mRNA_F-serratus_M_contig680.17859.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig680.17859.1
Unique NamemRNA_F-serratus_M_contig680.17859.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig680.17859.1 vs. uniprot
Match: A0A6H5J623_9PHAE (START domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J623_9PHAE)

HSP 1 Score: 381 bits (979), Expect = 3.680e-118
Identity = 268/602 (44.52%), Postives = 324/602 (53.82%), Query Frame = 2 
Query:   65 MRMEIVAVLATTILLFDGLLGEGTSLPVTNEPQRARLRRPLRRKHKPPPKFVLIFSDHRPSKTEDFGNHFPSTGRFCPHHKMGWRTLVEEDNDTPQ--------FWSMTISALATSGTAIA-----KPTPQASPPLSGSHRRRAEVGGYRSWGTRDLQKSRLPPQQHQPPWLHGRRXXXXXXAHEDEDHTVGWLPSPLQELRAQASSKWGAVIRWSSERCNRSLVFARLPSRRLEARKRKIDSATRGIVQLAAQIPVLTVEARRRTGNAFFTVRMFGESGIKYL--SESMRYHGL--------------GGGFDAASENMNEYGQQYGGSWLTHLTDMTVQNVVDVVARDGWEHVVTTSGVVVHRQYIALNPDGTPVPSSAVETETETAVEQVVVSAPVATEATPAIVGRGLGVTDDEA-------SRRTPRFACVKASAILSAPPEVVYLLFADNSRVREYNEHCKEVMDLEILSPDTKITWAASGRIGPFKARDFCTLVHFRKLSDGTLAQVSRPVEHPAAPRSNQFVRSEILLAGNFMRAVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCATSPVIFIRRLDAAAQKLTHELQE 1762
            M  E VA+LA T+LL +     G +     + Q+ R       +H P            P + +DFG+ +P TGRF   HK G   LV +D    +         WS T++A+  SG+ +A     KP  Q S    G  R++  +                             RXXXXXX                + +RA+ S+   A   W   R  R      +P+  +  R+         +  L AQ+  LT E  RR           G  GI+    +E +R  G               G G D          ++     L  LTD  VQNVVDVVARDGWE VV   GVVVHRQY+AL PDGTP   +A     + A        P A   + ++ GR  G  DD A         R P+FACVKASAILS PPEVVYLLFADNSRV EYNEHC+EV DLE+LS D+KITWAASGR+GPFKARDFCTLVHFR LSDGTLAQVS+PVEHPAAPR++++VRSEILLAGNFMR VPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLC +SPV FIRRL+ AA+KL  ELQ+
Sbjct:    1 MLRERVAILAATLLLLECHSMSGGATGAIPDQQQHR-------RHVP-------HYGCTPQRAQDFGSRYPQTGRFEAQHKRG---LVVDDQPAGEEWEEADLECWSATMAAIVASGSTLALQRTLKPDEQQSASAEGYGRQQRHI-----------------------------RXXXXXXXXXXXXXXXNSSAPRFRRIRAELSANLDA---W---RMRRRRARETIPAAAIVIRQH--------LTHLTAQLSELTGEGFRRAERLLSAANASGNVGIRIAGCAELLRRRGRELFLLGLRKRQNPDGSGGDKLGMGKEGEAERRKMRELQLLTDKIVQNVVDVVARDGWEVVVEREGVVVHRQYLALGPDGTPEAPAAPAAHAQAA------GVPKAEAYSASVGGRVEGSADDPAPVGEDSGKFRPPQFACVKASAILSVPPEVVYLLFADNSRVGEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSKPVEHPAAPRTSRYVRSEILLAGNFMRPVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCTSSPVTFIRRLEVAAKKLMLELQQ 536
[Close]
BLAST of mRNA_F-serratus_M_contig680.17859.1 vs. uniprot
Match: D8LLJ0_ECTSI (START domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLJ0_ECTSI)

HSP 1 Score: 379 bits (973), Expect = 7.150e-118
Identity = 275/604 (45.53%), Postives = 326/604 (53.97%), Query Frame = 2 
Query:   62 LMRMEIVAVLATTILLFDGLLGEGTSLPVTNEPQRARLRRPLRRKHKPPPKFVLIFSDHRPSKTEDFGNHFPSTGRFCPHHKMGWRTLVEEDNDTPQ--------FWSMTISALATSGTAIA-----KPTPQASPPLSGSHRRRAEVGGYRSWGTRDLQKSRLPPQQHQPPWLHGRRXXXXXXAHEDEDHTVGWLPSPLQELRAQASSKWGAVIRWSSERCNRSLVFARLPSRRLEARKRKIDSATRGIVQLAAQIPVLTVEARRRTGNAFFTVRMFGESGIKYL--SESMRYHG-----LG----------GGFDAASENMNEYGQQYGGSWLTHLTDMTVQNVVDVVARDGWEHVVTTSGVVVHRQYIALNPDGTPVPSSAVETETETAVEQVVVSAPVATEATPAIVGRGLG-------VTDDEASRRTPRFACVKASAILSAPPEVVYLLFADNSRVREYNEHCKEVMDLEILSPDTKITWAASGRIGPFKARDFCTLVHFRKLSDGTLAQVSRPVEHPAAPRSNQFVRSEILLAGNFMRAVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCATSPVIFIRRLDAAAQKLTHELQE 1762
            LM  E VA+LA T+LL       G +     + Q+ R       +H P            P + +DFG+ +P TGRF   HK G   LV +D    +         W  TI+A+  SG+ +A     KP  Q S          A   GY           R P         H RRXXXXXX            P   + +RA+ S+   A   W   R  R       P+  +  R+         + QL AQ+  LT E  RR        +  G  GI+    +E +R  G     LG          GG     +      ++     L  LTD  VQNVVDVVARDGWE VV   GVVVHRQY+AL PDGTP      E              P A  ++  + GR  G       V DD    + P+FACVKASAILS PPEVVYLLFADNSRV EYNEHC+EV DLE+LS D+KITWAASGR+GPFKARDFCTLVHFR LSDGTLAQVS+PVEHPAAPR++++VRSEILLAGNFMR VPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLC +SPV FIRRL+ AA+KL  ELQ+
Sbjct:   33 LMLRERVAILAATLLLLKCHSMSGGATGALPDQQQHR-------RHVP-------HYGCTPPRAQDFGSRYPQTGRFEAWHKRG---LVLDDEPAGEEWEGADRECWGATIAAIVASGSTLALQRTLKPDEQQS----------ASAEGY----------GRQP--------RHYRRXXXXXXXXXXXXXXXXSAPR-FRRMRAELSANLDA---W---RMRRRRARETTPAAAIVIRQH--------LTQLTAQLSELTGEGFRRAERLLSAAKASGNVGIRIAGCAELLRRRGRELFLLGLRKKQNPDGLGGEGKLGKGKEGEAERRKMRELQLLTDKIVQNVVDVVARDGWEVVVEREGVVVHRQYLALGPDGTP------EAXXXXXXXXQAAGVPKAEASSAFVGGRVEGSADDSVPVGDDSGKSKPPQFACVKASAILSVPPEVVYLLFADNSRVGEYNEHCREVKDLEVLSQDSKITWAASGRMGPFKARDFCTLVHFRTLSDGTLAQVSKPVEHPAAPRTSRYVRSEILLAGNFMRPVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCTSSPVTFIRRLEVAAKKLMLELQQ 570
[Close]
BLAST of mRNA_F-serratus_M_contig680.17859.1 vs. uniprot
Match: D8LAW9_ECTSI (START domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAW9_ECTSI)

HSP 1 Score: 204 bits (519), Expect = 1.060e-53
Identity = 111/269 (41.26%), Postives = 152/269 (56.51%), Query Frame = 2 
Query:  986 DMTVQNVVDVVARDGWEHVVTTSGVVVHRQYIALNPDGTPVPSSAVETETETAVEQVVVSAPVATEATPAIVGRGLGVTDDEASRRTPRFACVKASAILSAPPEVVYLLFADNSRVREYNEHCKEVMDLEILSPDTKITWAASGRIGPFKARDFCTLVHFRKLSDGTLAQVSRPVEHPAAPRSNQFVRSEILLAGNFMRAVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCATSPVIFIRRLDAAAQKLTHELQESTGAESNRIV 1792
            D +V+ V+ V+  DGWE V   SGVVV R+++                                            G+ D+ A+ +   FACVKA   L A    +Y LF DN RV EYN++CKEV DLE LS DTK++WA + R  PFKARDF T VH+R L DGT+  ++RPVEHPAA R  ++VR+EIL+A N MR    DPS+T+F+ VTH+NPGG A++R GA +VN LCA +PV  +  L+ +A       +E+  A+  ++ 
Sbjct:  252 DASVEAVLAVIESDGWERVTEKSGVVVVRKFVXXXXXXXXXXXXXXR-----------------------------GIVDEGAAAK---FACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVLNRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSANSAPVPKEEAAAAKKQKVA 488
[Close]
BLAST of mRNA_F-serratus_M_contig680.17859.1 vs. uniprot
Match: I2CRQ3_NANGC (Lipid transfer protein 5-like protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRQ3_NANGC)

HSP 1 Score: 192 bits (487), Expect = 2.980e-53
Identity = 85/144 (59.03%), Postives = 116/144 (80.56%), Query Frame = 2 
Query: 1250 RFACVKASAILSAPPEVVYLLFADNSRVREYNEHCKEVMDLEILSPDTKITWAASGRIGPFKARDFCTLVHFRKLSDGTLAQVSRPVEHPAAPRSNQFVRSEILLAGNFMRAVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVN 1681
            RFACVKA  ++ AP + V+ LF D++RV EYNEHC+E+ D++ LS +TK+TW+ASGR GPFKARDFCT+VH+R+L DG L  V+R  EH  APRS+++VRSEILLAGN MR  P DP++T  + +TH+NPGG+ +++AGA++VN
Sbjct:   16 RFACVKAVGVVDAPVDRVFDLFLDSARVGEYNEHCREIQDIDTLSANTKVTWSASGRYGPFKARDFCTVVHYRRLEDGRLVVVNRAAEHVRAPRSDKYVRSEILLAGNIMRPHPSDPNKTLLVTLTHINPGGSIDSKAGALMVN 159
[Close]
BLAST of mRNA_F-serratus_M_contig680.17859.1 vs. uniprot
Match: A0A6U4ZLH7_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4ZLH7_HEMAN)

HSP 1 Score: 194 bits (493), Expect = 7.220e-53
Identity = 90/164 (54.88%), Postives = 118/164 (71.95%), Query Frame = 2 
Query: 1250 RFACVKASAILSAPPEVVYLLFADNSRVREYNEHCKEVMDLEILSPDTKITWAASGRIGPFKARDFCTLVHFRKLSDGTLAQVSRPVEHPAAPRSNQFVRSEILLAGNFMRAVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCATSPVIFIRRLDAAAQK 1741
            +F CVKA A+L A P  VY LF DN+RVREYNE CK++ DLE  +  TK+TW+AS RIGPFK RDF T VH+R L D TL  V+R  +HPAAP++++++R EI+L GN M+ VP DP +T F M+THVNPGG A TR G M++NS  A  P+ F++ L  A ++
Sbjct:   37 KFLCVKAEAVLDASPAQVYTLFVDNTRVREYNEFCKQIRDLEYKNSTTKVTWSASARIGPFKERDFVTRVHYRTLPDQTLLVVNRAEDHPAAPQTDRYLRMEIVLGGNVMKPVPSDPEKTMFTMLTHVNPGGVAGTRMGTMIMNSAAANGPISFVQGLRDALKR 200
[Close]
BLAST of mRNA_F-serratus_M_contig680.17859.1 vs. uniprot
Match: A0A7S2RES9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RES9_9STRA)

HSP 1 Score: 197 bits (500), Expect = 7.950e-53
Identity = 92/163 (56.44%), Postives = 118/163 (72.39%), Query Frame = 2 
Query: 1250 RFACVKASAILSAPPEVVYLLFADNSRVREYNEHCKEVMDLEILSPDTKITWAASGRIGPFKARDFCTLVHFRKLSDGTLAQVSRPVEHPAAPRSNQFVRSEILLAGNFMRAVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCATSPVIFIRRLDAAAQ 1738
            +F+CVKA+AIL+A P  VY LF DNS+V EYNEHC+++ D+E +S DTK+ W+ +   GPFK RDF T+VH+R+  DGTL  ++RP  HP  P   QF R+E+LLAGN MR V GD S+TEF M+THVNPGG      GA +VN +C+  PV FIRRL+ AAQ
Sbjct:  135 KFSCVKATAILNASPHDVYKLFLDNSQVHEYNEHCQKLEDVERVSKDTKVAWSVTAPFGPFKPRDFVTMVHYRREPDGTLMVLNRPCNHPDRPPVPQFQRAELLLAGNVMRPVQGDKSKTEFTMITHVNPGGVVNNALGAAIVNRICSQGPVDFIRRLERAAQ 297
[Close]
BLAST of mRNA_F-serratus_M_contig680.17859.1 vs. uniprot
Match: A0A7S2V5A8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5A8_9STRA)

HSP 1 Score: 194 bits (494), Expect = 3.580e-51
Identity = 89/164 (54.27%), Postives = 120/164 (73.17%), Query Frame = 2 
Query: 1250 RFACVKASAILSAPPEVVYLLFADNSRVREYNEHCKEVMDLEILSPDTKITWAASGRIGPFKARDFCTLVHFRKLSDGTLAQVSRPVEHPAAPRSNQFVRSEILLAGNFMRAVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCATSPVIFIRRLDAAAQK 1741
            +FA +KA   + AP E V+ LF DNSRV EYN+HC E+ DLE + P TK+TW+ASG+ GPFKARDFCTLVHF  L+DGT A VS P  HP AP ++++VRSE+++AG+FMR  P DP++T F  +T VNPGG A +   A +VNSL    P+ F+++++ AAQ+
Sbjct:  219 KFAVIKAVGTIDAPIEEVHKLFVDNSRVGEYNDHCHEIKDLEWVGPRTKVTWSASGKYGPFKARDFCTLVHFATLADGTQAIVSVPFNHPQAPATSRYVRSEVIMAGHFMRRDPKDPNKTAFTTITQVNPGGIAGSAGAAKIVNSLSTQGPITFVKKVELAAQQ 382
[Close]
BLAST of mRNA_F-serratus_M_contig680.17859.1 vs. uniprot
Match: A0A6H5JSI0_9PHAE (START domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI0_9PHAE)

HSP 1 Score: 193 bits (491), Expect = 1.650e-50
Identity = 94/181 (51.93%), Postives = 122/181 (67.40%), Query Frame = 2 
Query: 1250 RFACVKASAILSAPPEVVYLLFADNSRVREYNEHCKEVMDLEILSPDTKITWAASGRIGPFKARDFCTLVHFRKLSDGTLAQVSRPVEHPAAPRSNQFVRSEILLAGNFMRAVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCATSPVIFIRRLDAAAQKLTHELQESTGAESNRIV 1792
            +FACVKA   L A    +Y LF DN RV EYN++CKEV DLE LS DTK++WA + R  PFKARDF T VH+R L DGT+  V+RPVEHPAA R  ++VR+EIL+A N MR    DPS+T+F+ VTH+NPGG A++R GA +VN LCA +PV  +  L+ +A       +E   A+   + 
Sbjct:  243 KFACVKAMGTLDARASDLYKLFLDNERVHEYNDNCKEVRDLERLSDDTKVSWACTPRYRPFKARDFVTAVHYRTLEDGTMMVVNRPVEHPAARRGKKYVRAEILIATNIMRPNREDPSKTDFISVTHINPGGIADSRIGAKIVNKLCAKAPVNLLVALERSANSAPVPREEVAAAKKKNVA 423
[Close]
BLAST of mRNA_F-serratus_M_contig680.17859.1 vs. uniprot
Match: A0A7S0VPD5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VPD5_9CRYP)

HSP 1 Score: 180 bits (456), Expect = 8.590e-49
Identity = 82/138 (59.42%), Postives = 105/138 (76.09%), Query Frame = 2 
Query: 1310 LFADNSRVREYNEHCKEVMDLEILSPDTKITWAASGRIGPFKARDFCTLVHFRKLSDGTLAQVSRPVEHPAAPRSNQFVRSEILLAGNFMRAVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCATSPVIFIRRL 1723
            LF DN+RVREYNE CK++ DLE  +  TK+TW+AS RIGPFK RDF T VH+R L+D TL  V+R  +HPAAPR+++++R EI+L GN MRAVPGDP +T F M+THVNPGG A TR G M++NS  A  P+ F++ L
Sbjct:    2 LFVDNTRVREYNEFCKQIRDLEYKNSTTKVTWSASARIGPFKERDFVTRVHYRTLADQTLLVVNRAEDHPAAPRTDRYLRMEIVLGGNVMRAVPGDPQKTSFTMLTHVNPGGVAGTRMGTMIMNSAAANGPISFVQGL 139
[Close]
BLAST of mRNA_F-serratus_M_contig680.17859.1 vs. uniprot
Match: A0A7S4NFJ2_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NFJ2_GUITH)

HSP 1 Score: 183 bits (464), Expect = 1.670e-48
Identity = 94/181 (51.93%), Postives = 118/181 (65.19%), Query Frame = 2 
Query: 1196 IVGRGLGVTDDEASRRTPRFACVKASAILSAPPEVVYLLFADNSRVREYNEHCKEVMDLEILSPDTKITWAASGRIGPFKARDFCTLVHFRKLSDGTLAQVSRPVEHPAAPRSNQFVRSEILLAGNFMRAVPG-----DPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCATSPVIFIRRL 1723
            I GR LG +         +F CV +S IL APPE VY  F DNSRV EYNE CK+V DLE L  +TKITW+ASGR+GPFK RDF T VH+R  SDG+L   +R  +HP AP + +F+R EI++ GN +R         D SRT   ++THVNPGG AETR G M++NS  A+ P+ FI+ L
Sbjct:   48 IAGRPLGPS--------AKFFCVMSSGILDAPPEQVYTYFVDNSRVHEYNEFCKQVKDLEYLDANTKITWSASGRVGPFKERDFVTRVHYRTASDGSLIIANRAEKHPKAPETERFLRMEIMIGGNVLRPAREADGSLDHSRTNITVLTHVNPGGIAETRLGTMILNSAAASGPIKFIQGL 220
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig680.17859.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J623_9PHAE3.680e-11844.52START domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LLJ0_ECTSI7.150e-11845.53START domain-containing protein (Fragment) n=1 Tax... [more]
D8LAW9_ECTSI1.060e-5341.26START domain-containing protein n=1 Tax=Ectocarpus... [more]
I2CRQ3_NANGC2.980e-5359.03Lipid transfer protein 5-like protein (Fragment) n... [more]
A0A6U4ZLH7_HEMAN7.220e-5354.88Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A7S2RES9_9STRA7.950e-5356.44Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2V5A8_9STRA3.580e-5154.27Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6H5JSI0_9PHAE1.650e-5051.93START domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A7S0VPD5_9CRYP8.590e-4959.42Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S4NFJ2_GUITH1.670e-4851.93Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig680contigF-serratus_M_contig680:247692..253058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.8
Seed ortholog evalue1.3e-28
Seed eggNOG ortholog2880.D7G2E9
KEGG koko:K10779
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.lipid binding
EggNOG OGsKOG2761@1,KOG2761@2759
Ec32 ortholog descriptionSTART domain
Ec32 orthologEc-22_001140.1
EC3.6.4.12
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03000,ko03036
Exons2
Model size2575
Cds size1734
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig680.17859.1prot_F-serratus_M_contig680.17859.1Fucus serratus malepolypeptideF-serratus_M_contig680 247756..252281 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932084.4065487-UTR-F-serratus_M_contig680:247691..2477551622932084.4065487-UTR-F-serratus_M_contig680:247691..247755Fucus serratus maleUTRF-serratus_M_contig680 247692..247755 +
1690964139.324848-UTR-F-serratus_M_contig680:247691..2477551690964139.324848-UTR-F-serratus_M_contig680:247691..247755Fucus serratus maleUTRF-serratus_M_contig680 247692..247755 +
1622932084.449385-UTR-F-serratus_M_contig680:252281..2530581622932084.449385-UTR-F-serratus_M_contig680:252281..253058Fucus serratus maleUTRF-serratus_M_contig680 252282..253058 +
1690964139.35897-UTR-F-serratus_M_contig680:252281..2530581690964139.35897-UTR-F-serratus_M_contig680:252281..253058Fucus serratus maleUTRF-serratus_M_contig680 252282..253058 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932084.4186778-CDS-F-serratus_M_contig680:247755..2491261622932084.4186778-CDS-F-serratus_M_contig680:247755..249126Fucus serratus maleCDSF-serratus_M_contig680 247756..249126 +
1690964139.340422-CDS-F-serratus_M_contig680:247755..2491261690964139.340422-CDS-F-serratus_M_contig680:247755..249126Fucus serratus maleCDSF-serratus_M_contig680 247756..249126 +
1622932084.4327898-CDS-F-serratus_M_contig680:251918..2522811622932084.4327898-CDS-F-serratus_M_contig680:251918..252281Fucus serratus maleCDSF-serratus_M_contig680 251919..252281 +
1690964139.3496864-CDS-F-serratus_M_contig680:251918..2522811690964139.3496864-CDS-F-serratus_M_contig680:251918..252281Fucus serratus maleCDSF-serratus_M_contig680 251919..252281 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig680.17859.1

>prot_F-serratus_M_contig680.17859.1 ID=prot_F-serratus_M_contig680.17859.1|Name=mRNA_F-serratus_M_contig680.17859.1|organism=Fucus serratus male|type=polypeptide|length=578bp
MRMEIVAVLATTILLFDGLLGEGTSLPVTNEPQRARLRRPLRRKHKPPPK
FVLIFSDHRPSKTEDFGNHFPSTGRFCPHHKMGWRTLVEEDNDTPQFWSM
TISALATSGTAIAKPTPQASPPLSGSHRRRAEVGGYRSWGTRDLQKSRLP
PQQHQPPWLHGRRRRRRRRAHEDEDHTVGWLPSPLQELRAQASSKWGAVI
RWSSERCNRSLVFARLPSRRLEARKRKIDSATRGIVQLAAQIPVLTVEAR
RRTGNAFFTVRMFGESGIKYLSESMRYHGLGGGFDAASENMNEYGQQYGG
SWLTHLTDMTVQNVVDVVARDGWEHVVTTSGVVVHRQYIALNPDGTPVPS
SAVETETETAVEQVVVSAPVATEATPAIVGRGLGVTDDEASRRTPRFACV
KASAILSAPPEVVYLLFADNSRVREYNEHCKEVMDLEILSPDTKITWAAS
GRIGPFKARDFCTLVHFRKLSDGTLAQVSRPVEHPAAPRSNQFVRSEILL
AGNFMRAVPGDPSRTEFLMVTHVNPGGAAETRAGAMLVNSLCATSPVIFI
RRLDAAAQKLTHELQESTGAESNRIVD*
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mRNA from alignment at F-serratus_M_contig680:247692..253058+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig680.17859.1 ID=mRNA_F-serratus_M_contig680.17859.1|Name=mRNA_F-serratus_M_contig680.17859.1|organism=Fucus serratus male|type=mRNA|length=5367bp|location=Sequence derived from alignment at F-serratus_M_contig680:247692..253058+ (Fucus serratus male)
GCGTGGGTGATCGGAGACAACTCCGCCCCTATATCCTCTCGAATGTGATA
GAAGTGTATTTCTCATGCGTATGGAAATCGTGGCCGTCCTCGCCACTACG
ATCCTTTTGTTCGATGGACTCCTTGGCGAAGGAACATCGTTGCCTGTGAC
AAACGAACCCCAACGGGCAAGACTCAGGCGCCCCCTGAGGCGAAAACACA
AACCTCCCCCGAAGTTCGTCCTTATCTTCAGCGACCACCGACCCTCGAAG
ACGGAGGACTTTGGTAACCACTTCCCGTCCACTGGGAGGTTCTGTCCTCA
CCATAAGATGGGGTGGCGTACGTTGGTCGAGGAGGATAACGATACACCCC
AATTCTGGAGCATGACCATCTCCGCCCTAGCAACGTCAGGCACTGCAATT
GCCAAGCCGACACCACAAGCATCTCCTCCTTTATCTGGTTCCCATCGAAG
GAGGGCAGAAGTAGGCGGCTATCGATCTTGGGGAACCAGGGATCTTCAAA
AGAGTCGATTACCCCCGCAGCAACACCAGCCGCCATGGCTGCATGGGCGA
CGCAGACGTCGGCGCCGAAGAGCACATGAGGACGAAGACCATACTGTAGG
ATGGCTACCGTCTCCTCTACAAGAACTGAGGGCGCAAGCATCATCAAAAT
GGGGCGCCGTCATCAGGTGGTCCAGCGAACGGTGTAATCGATCTCTCGTC
TTCGCTCGTCTTCCGTCGCGACGACTCGAGGCACGGAAGCGAAAGATCGA
TTCGGCCACACGGGGAATCGTTCAGTTGGCCGCTCAAATACCGGTTCTGA
CGGTCGAAGCCAGGCGGCGCACGGGAAACGCCTTCTTCACCGTGCGCATG
TTTGGCGAGTCTGGCATCAAATACCTTTCCGAGAGCATGAGGTACCATGG
GCTGGGGGGAGGATTTGACGCCGCTAGCGAAAATATGAACGAATACGGAC
AGCAATACGGGGGCTCGTGGTTGACCCACCTGACGGACATGACTGTCCAG
AACGTCGTGGACGTTGTCGCGAGGGATGGTTGGGAGCACGTGGTCACGAC
GAGCGGAGTGGTCGTGCATCGGCAATACATCGCGCTGAACCCCGATGGGA
CGCCAGTTCCATCCTCGGCCGTAGAAACGGAAACGGAGACGGCAGTGGAG
CAGGTGGTGGTCTCGGCGCCTGTAGCGACCGAGGCAACGCCGGCAATAGT
TGGAAGGGGCTTGGGGGTCACCGATGACGAGGCATCGCGGAGAACGCCGC
GGTTTGCATGCGTGAAGGCTTCCGCGATCCTGTCTGCGCCACCGGAAGTT
GTCTACTTGCTGTTTGCGGACAACTCTCGCGTCAGGGAGTACAATGAACA
CTGCAAGGAGGTGATGGACTTGGAGATTTTATCCCCGGATACAAAGATAA
CGTGGGCAGCGAGCGGGCGGATAGGTCCTTTCAAGGTACGCGAGCCAAGG
GAGTACGTCGGAAATGTGGATTTCGCATCGACGATGATTTAACGCTGCCC
TATACACGATTGATCCCCGTTCCCCGTATTTTGCTCTTCATACTCCAAAA
TATTCTCGGTTTTCATTTTTTTTTAAATGCGGTTGAATGCTTGCTTCAAT
AAAATGGCGCCATTTAGGTCATTTGCAGCTCTTCTCAAGGGTTGTAGCAG
TTAGACAGAAGTGGAGGTCAGCCACAAGAGAAGGCTAACCCGCAAGGAAT
GGAAGTGTTCGCCGTAGAAAGACGTAGTCTTCCTGAAGATTTCGCGTCTT
TTCCTGCTCTGTGTGGAGTGCAATCGTCGCCACTCGTATTTTCTCCGAAT
CTGCCGATCGTTTGGGGTCCGCTGCAGTGGTAGGCACCGGGGGAGACACT
GTGCTTGAGGTTCGCGTTCTCCCGAGCTGAGTGATCGTGTTAGGTGACCG
CTCTCTTGTAAATTGTACACACCAGCTCACACGGACGCTTCTGTTTCTCA
CACGGGCCGAAACGGTTGAGAGTACGTCGAGGACGGTCGAGGACGGCGGC
CGAGAGCCTACGTGGTCAGGTCTGAACCAAAGCCTGTCTCAGCCGACCAA
ATGCATTCCACTCACGGTACACAAAGCCCCCGCGCTCACGAAACAGCAAG
CAGCATCGTAGTATGTGGGAGTTAGGTAGACATGGCCGCTAGAGTTACCA
CACGAAACCGAGCTACGATGAAATAATCGTCTCTTTTGTTGAAGTTGAAA
GCCTGTGCAACCCAAGTGGTTACCCTCGTCGAACGCCTTGAGTGGAAAAC
ACCGTGCTTGATGCGCACACTCGCGAACCGATTACGGTTGTCACATAAAG
ATACCTGAGCGTTTTACACTTCTGTAGATGGTGTCAGCTCAGGCACAAGT
CAACGAGTGCGTGCCTCAGCAGAAATCTGCGTGGAGAGAGCACACTCGAT
ATTCTGTACAAATCATTACAAAATCGACATAACTACTGTACTGTATAAAA
GTTTGATGGGGCAGTCCCATCTGTACAAGAAAAAATAATTATATCTGCAG
CACTGCCATCATTCTCCATCAGTTCGACTAATGAGTGCCTGCGCATAAAA
TAAAAGTGCCAAGGAAAGATCTAGAAATACAAAGAATCCCGCCCTTAGGC
CAACCTTTGTGGGAAACAGAAACGACAGTGAAACACAGAAAAGTTAAATT
TCTGTGGCGAAATTTTTGTAAACGTCGCACTATGGGCCCCGTGCCACATA
AATTTCGCCCTACAGAAATTGCGAATTTCTGTGGGAGGCTATTTTTCTCT
GCCCACCTACAGAAATGAGGAAATGAGACTCATTTCTGTAGGTGGCTCGA
CAAGTTTATTTCGCCACAGAAATGATTCACGCCTTCCAAGAACGATTGGG
AGGTCGGGACTGTAGCATCCCTCCTATCAAATATCGGCAAAGAAGAGCTC
GCGAGTGCTGTTGTACGATGGGTGCCGAGCAGCAGTAGTTGTGCGATGAT
CGCCGGAGCAGCAGATTTGGAGGAAATTTATAGAATCGGTTGAGGTGATG
GGCCCGGGCAAGCAGATTTGGAGGAAAATTATAAAAGCTGTTGAGGTGAT
GGGCCCGGACAAGCTGATCGCCGGCGGCGGGGGCGGTTGAATGGGTGGCG
CCGGAGATCAATCAAGCAGGGACGGACTGCGTGTACGAGCGTCCGACGGC
TCGCCATCGAAACGATGTCGCTCTGCCCACTCTATTTGCGATGTACTCGT
AATTTAAGTACTAAACGACCCTGTCTCGCCGGACCAAATTCTCGGGCACA
AACGCGGAGAGGGAAATATTAATTTTCCCTGTTCAGTTGACTACGAGCAG
GGCTGGCAACCTTACCCGGTTGATCCATACTCGCTATGTGTGCATACTTG
CACCTGTCTTTGTGCGGTGATGGGTGGCCGAAAGTTCCGGGGTTAACCCG
ATATGCTCCCCGTTCTTTTTTGTATTTTTCCATTATCCCATAAACGACCA
ACTACAGTTTTTCCCCACGTTTTTTTTGGCCACAGAATTTACAAATTTCT
GTAGTTTGCTTTTCTGTATTTTCGTTTCCCATAAAGGTTGGCCTTAGTAA
AAAATTTCATGTTTTTTGCGAACCGGAACACCCTCAGAGACATTCAAATA
CAGATAAAAATCCATACTGTGTATAGTGCAGCCTTAAAGTTCCTTACGAA
CTTTGGTGTCGACCAGTGTTGAAAGCCTATTCGTGGTGATACTAGAATGA
TGTCATATTGTTATTAATACTATGTCCTGATAGTTGAGCACAAATGTTAT
TGACCGATTGACCTTGTCCTTGCTGCTCCATGCGATAGAATATGTATGTA
TGTGTAGGGTCATCAGATAAAGCAGAGTGTATGGATCAACCGGGTAAGGT
TGCCAATCCTGCTCGTGGTCAGCTGAACAAGGAAAATAAATATTCCCCCG
TCCCCGTACGTGCCTGAGAGTTTGGTCTCGCGAGACGGGTTCATGTGTGT
ATAGTAAGCCCAGTTTTTCACGATTGAATTGGCTGATGCTCGCCGCGTTT
CATTCTTGGGATAAGGGTTCTGCCGTGCCTTGAGCGGTTGAGACTCACCG
CTGTTCTGTTGCACCCTTCGCGCTTCGACACCATCATCGGCTGGGAATGC
GAACCAGCAGGCAATGGAATAAAAACCAACGAAGAATACGTCTGACACGA
TGAACAAAGCGCGACGATTGTTTCGTTCCATTCACCCTCTCTCGCTTCCT
TCCGCGTCCTCTCACCGCCGCCTTCAGGCGCGAGACTTCTGTACGCTCGT
GCACTTTAGGAAACTAAGTGACGGTACGCTGGCGCAAGTATCGCGGCCGG
TGGAGCATCCTGCGGCGCCACGATCGAACCAGTTTGTCCGCAGCGAGATC
TTGCTCGCCGGCAACTTCATGCGCGCAGTCCCCGGAGACCCATCACGAAC
AGAATTTCTGATGGTGACGCACGTCAATCCGGGAGGCGCGGCGGAGACGC
GCGCCGGTGCCATGCTTGTGAACTCCCTCTGCGCGACCTCGCCGGTAATT
TTTATCCGAAGACTAGATGCAGCCGCTCAGAAACTTACGCACGAACTCCA
GGAGTCCACGGGTGCGGAGTCGAATCGTATTGTGGATTGAAGGGCGCCGT
CTTCCATGCCGTCGCTCCAGTCGAGGGCAGCGACACCCGGAGGGATTTCG
GAGGTTGGAGACGAATCCGGGGCGGCACAGCGGCAGATTTTGGAGCGGTC
CCGTACTCGTACCGGGACGGAGGAAGATGCGAGGAGAAACGATGAGAGCC
ACGGAGGTGGTCGCGATGATCGATCTGGCCCACGGAGTTGACAGCAGTGA
CACCGTCGGCGCTAGCCTTCTGTCGCCTCGATAGCGTCGACTTCTGGCGA
TCCCCTTCGTTGACGGGATGCTGGCTCACGCCCTCTCGTTTCGCGCGTTG
AACCGCTCGCTTGTCTGTGGTGTAGCATGTTAAAATAACTTTGTTCATTC
TCCTCGGACTCCTCGGAGTAGTTTTGCAGCGCTGCGTCCAACTTTTGGTG
AACGTTGGCTCGGTGAGCGTTAATATATCTTTGGTGTATTCAGTTTTTAA
GACCGTAGGTGGCTTGTACATCGTTTATGCCGCGGCGTAGGCAGTCCGAG
GTTGTTTCTCGGAACCCAAGGGTGTGCTGTGTGGCGGACGATATCTACTC
GCGACAGAGATTGATATGACGATCCATGCCGCACCTGCTCACAACACACA
CGCAAACCAGTTTCGTTACAAGTAGTCAAGACCCGGCTGACCGTTTCGAC
GCGGTCTATTCTCATGAATAAATTATCCGGCGTTCATGTAGAACTAAGAC
GAACTTGGAGGTGTTTCGTGATTTCATTCCTACTGCATGTTATTTTCCTT
ACAATTTTGTCAATCTA
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Coding sequence (CDS) from alignment at F-serratus_M_contig680:247692..253058+

>mRNA_F-serratus_M_contig680.17859.1 ID=mRNA_F-serratus_M_contig680.17859.1|Name=mRNA_F-serratus_M_contig680.17859.1|organism=Fucus serratus male|type=CDS|length=3468bp|location=Sequence derived from alignment at F-serratus_M_contig680:247692..253058+ (Fucus serratus male)
ATGCGTATGGAAATCGTGGCCGTCCTCGCCACTACGATCCTTTTGTTCGA
TGGACTCCTTGGCGAAGGAACATCGTTGCCTGTGACAAACGAACCCCAAC
GGGCAAGACTCAGGCGCCCCCTGAGGCGAAAACACAAACCTCCCCCGAAG
TTCGTCCTTATCTTCAGCGACCACCGACCCTCGAAGACGGAGGACTTTGG
TAACCACTTCCCGTCCACTGGGAGGTTCTGTCCTCACCATAAGATGGGGT
GGCGTACGTTGGTCGAGGAGGATAACGATACACCCCAATTCTGGAGCATG
ACCATCTCCGCCCTAGCAACGTCAGGCACTGCAATTGCCAAGCCGACACC
ACAAGCATCTCCTCCTTTATCTGGTTCCCATCGAAGGAGGGCAGAAGTAG
GCGGCTATCGATCTTGGGGAACCAGGGATCTTCAAAAGAGTCGATTACCC
CCGCAGCAACACCAGCCGCCATGGCTGCATGGGCGACGCAGACGTCGGCG
CCGAAGAGCACATGAGGACGAAGACCATACTGTAGGATGGCTACCGTCTC
CTCTACAAGAACTGAGGGCGCAAGCATCATCAAAATGGGGCGCCGTCATC
AGGTGGTCCAGCGAACGGTGTAATCGATCTCTCGTCTTCGCTCGTCTTCC
GTCGCGACGACTCGAGGCACGGAAGCGAAAGATCGATTCGGCCACACGGG
GAATCGTTCAGTTGGCCGCTCAAATACCGGTTCTGACGGTCGAAGCCAGG
CGGCGCACGGGAAACGCCTTCTTCACCGTGCGCATGTTTGGCGAGTCTGG
CATCAAATACCTTTCCGAGAGCATGAGGTACCATGGGCTGGGGGGAGGAT
TTGACGCCGCTAGCGAAAATATGAACGAATACGGACAGCAATACGGGGGC
TCGTGGTTGACCCACCTGACGGACATGACTGTCCAGAACGTCGTGGACGT
TGTCGCGAGGGATGGTTGGGAGCACGTGGTCACGACGAGCGGAGTGGTCG
TGCATCGGCAATACATCGCGCTGAACCCCGATGGGACGCCAGTTCCATCC
TCGGCCGTAGAAACGGAAACGGAGACGGCAGTGGAGCAGGTGGTGGTCTC
GGCGCCTGTAGCGACCGAGGCAACGCCGGCAATAGTTGGAAGGGGCTTGG
GGGTCACCGATGACGAGGCATCGCGGAGAACGCCGCGGTTTGCATGCGTG
AAGGCTTCCGCGATCCTGTCTGCGCCACCGGAAGTTGTCTACTTGCTGTT
TGCGGACAACTCTCGCGTCAGGGAGTACAATGAACACTGCAAGGAGGTGA
TGGACTTGGAGATTTTATCCCCGGATACAAAGATAACGTGGGCAGCGAGC
GGGCGGATAGGTCCTTTCAAGATGCGTATGGAAATCGTGGCCGTCCTCGC
CACTACGATCCTTTTGTTCGATGGACTCCTTGGCGAAGGAACATCGTTGC
CTGTGACAAACGAACCCCAACGGGCAAGACTCAGGCGCCCCCTGAGGCGA
AAACACAAACCTCCCCCGAAGTTCGTCCTTATCTTCAGCGACCACCGACC
CTCGAAGACGGAGGACTTTGGTAACCACTTCCCGTCCACTGGGAGGTTCT
GTCCTCACCATAAGATGGGGTGGCGTACGTTGGTCGAGGAGGATAACGAT
ACACCCCAATTCTGGAGCATGACCATCTCCGCCCTAGCAACGTCAGGCAC
TGCAATTGCCAAGCCGACACCACAAGCATCTCCTCCTTTATCTGGTTCCC
ATCGAAGGAGGGCAGAAGTAGGCGGCTATCGATCTTGGGGAACCAGGGAT
CTTCAAAAGAGTCGATTACCCCCGCAGCAACACCAGCCGCCATGGCTGCA
TGGGCGACGCAGACGTCGGCGCCGAAGAGCACATGAGGACGAAGACCATA
CTGTAGGATGGCTACCGTCTCCTCTACAAGAACTGAGGGCGCAAGCATCA
TCAAAATGGGGCGCCGTCATCAGGTGGTCCAGCGAACGGTGTAATCGATC
TCTCGTCTTCGCTCGTCTTCCGTCGCGACGACTCGAGGCACGGAAGCGAA
AGATCGATTCGGCCACACGGGGAATCGTTCAGTTGGCCGCTCAAATACCG
GTTCTGACGGTCGAAGCCAGGCGGCGCACGGGAAACGCCTTCTTCACCGT
GCGCATGTTTGGCGAGTCTGGCATCAAATACCTTTCCGAGAGCATGAGGT
ACCATGGGCTGGGGGGAGGATTTGACGCCGCTAGCGAAAATATGAACGAA
TACGGACAGCAATACGGGGGCTCGTGGTTGACCCACCTGACGGACATGAC
TGTCCAGAACGTCGTGGACGTTGTCGCGAGGGATGGTTGGGAGCACGTGG
TCACGACGAGCGGAGTGGTCGTGCATCGGCAATACATCGCGCTGAACCCC
GATGGGACGCCAGTTCCATCCTCGGCCGTAGAAACGGAAACGGAGACGGC
AGTGGAGCAGGTGGTGGTCTCGGCGCCTGTAGCGACCGAGGCAACGCCGG
CAATAGTTGGAAGGGGCTTGGGGGTCACCGATGACGAGGCATCGCGGAGA
ACGCCGCGGTTTGCATGCGTGAAGGCTTCCGCGATCCTGTCTGCGCCACC
GGAAGTTGTCTACTTGCTGTTTGCGGACAACTCTCGCGTCAGGGAGTACA
ATGAACACTGCAAGGAGGTGATGGACTTGGAGATTTTATCCCCGGATACA
AAGATAACGTGGGCAGCGAGCGGGCGGATAGGTCCTTTCAAGGCGCGAGA
CTTCTGTACGCTCGTGCACTTTAGGAAACTAAGTGACGGTACGCTGGCGC
AAGTATCGCGGCCGGTGGAGCATCCTGCGGCGCCACGATCGAACCAGTTT
GTCCGCAGCGAGATCTTGCTCGCCGGCAACTTCATGCGCGCAGTCCCCGG
AGACCCATCACGAACAGAATTTCTGATGGTGACGCACGTCAATCCGGGAG
GCGCGGCGGAGACGCGCGCCGGTGCCATGCTTGTGAACTCCCTCTGCGCG
ACCTCGCCGGTAATTTTTATCCGAAGACTAGATGCAGCCGCTCAGAAACT
TACGCACGAACTCCAGGAGTCCACGGGTGCGGAGTCGAATCGTATTGTGG
ATTGAGCGCGAGACTTCTGTACGCTCGTGCACTTTAGGAAACTAAGTGAC
GGTACGCTGGCGCAAGTATCGCGGCCGGTGGAGCATCCTGCGGCGCCACG
ATCGAACCAGTTTGTCCGCAGCGAGATCTTGCTCGCCGGCAACTTCATGC
GCGCAGTCCCCGGAGACCCATCACGAACAGAATTTCTGATGGTGACGCAC
GTCAATCCGGGAGGCGCGGCGGAGACGCGCGCCGGTGCCATGCTTGTGAA
CTCCCTCTGCGCGACCTCGCCGGTAATTTTTATCCGAAGACTAGATGCAG
CCGCTCAGAAACTTACGCACGAACTCCAGGAGTCCACGGGTGCGGAGTCG
AATCGTATTGTGGATTGA
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