mRNA_F-serratus_M_contig6810.17875.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig6810.17875.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 77.4 bits (189), Expect = 8.150e-15 Identity = 38/71 (53.52%), Postives = 52/71 (73.24%), Query Frame = 1
Query: 16 VYNQVARLKDKLVIGTKMLYKQKIGQDDKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAA 228
V+ +V R +D+ +IG+K ++K K G D +VEKYK RLVAQGF QVEG+ Y E ++P + SIR+LLA AA
Sbjct: 1026 VFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAA 1096
BLAST of mRNA_F-serratus_M_contig6810.17875.1 vs. uniprot
Match: A0A1C7MSU6_GRIFR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MSU6_GRIFR) HSP 1 Score: 72.0 bits (175), Expect = 6.320e-13 Identity = 35/71 (49.30%), Postives = 51/71 (71.83%), Query Frame = 1
Query: 16 VYNQVARLKDKLVIGTKMLYKQKIGQDDKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAA 228
+Y++V R +D+ V+G K +++ K G D ++EKYK R+VA+GF QVEGV YT+ ++P SIR LLA AA
Sbjct: 313 LYDEVERPRDRKVVGCKWVFRIKRGPDGEIEKYKARVVAKGFTQVEGVDYTDTFAPVTKFASIRALLALAA 383
BLAST of mRNA_F-serratus_M_contig6810.17875.1 vs. uniprot
Match: A0A235B279_9BACL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Paludifilum halophilum TaxID=1642702 RepID=A0A235B279_9BACL) HSP 1 Score: 65.5 bits (158), Expect = 2.490e-12 Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = 1
Query: 1 MVENCVYNQVARLKDKLVIGTKMLYKQKIGQDDKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAA 228
M +N ++ V R KDK VIGTK ++K K+ +D KV + K RLV +G+ Q EG+ Y E ++P +R LLA AA
Sbjct: 1 MEKNKIWTLVPRPKDKNVIGTKWVFKNKLNEDGKVSRNKARLVCKGYSQEEGIDYRETFAPIARLEGVRTLLAYAA 76
BLAST of mRNA_F-serratus_M_contig6810.17875.1 vs. uniprot
Match: A0A2R6NNP3_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NNP3_9APHY) HSP 1 Score: 68.9 bits (167), Expect = 7.460e-12 Identity = 33/71 (46.48%), Postives = 52/71 (73.24%), Query Frame = 1
Query: 16 VYNQVARLKDKLVIGTKMLYKQKIGQDDKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAA 228
++++V K++ V+G+K +++ K G + K+EKYK RLVAQGF QV+G+ YTE ++P +SIR LL+ AA
Sbjct: 25 LFDEVECPKNRKVVGSKWVFRIKRGPNGKIEKYKARLVAQGFTQVKGIDYTETFAPVAKFISIRTLLSLAA 95
BLAST of mRNA_F-serratus_M_contig6810.17875.1 vs. uniprot
Match: A0A060SUY4_PYCCI (Uncharacterized protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SUY4_PYCCI) HSP 1 Score: 67.8 bits (164), Expect = 1.980e-11 Identity = 33/70 (47.14%), Postives = 48/70 (68.57%), Query Frame = 1
Query: 19 YNQVARLKDKLVIGTKMLYKQKIGQDDKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAA 228
Y++V R +++ V+G K +++ K G D VE+YK RLVAQGF QVEG+ Y+E ++P SIR +L AA
Sbjct: 962 YDEVERPQNRKVVGCKWVFRLKRGADGSVERYKARLVAQGFTQVEGIDYSEMFAPVSKFASIRTVLTLAA 1031
BLAST of mRNA_F-serratus_M_contig6810.17875.1 vs. uniprot
Match: A0A0J7K7I2_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K7I2_LASNI) HSP 1 Score: 67.0 bits (162), Expect = 3.570e-11 Identity = 32/76 (42.11%), Postives = 52/76 (68.42%), Query Frame = 1
Query: 1 MVENCVYNQVARLKDKLVIGTKMLYKQKIGQDDKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAA 228
+++N + R D +VIG++M+ + K+G D+K+E+ K RLVAQGF+Q GVH++E ++P SIR++ A AA
Sbjct: 8 IIKNDTWELDERPDDSIVIGSRMVLRNKLGPDNKLERRKARLVAQGFYQQPGVHFSETFAPVARLGSIRLIAALAA 83
BLAST of mRNA_F-serratus_M_contig6810.17875.1 vs. uniprot
Match: A0A6I9TKF2_SESIN (uncharacterized protein LOC105164425 n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9TKF2_SESIN) HSP 1 Score: 65.5 bits (158), Expect = 1.270e-10 Identity = 31/62 (50.00%), Postives = 44/62 (70.97%), Query Frame = 1
Query: 46 KLVIGTKMLYKQKIGQDDKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAAS 231
K IG+K ++K K+ D +E+YK RLVA+GF Q+EGV YTE +SP AV +R+ L+ AA+
Sbjct: 652 KRAIGSKWVFKVKLRADGSIERYKARLVAKGFNQIEGVDYTESFSPVAKAVIVRLFLSLAAA 713
BLAST of mRNA_F-serratus_M_contig6810.17875.1 vs. uniprot
Match: A0A1J3CJ10_NOCCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3CJ10_NOCCA) HSP 1 Score: 64.7 bits (156), Expect = 2.330e-10 Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 1
Query: 55 IGTKMLYKQKIGQDDKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAA 228
IG K +YK K+ +D KVEKYK RLVA+G+ Q GV YTE ++P +IR++LATAA
Sbjct: 66 IGVKWVYKTKLNEDGKVEKYKARLVAKGYAQCYGVDYTEVFAPVARLDTIRVILATAA 123
BLAST of mRNA_F-serratus_M_contig6810.17875.1 vs. uniprot
Match: A0A2I4GRT0_JUGRE (uncharacterized mitochondrial protein AtMg00820-like n=1 Tax=Juglans regia TaxID=51240 RepID=A0A2I4GRT0_JUGRE) HSP 1 Score: 61.6 bits (148), Expect = 3.630e-10 Identity = 32/72 (44.44%), Postives = 46/72 (63.89%), Query Frame = 1
Query: 10 NCVYNQVARLKDKLVIGTKMLYKQKIGQDDKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATA 225
N + V+R D VIG+K +YK K+ D +E+ K RLVA+GF QV+GV ++E +SP +IRM+L A
Sbjct: 55 NQTWKLVSRTADMNVIGSKWVYKAKLKADGTLERLKARLVAKGFSQVDGVDFSETFSPVVKPATIRMVLTIA 126
BLAST of mRNA_F-serratus_M_contig6810.17875.1 vs. uniprot
Match: A0A151ST36_CAJCA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151ST36_CAJCA) HSP 1 Score: 60.1 bits (144), Expect = 3.850e-10 Identity = 31/74 (41.89%), Postives = 47/74 (63.51%), Query Frame = 1
Query: 7 ENCVYNQVARLKDKLVIGTKMLYKQKIGQDDKVEKYKCRLVAQGFWQVEGVHYTEKYSPTPSAVSIRMLLATAA 228
+N V+ V LKD+ +IGTK +YK K+ + V + K RLVA+G+ EG+ +TE ++P +IR+LLA A
Sbjct: 10 KNDVWKLVPMLKDRTIIGTKWVYKNKLDESRNVVRNKARLVAKGYSWQEGIDFTETFAPVARIEAIRILLAFVA 83 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6810.17875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig6810.17875.1 >prot_F-serratus_M_contig6810.17875.1 ID=prot_F-serratus_M_contig6810.17875.1|Name=mRNA_F-serratus_M_contig6810.17875.1|organism=Fucus serratus male|type=polypeptide|length=79bp MVENCVYNQVARLKDKLVIGTKMLYKQKIGQDDKVEKYKCRLVAQGFWQVback to top mRNA from alignment at F-serratus_M_contig6810:18757..18993- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig6810.17875.1 ID=mRNA_F-serratus_M_contig6810.17875.1|Name=mRNA_F-serratus_M_contig6810.17875.1|organism=Fucus serratus male|type=mRNA|length=237bp|location=Sequence derived from alignment at F-serratus_M_contig6810:18757..18993- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig6810:18757..18993- >mRNA_F-serratus_M_contig6810.17875.1 ID=mRNA_F-serratus_M_contig6810.17875.1|Name=mRNA_F-serratus_M_contig6810.17875.1|organism=Fucus serratus male|type=CDS|length=474bp|location=Sequence derived from alignment at F-serratus_M_contig6810:18757..18993- (Fucus serratus male)back to top |