mRNA_F-serratus_M_contig69.17974.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig69.17974.1
Unique NamemRNA_F-serratus_M_contig69.17974.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig69.17974.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig69contigF-serratus_M_contig69:328670..331144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1942
Cds size1263
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig69.17974.1prot_F-serratus_M_contig69.17974.1Fucus serratus malepolypeptideF-serratus_M_contig69 329234..331029 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932103.6910431-UTR-F-serratus_M_contig69:328669..3292331622932103.6910431-UTR-F-serratus_M_contig69:328669..329233Fucus serratus maleUTRF-serratus_M_contig69 328670..329233 -
1690964148.3689644-UTR-F-serratus_M_contig69:328669..3292331690964148.3689644-UTR-F-serratus_M_contig69:328669..329233Fucus serratus maleUTRF-serratus_M_contig69 328670..329233 -
1622932103.7452345-UTR-F-serratus_M_contig69:331029..3311441622932103.7452345-UTR-F-serratus_M_contig69:331029..331144Fucus serratus maleUTRF-serratus_M_contig69 331030..331144 -
1690964148.4038727-UTR-F-serratus_M_contig69:331029..3311441690964148.4038727-UTR-F-serratus_M_contig69:331029..331144Fucus serratus maleUTRF-serratus_M_contig69 331030..331144 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932103.717573-CDS-F-serratus_M_contig69:329233..3295541622932103.717573-CDS-F-serratus_M_contig69:329233..329554Fucus serratus maleCDSF-serratus_M_contig69 329234..329554 -
1690964148.3792663-CDS-F-serratus_M_contig69:329233..3295541690964148.3792663-CDS-F-serratus_M_contig69:329233..329554Fucus serratus maleCDSF-serratus_M_contig69 329234..329554 -
1622932103.7318063-CDS-F-serratus_M_contig69:330087..3310291622932103.7318063-CDS-F-serratus_M_contig69:330087..331029Fucus serratus maleCDSF-serratus_M_contig69 330088..331029 -
1690964148.3940384-CDS-F-serratus_M_contig69:330087..3310291690964148.3940384-CDS-F-serratus_M_contig69:330087..331029Fucus serratus maleCDSF-serratus_M_contig69 330088..331029 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig69.17974.1

>prot_F-serratus_M_contig69.17974.1 ID=prot_F-serratus_M_contig69.17974.1|Name=mRNA_F-serratus_M_contig69.17974.1|organism=Fucus serratus male|type=polypeptide|length=421bp
MGKYIPASGDEGDGDGSIHDEAVVEPSTFEPDGTAATLAAAEGAPRESSV
SLGHGIGVSAEPIAARGDESPGDGAETAAGQFSVARSISARAPLETIGAG
WTGTNEDNQDDRETVPGAAAPPSTTSEDRVQGADMGKCIPAPGDEGDSDG
SIHDEAVVEPSTPEPDGTAATLAAVEGAPRESSVSPGHGIGVIAESNAAR
GDESPGDGAERAAGQKEGAATGGLGGDAVPLVLEDLAEEMVAAFGVENEE
DDYYRYEGDDEDYYDDDDDDDDIDFFNYLSKYETESSKDVGQTTDARVWE
GLAAALKVELEEKKARIFDLSIENRRLRREAADWAMQCAYQKEQNHHEQL
ERQQQQEQQQQRWWQQWWEQLWWGQGQHEDVEISLHERVGMRETEPEPEG
GILVRMSRGIPRVAHPYWEH*
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mRNA from alignment at F-serratus_M_contig69:328670..331144-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig69.17974.1 ID=mRNA_F-serratus_M_contig69.17974.1|Name=mRNA_F-serratus_M_contig69.17974.1|organism=Fucus serratus male|type=mRNA|length=2475bp|location=Sequence derived from alignment at F-serratus_M_contig69:328670..331144- (Fucus serratus male)
GACCGTCGGGGCCGACTGGACGGGCACGAACGAGGACAACCAAGACGAAC
TAGGAACCGTGCCTGGAGCCGCCGCTCCGCACTCGACATCGGAGGACCGC
GTGCAAGGAGCGGACATGGGCAAGTATATTCCCGCCTCCGGCGACGAAGG
AGATGGCGATGGCAGCATTCACGACGAAGCCGTCGTTGAGCCTTCCACTT
TCGAGCCTGATGGCACAGCGGCCACGTTAGCGGCGGCTGAAGGTGCCCCG
AGGGAGTCGTCAGTGAGCCTCGGGCACGGAATCGGAGTCAGCGCCGAACC
TATTGCTGCTCGTGGAGACGAGTCTCCTGGAGACGGTGCAGAAACGGCGG
CGGGACAGTTCTCCGTGGCTCGCAGCATCTCGGCGCGGGCTCCCCTCGAG
ACCATTGGGGCCGGCTGGACGGGCACGAACGAGGACAACCAAGACGATCG
AGAAACCGTGCCTGGAGCCGCCGCTCCGCCCTCGACGACATCGGAGGACC
GCGTGCAAGGGGCGGACATGGGCAAGTGTATTCCCGCCCCCGGTGACGAA
GGAGATAGCGATGGCAGTATTCACGACGAGGCCGTCGTTGAGCCTTCCAC
CCCCGAGCCTGATGGCACAGCGGCCACGTTAGCGGCGGTTGAAGGTGCCC
CGAGGGAGTCGTCAGTGAGCCCGGGACACGGAATCGGAGTCATCGCCGAA
TCTAATGCTGCTCGTGGAGACGAGTCTCCTGGAGACGGTGCAGAAAGGGC
GGCGGGACAAAAAGAGGGCGCCGCCACGGGTGGTCTCGGTGGGGATGCCG
TTCCTTTGGTCTTGGAGGATCTCGCCGAAGAAATGGTTGCCGCGTTCGGG
GTGGAGAACGAGGAGGATGATTACTACCGTTACGAGGGAGATGACGAAGA
TTACTATGACGATGATGACGATGACGACGATATCGATTTCTTCAATTACT
TGAGTAAGTATGAGACGGAAAGTAGCAAGGACGTGGGGCAGACAACCGAT
GCTCGCGTCTGGGAAGGCTTGGCGGCTGCGCTAAAGGTGGAGCTCGAGGA
GAAAAAGGTGAGCGTTGCGTACGGCACGCGCGGGGAATTTTGCGTTCTTG
CGATATCGAACGCACCCGGCGTTTGTACGCCTTTTTTTTTTGGATTTGGC
GCGGGCGTCCGTGTCCATTCATTCAAAGGCTATGGGGCTGCAAGAGTAGT
ACGTGCGTGCAACAAGATGCGCGTCTTGTTTTGGAAAAAGAGAGAAGCAT
AGCTGTAAGTGTGGCGCATGGAGACACGAGAAGGGCGTGACGACGGATCA
ATTTACCCATGAGGTGATAGTGCTGTAGCCCTCAGATACTCTAGTTGTTT
GCCGTTCCATGCAGCGCGCCAAGATGAAAGGTAACTCAACTCCGCTTACT
TTCGACGACGTAGTTGTTCTAACAAGGATTGGTTGAAGCCCAATATTCTG
GTGAATGTGATGGGCGACCTACAATAGCAACGCACCCACATCTTTTCCGA
TAACGCCTCGGTCTCTAATGAAAATATTTCATTCTAACATAAGTCAGTTG
CCTGTACTGTCATTGTTGTATGTCTTTTCGCCACCCGAAGGCTCGCATTT
TTGACCTCAGCATCGAGAATCGGCGCCTGCGGAGAGAAGCGGCCGATTGG
GCAATGCAGTGCGCCTACCAGAAGGAGCAAAACCACCATGAACAGCTTGA
GCGGCAGCAGCAGCAGGAGCAGCAGCAGCAAAGGTGGTGGCAGCAGTGGT
GGGAACAGCTGTGGTGGGGACAGGGACAGCATGAGGACGTTGAAATATCA
CTGCACGAGAGGGTTGGAATGCGCGAGACAGAGCCGGAGCCGGAAGGGGG
CATTCTCGTTAGGATGTCCCGCGGCATCCCGCGGGTGGCTCACCCGTACT
GGGAACACTGAACCGCCGTTTCCCATCCGTATTTTTGTTTTTGCCTTAGA
GAGAGAGGGAATAGAGATACGTGTATTATACACAAAAAAGGACCATTTTG
TCGAGACTTTTGAAGTGACGCTGGTGCACGCGAGAGGTGCTGTAAAACTG
TCTGTCCACTCTTCATGATGCCACTGGGATCTGAAGCGTACTATTTGGCT
AATACTCTACTGTCACTACCTTACCGTATCAGTATAATAGCAGTAGCAGG
AGTCTACTCGCTTCATGTGGAGTAATACTGTAAGCGAGGTTGACATCATT
ATAGCAGGGACCCGGGTGTTGGTTTTTGTTTTGACACGGTCGTTTCTCTT
GCATACGATTATTAGACTAGGGCTATCGATAGAAACATAGAGTAATCGAG
GTTGCCAGGAGACGTTTTCGAAGATGTTGTAACCGTGGGAAGTCACTTCA
AACCTATTATAGAGGTAAGCATGAATTTGTCTTGGCAATGGATAAATACA
ACATGGAATCGATTGTTTTGCTCTCTTTCTTTATGCGTACGCGGTAACTA
TTAAATACCAAGTATTGATTCACCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig69:328670..331144-

>mRNA_F-serratus_M_contig69.17974.1 ID=mRNA_F-serratus_M_contig69.17974.1|Name=mRNA_F-serratus_M_contig69.17974.1|organism=Fucus serratus male|type=CDS|length=2526bp|location=Sequence derived from alignment at F-serratus_M_contig69:328670..331144- (Fucus serratus male)
ATGGGCAAGTATATTCCCGCCTCCGGCGACGAAGGAGATGGCGATGGCAG
CATTCACGACGAAGCCGTCGTTGAGCCTTCCACTTTCGAGCCTGATGGCA
CAGCGGCCACGTTAGCGGCGGCTGAAGGTGCCCCGAGGGAGTCGTCAGTG
AGCCTCGGGCACGGAATCGGAGTCAGCGCCGAACCTATTGCTGCTCGTGG
AGACGAGTCTCCTGGAGACGGTGCAGAAACGGCGGCGGGACAGTTCTCCG
TGGCTCGCAGCATCTCGGCGCGGGCTCCCCTCGAGACCATTGGGGCCGGC
TGGACGGGCACGAACGAGGACAACCAAGACGATCGAGAAACCGTGCCTGG
AGCCGCCGCTCCGCCCTCGACGACATCGGAGGACCGCGTGCAAGGGGCGG
ACATGGGCAAGTGTATTCCCGCCCCCGGTGACGAAGGAGATAGCGATGGC
AGTATTCACGACGAGGCCGTCGTTGAGCCTTCCACCCCCGAGCCTGATGG
CACAGCGGCCACGTTAGCGGCGGTTGAAGGTGCCCCGAGGGAGTCGTCAG
TGAGCCCGGGACACGGAATCGGAGTCATCGCCGAATCTAATGCTGCTCGT
GGAGACGAGTCTCCTGGAGACGGTGCAGAAAGGGCGGCGGGACAAAAAGA
GGGCGCCGCCACGGGTGGTCTCGGTGGGGATGCCGTTCCTTTGGTCTTGG
AGGATCTCGCCGAAGAAATGGTTGCCGCGTTCGGGGTGGAGAACGAGGAG
GATGATTACTACCGTTACGAGGGAGATGACGAAGATTACTATGACGATGA
TGACGATGACGACGATATCGATTTCTTCAATTACTTGAGTAAGTATGAGA
CGGAAAGTAGCAAGGACGTGGGGCAGACAACCGATGCTCGCGTCTGGGAA
GGCTTGGCGGCTGCGCTAAAGGTGGAGCTCGAGGAGAAAAAGATGGGCAA
GTATATTCCCGCCTCCGGCGACGAAGGAGATGGCGATGGCAGCATTCACG
ACGAAGCCGTCGTTGAGCCTTCCACTTTCGAGCCTGATGGCACAGCGGCC
ACGTTAGCGGCGGCTGAAGGTGCCCCGAGGGAGTCGTCAGTGAGCCTCGG
GCACGGAATCGGAGTCAGCGCCGAACCTATTGCTGCTCGTGGAGACGAGT
CTCCTGGAGACGGTGCAGAAACGGCGGCGGGACAGTTCTCCGTGGCTCGC
AGCATCTCGGCGCGGGCTCCCCTCGAGACCATTGGGGCCGGCTGGACGGG
CACGAACGAGGACAACCAAGACGATCGAGAAACCGTGCCTGGAGCCGCCG
CTCCGCCCTCGACGACATCGGAGGACCGCGTGCAAGGGGCGGACATGGGC
AAGTGTATTCCCGCCCCCGGTGACGAAGGAGATAGCGATGGCAGTATTCA
CGACGAGGCCGTCGTTGAGCCTTCCACCCCCGAGCCTGATGGCACAGCGG
CCACGTTAGCGGCGGTTGAAGGTGCCCCGAGGGAGTCGTCAGTGAGCCCG
GGACACGGAATCGGAGTCATCGCCGAATCTAATGCTGCTCGTGGAGACGA
GTCTCCTGGAGACGGTGCAGAAAGGGCGGCGGGACAAAAAGAGGGCGCCG
CCACGGGTGGTCTCGGTGGGGATGCCGTTCCTTTGGTCTTGGAGGATCTC
GCCGAAGAAATGGTTGCCGCGTTCGGGGTGGAGAACGAGGAGGATGATTA
CTACCGTTACGAGGGAGATGACGAAGATTACTATGACGATGATGACGATG
ACGACGATATCGATTTCTTCAATTACTTGAGTAAGTATGAGACGGAAAGT
AGCAAGGACGTGGGGCAGACAACCGATGCTCGCGTCTGGGAAGGCTTGGC
GGCTGCGCTAAAGGTGGAGCTCGAGGAGAAAAAGGCTCGCATTTTTGACC
TCAGCATCGAGAATCGGCGCCTGCGGAGAGAAGCGGCCGATTGGGCAATG
CAGTGCGCCTACCAGAAGGAGCAAAACCACCATGAACAGCTTGAGCGGCA
GCAGCAGCAGGAGCAGCAGCAGCAAAGGTGGTGGCAGCAGTGGTGGGAAC
AGCTGTGGTGGGGACAGGGACAGCATGAGGACGTTGAAATATCACTGCAC
GAGAGGGTTGGAATGCGCGAGACAGAGCCGGAGCCGGAAGGGGGCATTCT
CGTTAGGATGTCCCGCGGCATCCCGCGGGTGGCTCACCCGTACTGGGAAC
ACTGAGCTCGCATTTTTGACCTCAGCATCGAGAATCGGCGCCTGCGGAGA
GAAGCGGCCGATTGGGCAATGCAGTGCGCCTACCAGAAGGAGCAAAACCA
CCATGAACAGCTTGAGCGGCAGCAGCAGCAGGAGCAGCAGCAGCAAAGGT
GGTGGCAGCAGTGGTGGGAACAGCTGTGGTGGGGACAGGGACAGCATGAG
GACGTTGAAATATCACTGCACGAGAGGGTTGGAATGCGCGAGACAGAGCC
GGAGCCGGAAGGGGGCATTCTCGTTAGGATGTCCCGCGGCATCCCGCGGG
TGGCTCACCCGTACTGGGAACACTGA
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