRESSEVTLEVTRGRISKKKYQRNPGTVGEEFNGKCFQCGKRGHRKYECRT 119
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig7007.18212.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
F0W6E8_9STRA1.100e-729.66Putative polyprotein n=1 Tax=Albugo laibachii Nc14... [more]
F0X0S7_9STRA3.090e-728.81Putative polyprotein n=1 Tax=Albugo laibachii Nc14... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 141..157
e-value: 1.2E-4
score: 31.4
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 140..156
e-value: 2.6E-6
score: 27.2
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 141..157
score: 10.411
NoneNo IPR availableGENE3D4.10.60.10coord: 75..159
e-value: 1.2E-5
score: 26.9
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 128..157

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig7007contigF-serratus_M_contig7007:10239..10715 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig7007.18212.1mRNA_F-serratus_M_contig7007.18212.1Fucus serratus malemRNAF-serratus_M_contig7007 10239..10715 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig7007.18212.1 ID=prot_F-serratus_M_contig7007.18212.1|Name=mRNA_F-serratus_M_contig7007.18212.1|organism=Fucus serratus male|type=polypeptide|length=159bp
EARRNLELHYKAKGAREIIRLSHEINGKTMEPGSDPFKFMMEVDRLAGDL
HRLGDKSVTKLRKCVIIVSGLSADFKMECRILENNRDGLNRAEIERVVGS
QYNRLHRQQQDSKVLSASRGTIAANREKGKNRRLYNKFDGKCFNCGKKGH
RAVDCRSAK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf