mRNA_F-serratus_M_contig1235.1776.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1235.1776.1
Unique NamemRNA_F-serratus_M_contig1235.1776.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1235.1776.1 vs. uniprot
Match: A0A836CPR2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPR2_9STRA)

HSP 1 Score: 239 bits (609), Expect = 6.230e-73
Identity = 128/258 (49.61%), Postives = 170/258 (65.89%), Query Frame = 2 
Query:   74 MSLDHKGKRLQGRLDFFDRNITQLTKHLQHVVGHHRDGVVQGTTFSTTIKNIAAQEPFADLQDRLVGLAEITERIALERKSVMCDRAKTQVLNKLAQIKATVIVPTQALLQDRERCVRALLKAE-EKAADDQAKGICEETPTAALERRHQLMNAEATVDNNFELFEAQRVEDVKD------------------------------ILDEFLRCELYYHCRALEILTPALVHNGGVDAESARENMREDIEGMNKQLRYT 754
            M+LD KG+ ++GR++FF+RNI +L+KHL  +V  H+ GV  G  FS  +K++AAQEPFADLQDRLV L+E+TERIALERK  +CDRA+ QVL KL +++  VI PT+ALL+DR+ C+++L+KAE E     Q     ++TP A LE RH L N E  VDNN ELFEAQRVEDVK+                              IL EF+RCE+YYHCRALE+L PAL H  GV  + A +N+R ++  +N +L Y+
Sbjct:    1 MALDDKGRMMRGRIEFFERNIHKLSKHLTTMVAQHKAGVDVGMKFSERVKDVAAQEPFADLQDRLVALSEVTERIALERKGALCDRAEQQVLAKLTEVQTRVIAPTKALLKDRDECIQSLVKAETEHDLKVQQGKATKDTPLAILELRHCLRNTEKVVDNNMELFEAQRVEDVKENIAVXXXXXXXXXXXXXXXXXXXXRMSRREILQEFVRCEMYYHCRALEMLAPALQHLSGVHGDVASDNIRHEMASLNTRLNYS 258
[Close]
BLAST of mRNA_F-serratus_M_contig1235.1776.1 vs. uniprot
Match: D7FVS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVS5_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 4.390e-56
Identity = 94/126 (74.60%), Postives = 109/126 (86.51%), Query Frame = 2 
Query:   74 MSLDHKGKRLQGRLDFFDRNITQLTKHLQHVVGHHRDGVVQGTTFSTTIKNIAAQEPFADLQDRLVGLAEITERIALERKSVMCDRAKTQVLNKLAQIKATVIVPTQALLQDRERCVRALLKAEEK 451
            M+LD KG+RL GRL+FFDRN+ QL +H+   VGHH+DGV  G +FST IK IAAQEPFADLQDRLVGLAEITERI+LERK++M DRAK+QVLNKLA IK TVI PTQALLQDR+ CV+AL+KAEEK
Sbjct:    1 MTLDEKGRRLHGRLEFFDRNVAQLIRHISQTVGHHQDGVKHGISFSTKIKTIAAQEPFADLQDRLVGLAEITERISLERKNIMIDRAKSQVLNKLADIKKTVIAPTQALLQDRDSCVKALVKAEEK 126
[Close]
BLAST of mRNA_F-serratus_M_contig1235.1776.1 vs. uniprot
Match: D7G989_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G989_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 2.710e-38
Identity = 68/77 (88.31%), Postives = 73/77 (94.81%), Query Frame = 2 
Query:  524 MNAEATVDNNFELFEAQRVEDVKDILDEFLRCELYYHCRALEILTPALVHNGGVDAESARENMREDIEGMNKQLRYT 754
            MN EATVDNNFELFEAQRVE++KDIL+EFLRCELYYHCRALE+L PAL+H GGVD ESARENMREDIEGMNKQLRYT
Sbjct:    1 MNTEATVDNNFELFEAQRVEEIKDILEEFLRCELYYHCRALEVLGPALMHIGGVDPESARENMREDIEGMNKQLRYT 77
[Close]
BLAST of mRNA_F-serratus_M_contig1235.1776.1 vs. uniprot
Match: W7TTF8_9STRA (FAM92 protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TTF8_9STRA)

HSP 1 Score: 144 bits (364), Expect = 8.050e-37
Identity = 84/228 (36.84%), Postives = 136/228 (59.65%), Query Frame = 2 
Query:   80 LDHKGKRLQGRLDFFDRNITQLTKHLQHVVGHHRDGVVQGTTFSTTIKNIAAQEPFADLQDRLVGLAEITERIALERKSVMCDRAKTQVLNKLAQIKATVIVPTQALLQDRERCVRALLKAEEKA--ADDQAKGICEETPTAALERRHQLMN-------AEATVDNNFELFEAQRVEDVKDILDEFLRCELYYHCRALEILTPALVHNGGVDAESARENMREDIEGMN 736
            +D KG+ LQGRLDF +RN+T L + ++ ++ +H +G       S  +++ AAQE F DLQ+ L+ +AE T+R+A ER+++MC+RA+ +V++    I + V+ PT+ LL+DRER +R     E K   + +Q           A  ++ +L N        +  VD+NF  FE  RV ++K +L+E LR E+ YHCRALEIL P  V    +D + A  +M ++++ +N
Sbjct:    1 MDEKGRVLQGRLDFCERNVTTLRQGVRALLRNHDEGCNVTMDLSQKVRDTAAQEQFIDLQEDLIAIAECTKRLAEERRTIMCERAEERVISTFDLILSRVLHPTRLLLKDRERALRKFRAMERKITFSGEQTLLSMLNLEDDADTKQQKLANYSECAKHTDEVVDSNFRCFEKSRVLEMKAMLEETLRAEMLYHCRALEILEPLCVSMRRLDPDEAMASMTQELDELN 228
[Close]
BLAST of mRNA_F-serratus_M_contig1235.1776.1 vs. uniprot
Match: A0A5A8ECW2_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8ECW2_CAFRO)

HSP 1 Score: 66.2 bits (160), Expect = 2.160e-8
Identity = 45/167 (26.95%), Postives = 79/167 (47.31%), Query Frame = 2 
Query:  203 TFSTTIKNIAAQEPFADLQDRLVGLAEITERIALERKSVMCDRAKTQVLNKLAQIKATVIVPTQALLQDRERCVRALLKAEEKAADDQAKGICEETPT-AALERRHQLMNAEATVDNNFELFEAQRVEDVKDILDEFLRCELYYHCRALEILTPALVHNGGVDAESA 700
            T + +++ +A  EP +  +     LA+   ++   RK V+CDR    ++  L  + +    P + LL DR   ++    A+  AA      +  ++   AA++   Q +NA+A   +       QR  D+K+IL E++R  + +HCRALE  + A     G D   A
Sbjct:   50 TTADSLRELAEVEPDSRFRKVFESLADALGQVERTRKGVLCDRFSETLIEPLNTLISEHFAPAERLLADRVSLLKRAETAQAAAAKATGSAVAVQSKRMAAMDATQQAINADAMAQSAIVRSAHQRAADLKEILSEYVRGRMLFHCRALEGFSRASAVIAGADPSRA 216
[Close]
BLAST of mRNA_F-serratus_M_contig1235.1776.1 vs. uniprot
Match: A0A4D9D8D0_9STRA (Methionine aminopeptidase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8D0_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 6.360e-7
Identity = 43/131 (32.82%), Postives = 65/131 (49.62%), Query Frame = 2 
Query:  371 ATVIVPTQALLQDRERCVRALLKAEEKAADDQAKGICE--ETPTAALERRHQLMN-------AEATVDNNFELFEAQRVEDVKDILDEFLRCELYYHCRALEILTPALVHNGGVDAESARENMREDIEGMN 736
            AT     + LL+DRER  R     E K      + +         A  ++ +L N        +  VD+NF  FE  RV ++K +L+E LR E+ YHCRALEIL P  V    +D + A  +M ++++ +N
Sbjct:  345 ATTADGRRLLLKDRERAFRKFRAMERKVTFSGEETLLSMLNLEDDAATKQQKLANYSECAKHTDEVVDSNFRCFEKSRVLEMKAMLEETLRAEMLYHCRALEILEPLCVSMRRLDPDEAMASMTQELDELN 475
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1235.1776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A836CPR2_9STRA6.230e-7349.61Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FVS5_ECTSI4.390e-5674.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G989_ECTSI2.710e-3888.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
W7TTF8_9STRA8.050e-3736.84FAM92 protein n=2 Tax=Nannochloropsis gaditana Tax... [more]
A0A5A8ECW2_CAFRO2.160e-826.95Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A4D9D8D0_9STRA6.360e-732.82Methionine aminopeptidase n=1 Tax=Nannochloropsis ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1235contigF-serratus_M_contig1235:110751..117609 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.0
Seed ortholog evalue3.2e-15
Seed eggNOG ortholog4787.PITG_01525T0
Hectar predicted targeting categoryother localisation
EggNOG OGs2A8KZ@1,2RYGR@2759,3QEEG@4776
Ec32 ortholog descriptionFAM92 protein
Ec32 orthologEc-00_011340.1
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons7
Model size1328
Cds size684
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929154.123409-UTR-F-serratus_M_contig1235:110750..1113211622929154.123409-UTR-F-serratus_M_contig1235:110750..111321Fucus serratus maleUTRF-serratus_M_contig1235 110751..111321 -
1690962726.4099529-UTR-F-serratus_M_contig1235:110750..1113211690962726.4099529-UTR-F-serratus_M_contig1235:110750..111321Fucus serratus maleUTRF-serratus_M_contig1235 110751..111321 -
1622929154.2538311-UTR-F-serratus_M_contig1235:117536..1176091622929154.2538311-UTR-F-serratus_M_contig1235:117536..117609Fucus serratus maleUTRF-serratus_M_contig1235 117537..117609 -
1690962726.4964519-UTR-F-serratus_M_contig1235:117536..1176091690962726.4964519-UTR-F-serratus_M_contig1235:117536..117609Fucus serratus maleUTRF-serratus_M_contig1235 117537..117609 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929154.1368752-CDS-F-serratus_M_contig1235:111321..1113721622929154.1368752-CDS-F-serratus_M_contig1235:111321..111372Fucus serratus maleCDSF-serratus_M_contig1235 111322..111372 -
1690962726.423868-CDS-F-serratus_M_contig1235:111321..1113721690962726.423868-CDS-F-serratus_M_contig1235:111321..111372Fucus serratus maleCDSF-serratus_M_contig1235 111322..111372 -
1622929154.1518676-CDS-F-serratus_M_contig1235:112130..1122441622929154.1518676-CDS-F-serratus_M_contig1235:112130..112244Fucus serratus maleCDSF-serratus_M_contig1235 112131..112244 -
1690962726.4367294-CDS-F-serratus_M_contig1235:112130..1122441690962726.4367294-CDS-F-serratus_M_contig1235:112130..112244Fucus serratus maleCDSF-serratus_M_contig1235 112131..112244 -
1622929154.1954749-CDS-F-serratus_M_contig1235:112481..1126151622929154.1954749-CDS-F-serratus_M_contig1235:112481..112615Fucus serratus maleCDSF-serratus_M_contig1235 112482..112615 -
1690962726.4472587-CDS-F-serratus_M_contig1235:112481..1126151690962726.4472587-CDS-F-serratus_M_contig1235:112481..112615Fucus serratus maleCDSF-serratus_M_contig1235 112482..112615 -
1622929154.2067838-CDS-F-serratus_M_contig1235:112920..1129841622929154.2067838-CDS-F-serratus_M_contig1235:112920..112984Fucus serratus maleCDSF-serratus_M_contig1235 112921..112984 -
1690962726.4567022-CDS-F-serratus_M_contig1235:112920..1129841690962726.4567022-CDS-F-serratus_M_contig1235:112920..112984Fucus serratus maleCDSF-serratus_M_contig1235 112921..112984 -
1622929154.2174504-CDS-F-serratus_M_contig1235:113413..1134851622929154.2174504-CDS-F-serratus_M_contig1235:113413..113485Fucus serratus maleCDSF-serratus_M_contig1235 113414..113485 -
1690962726.4659288-CDS-F-serratus_M_contig1235:113413..1134851690962726.4659288-CDS-F-serratus_M_contig1235:113413..113485Fucus serratus maleCDSF-serratus_M_contig1235 113414..113485 -
1622929154.2274811-CDS-F-serratus_M_contig1235:116717..1168571622929154.2274811-CDS-F-serratus_M_contig1235:116717..116857Fucus serratus maleCDSF-serratus_M_contig1235 116718..116857 -
1690962726.4743237-CDS-F-serratus_M_contig1235:116717..1168571690962726.4743237-CDS-F-serratus_M_contig1235:116717..116857Fucus serratus maleCDSF-serratus_M_contig1235 116718..116857 -
1622929154.2392778-CDS-F-serratus_M_contig1235:117427..1175361622929154.2392778-CDS-F-serratus_M_contig1235:117427..117536Fucus serratus maleCDSF-serratus_M_contig1235 117428..117536 -
1690962726.4821703-CDS-F-serratus_M_contig1235:117427..1175361690962726.4821703-CDS-F-serratus_M_contig1235:117427..117536Fucus serratus maleCDSF-serratus_M_contig1235 117428..117536 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1235.1776.1prot_F-serratus_M_contig1235.1776.1Fucus serratus malepolypeptideF-serratus_M_contig1235 111322..117536 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1235.1776.1

>prot_F-serratus_M_contig1235.1776.1 ID=prot_F-serratus_M_contig1235.1776.1|Name=mRNA_F-serratus_M_contig1235.1776.1|organism=Fucus serratus male|type=polypeptide|length=228bp
MSLDHKGKRLQGRLDFFDRNITQLTKHLQHVVGHHRDGVVQGTTFSTTIK
NIAAQEPFADLQDRLVGLAEITERIALERKSVMCDRAKTQVLNKLAQIKA
TVIVPTQALLQDRERCVRALLKAEEKAADDQAKGICEETPTAALERRHQL
MNAEATVDNNFELFEAQRVEDVKDILDEFLRCELYYHCRALEILTPALVH
NGGVDAESARENMREDIEGMNKQLRYT*
back to top

mRNA from alignment at F-serratus_M_contig1235:110751..117609-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1235.1776.1 ID=mRNA_F-serratus_M_contig1235.1776.1|Name=mRNA_F-serratus_M_contig1235.1776.1|organism=Fucus serratus male|type=mRNA|length=6859bp|location=Sequence derived from alignment at F-serratus_M_contig1235:110751..117609- (Fucus serratus male)
CACTCGGTAGCAGCGCACACGGTACAAGGTTTGCTCTGCGGCAGCGTCTC
CAACAACGTTGTCAAGGATCATAATGTCTCTCGATCACAAAGGGAAAAGA
CTGCAGGGCCGATTGGATTTCTTCGATCGAAATATCACACAGCTTACCAA
ACACTTGCAGCATGTCGTCGGGCATCACAGAGGCAAGTCCTGAAGATATC
AGATATCGTGTAGGCTTGATGCCCCGAATACCATGTACAGTCAGTCGTAA
AACAGTTTGTTTGTTTGTATCTCACTTACGGCCGATGGGCTTCAACGTGC
TAGGTTACCAATCCAACCTACTGTAACGTTGCTATACGCACGTGATCACT
ACGGATCTTCCCATCTCTCTCCGGTTCTCGCCTACGAATTTTCATCGCGA
TGAAAGTTCAGCACTCTTTTTACACCTCGTCAACCAATATTTGAAATTTT
CCGCTACGGAAGCCAGAGTGAGAATCCTAATTTCTGTAGAGAATCAAACT
CACGACCTCCGCACAAGTGGTCTGCGAGGTTAACATTACAGTAATGTAGA
CCACTCGGGCGACACAAGTACACGTGCTTCAACATCATCTGAAACTGGAA
CCTCGATGCAGGCCCCGTGCTTTCCATCTCAAGACTCTTGTGAAGGCGTT
GTCTGTTCGTCATTCTAAACGTTCCTCTCGCACCGCGTATAGTCTAGGTA
GAGCCTAATGTGAAAATTGTTCATGTATAAGTTAGTTTCCTGTCCCGCAC
AGATGGTGTTGTACAGGGTACGACGTTTAGCACCACAATCAAGAACATCG
CCGCACAGGAACCTTTCGCGGATCTCCAAGACCGACTTGTTGGACTTGCC
GAAATCACGGAAAGGATTGCTCTCGAGAGAAAAAGCGTAATGGTGAGCAA
TCCTGCTACTAGTAGTATCATTGCACTGTCCTGTGGAGTCACTAGTCTAT
GTACGGTAATCACATTTAGCTGAAGAAGGTGGAGAAATCCTTTGTCCAGA
ATAAATGGGATGACTACACACACACATACATACATACATACAAAGGCTGG
GCATCGACCGGAGATGGCGGGCCAACATGCTTCTCGTTCTAAACAGGTAA
ATTAAGTTTTTTCCCCCTGTCCCCGTTCGCGCCTGATAATGTGGTCTCGC
TAGACTGGTTCGGCCGGCTCGTCCCGTCCCAGCTTGCTCGCTCATTTTCC
ACACCCAGGCTGAACCTGATGCTTACTCACGTGCTCCTCTCATTCCTTTG
GACGTAGAGCACACTCTACAACTCGCCATCTACTCAAATACAGACTAAAA
TAATAAACTCCTCGGGTATCGAAAACACCATCGCGTCGCGCCGTTTTTCG
CGAACTATAATACTACCGGTATATTAGTATGGAGAGGGCACGCTGATACA
ATGGCTGTCCTCGACAGGTATCCCCAGAACAGAGAATGCACGTTGGGAGA
GTGAGTTCTCAACTGTGTCCGGGCTCGTCTCCATCCGACGAACGACGTTG
ATCTGCGACAAAACTATTTTTGCCCATACCTTTGACTCACGTTGAGAAGC
GAGTTCGTCAGAACCTTGCCCATCGAGCGACCCTCGCATGGCAGTCTATC
CACATTTCATATGGCGTCGAGAGCGACGGCGATACTCGTTTTCCTGGCAT
CCCATCAAGATGTTTGTGAAGTGACGGGGCGATTGGGTTACCCCATCATC
TGCCCAGTAAAAAAAAAAAAAGTAAAATTTGTAAAGCCTCTCTCCGGCTT
GAGACGTACACCCCAGAAAACGAACACCATGAGCACCAGCCCCAACCGAG
CTTCCAACTCTGCTGGAGAGACCACTGCTCGTTCGGGAACACCATCCACG
TCCTAGGCCGTTACACCTCCGAGCGCAACAAAGACTGGCCAGTTCTCGGC
ACACGAGACTCCTTCCGAAACTTTCTCGTGAGAGCCTCGCCCTCTGCTTT
TTTTGAAGATCACGTGGGGAAGGAGGTGAAATAAAAATAAACCCCTCTCT
TCCAACACTATGAACACCGATCTTGACATACCCGACAACGCCCAAGCTCT
TCTCGACGCGCTTCAGGGGAAGAGCGCCGCCGTAGAATCCACATAACCGG
CGGGTCCATTCCCTGGCACGGATCCGTGATCCAGAAATGAATCATTGCCT
GCCCTCAGGAACACCACCTCCCGATAATTTTGTGAAAGGAACCCTGGACC
TGATGACGCTAGAAGAGAAGGACAACAACGATTCCGACGATTCCGATATC
GGCCTGATGCCGCTGGAAGAGGTGGGCAAAAACAAATCTGAGGACTTCGG
TATAACCCCAAAGTCACGGTGTGAAATCTATCGCGGCGCGCTTCGCCACA
AGTGCGTCGAGGAGATCTTGGGCAACGTTGTCTGTTATGTCGAGGTCGGC
GCCCGTGGTGTTGGAAGGGGAAGGGTTTCATTCTCCGTATGCACCCCCCC
CTGAGCCTCGGATGAAGCAGCCAAGGCAAGACTTTTCGGAAGGATTCTCG
ATTGCCGAGAATGGGTTATTCAGGCGATCCAGGGTCATGGTGTGAAATCT
ATCGTGGCGCTATTCGCCTGAAGTGCGTCGAGGAGAGCCTGGGAACCGTT
GTCTGTTACGGCGAGGTCGGTGCCTGTGGTGTTAGAAGGGGAGGGATTTC
ATTCCTCATAGAGTTCCCTATGGGTCTCGGATGAAATGGTCAGGGTCTGC
CGAAATATTTTTGCCAGGAGTCTCTACTGCCGAGAATGAGTTAGTCTCTG
TCGTGTTCGAGGGTGTGGCGGCCGGCGATGTGGACTGTGTGTATCGCCGA
ATGAGTAGGGGCATCTCTAGCAGGGGCATCGGAAGATCCAATGGGGTTGA
TGCTCTTGGTGTCTGAGGTGTCAGTGTTGTCTGAGACTGGGACGTGTTTG
CCTCCCGGAGGATATTAATAGTTTTGAGCGTTCGACTTTTGGGGAGGGGA
CGGATGATGGGGTCACCCGATCGTCCCGTTGCTCCACACGCATCTTGATG
CAATTGGATCGTATAGAAATGAGTTTGTCGTCCTCGACGCTAAAGGGGGG
ATAGGTTTCCACACGAGGGTTGCTCGATTGAGAAGGTTCTAATTGGCTCG
CTTCTCAGAGTGAGTCAGGGATGTTGGCAAGGAGCCTCGCCACAATTGAA
TGCAGTCCGTCGGAGGTGCACGAGCCCGCAGGACAAAGTTATGACCTTCC
TATTGAGCATGTCTGTTCCGGGGATTTTCCTCTAGTTCGTCCATCGTGCC
AGCGTGCTCTCCACACCGCTGAGCAACCGTCGTGCGGTAACCTATCCACA
AGTATATCTGCTATTAAAAAACGCTGTTCTGTGATCACCGACAAGATCCG
CGCCTCCTGGTGGTTCAACTGATAAAGTAGACTGAAGGAATGCTGTCTTT
GAACCGGAAAATGTGAAGACGTGAGGGAAGAAAGTCTAACCGTGTTGAGG
AGGGGTTCGAAGACCAGCCACTTGCGCTCCGAGGAGGATGACTCCTCTTG
CCGGGCTGCCTGTCTCGATGATCTCGCTCGGTTTTCACAACTTACAGCAT
TTGATGATACTTAGCTTTAGTTAAGGGCTACCCACAAAGAAGTGTAAGCA
GTAGGTGGGTGAGGACTGTACCATCGAAGAACATGGTTTAAGTCGGTGAG
AGAGTTCGTGTCATGGGTAGTCGCGACGACGGTGTATGGTTGGTTTGATT
CCCAGCCGCGCACTCTGCCAGCTGTATCCGACCCAAAGATGCGTTGAAAG
AGTTCGATTCCGAGATGTGGATAGATGAGTAGGCTGTGCTGACCAATAGG
ATGCTATGATAGTTTCCGTAGTGTCGTCATATGATAAGTATTTGGGAGGC
CCGTTCCTTCGCTTGACTTTCCCCCCTTTGATTTAGATTTATTGTGTGAA
CCACCTGTGATGTCTCGTACCTTCACCCATGATGGGGATAGAGGTAGATC
AATAATACACTGGTTTGTATACTCGTCTGACATGTATTCATGTCGAGTCT
GCTCAACCAACGCCTGTAATAGCAAAGCACAACCTCTACCGTGTGAGACC
CATCCCGCTCAGAAACCCTCCATTTTGCTTGCCTGAAAGGTCGGAATCCC
GCAATTTTCTAAACCGATCGGCAGTGTGATCGTGCGAAGACTCAGGTGCT
CAACAAGCTGGCGCAGATCAAGGCGACCGTCATTGTGCCGACGCAGGTGC
GTCAAATCATTGTTTCTTCGGGGCGTAAAGCTATTGTGTATCTAGTGCAT
ACAGTTGTACTATTGAATGACTCTTTCACGATACACTTGGAAGCCGCGAG
CCCACCCCCACCTGAAAGGCGCGGATATGCCTCTGATACTTACTCGTCCT
GAGTTTTACCTGAGTGCTCGACTCAATTTTGTCGCATAATAACTCCTGTT
AGTAGTGTCATCCTCTGAAATATCCACGTTATTTTTGAACTCTTCACATT
TTCGAACGGTGCAGAACATGAAGCCGAATCTGTCGGTGCAGTTCTCTCGA
CTGTGATGCACAGAAAGTACACAAATAGTGGCGACCCTTTTCGCTTGTCG
GAGCTGCAACGAACGGTAGATACTACGAGTATCTATGGGATACATACGCA
CGCGCGAATTGCAACGTTTTCACAGGCTTTACTGCAAGACAGAGAAAGAT
GCGTGAGAGCTTTGCTCAAGGCAGAAGAAAAGGCTGCTGGTGAGCGTGGC
CTTCGCTTGGCGGAGGCCTTGTCATTGTGTAGCATTTACCCGTAACACTC
CCACGCTACCTTAACCCCTCCCTAATAATATTTCTCTCTCGTGCTCAAAT
ACGCCGAAACAAAAACTCGAAACCCATCATCTTGGTGATTGTTGGAATGA
TACAAAATACTGACGACCGCGCCGAGTAAAAACACCAAAACCATCCATGG
TGATTGCAATTATCTGTGGGTTCTTGCGAAACCTGTCGTGCATCGTTTGG
CAAAAAAAAACTCCGATAGTAGCTTCCTGATCGCGATCACGCAGATGATC
AGGCGAAGGGAATATGCGAGGAAACCCCGACCGCCGCTCTCGAGCGACGC
CACCAGCTAATGAACGCGGAGGCAACCGTTGATAACAACTTTGAGCTATT
TGAGGCACAGCGCGTAGAAGATGTAAAGGTGCAATGGCGTAGTACTCATA
TCCATGTTCACCACGGGCAAAAGCAGGCCATGTGAATCGTTGAACACATC
ATTTGGAAACCAGGCGCAAGACCGAATATCTACGGTGATTGGGTACGGAA
CGCGTCCTGCGTTTGATGAGTGCTGTTGAGGCGGGCCTTGGGAGAAAATC
GCCAACGAGGCACCGCTCGCGCGCGTCGCCTCCGATTACGCATTGCCTTC
TTCTTTGTGTCTCAGGATATTCTGGACGAATTTCTTCGCTGTGAGCTGTA
TTACCATTGCCGCGCGCTGGAGATATTGACGCCGGCGCTGGTGCACAATG
GAGGCGTGGACGCAGAGTCCGCCCGCGAGGTACGGTATGTGCGACACGCG
GCCTGTGATAAGGCATACTGTACCACGAACCCAACATAGGGCAGGCAGTC
GTTCGTCTGTTCGGTGTGTGGGGAGATGAATCCACTACTGTGCGCGGATC
TGTGCTGTACGCAGATTCATCGCCTGACACTGTAGAGTAGAGCACCTTTT
ACGTCAGACCCTTTGAGATCGATCCGGGGGTCGCAAAGCTAAAACTTGTA
TTTCACCCGTCGCCTCCGTGGGACGAGATAGGGGGGAAGGGGGTAGCGGG
TGGTGATCTCATAGGAGGGGGGGTGAGCGGCGCATTGAACATTGAAAACA
TGCGAGGTGTGATCCGAGTGGGTGCGGTGCGTTGAACATCGAAAACATGC
GAGGTGTGATCTGAGGGCGGTTGTGATTTTTTTTTTCCTCAGGGGTAAGC
CACCCTGCGAGCACCTTGCGCATTTCCACGGATAATTTTAATAATACTGC
CACATCGTGGGGAAAATTTCAGAGGCAAATGGATAAAACAAGTCATACGG
CAAGAACAAACGAGTCGTCTACTGCACAAACATGTACTACTGTGTAGCAA
GTTGAATAACGAAAAAATAATGAAATATCCCGACACTATATATAACACAT
ACCGGTCGAGACCGCCTGAGTGTACATTGGTCACGAGAAATGTCGTTGCG
ATCTGCGAGGCGGAAAAAAATCATCCACGGACCTCCTTGCTCCGCCTGTC
GTCTGTTTTTTGCCTCCCCCCGCGCCCGCTTCCACAGAACATGCGGGAGG
ATATCGAGGGTATGAACAAGCAGCTCCGCTACACTTAGGAAAACTTCTTC
CAGGAGCGCTTGGAAGAAGCACCAGCTTGTCGTGGTGAAGCATCCGTCCA
GGGAAGTCGCAAGGGATACTGTGCCTTTTGAGGATTGTACTTATGAGCTT
GCGGCTCACTTACGCGATCAATGTGGGCTTTATCATTGCATAACAACATG
GGTATGACTATCGGCATAAGCCTGATACTGTACTGATAGCTTAACCTAGA
ATACATGTAGGCAACTTTCCACCGCCATTTTATCCCTTGTTAATATTTTG
AACTATAATGGAGTAATTAAACAAAGCAACGAGTTTTGTTCGACTCGCGG
GTACACAACACAGAACAAACCGTACAACGGTCTACAAGGTATACTGTAAG
CATGGCGCGTGGTCTCTAGAGGGGTGGTCGGATTCACCCTTTACTGGAAC
ACACATGAACGGGCCTTGGTACATACCTAGGAATGACTCACCTGGTGTGT
ACCAGAGAGCTTACAGCGCTGTTACGCATATTTTCGCTTGATGCCGCATT
CTAACGTCGGAAACCGTTTTGAAGCTAATTTTTTAGGAAATGATGACACG
GGAAAACAG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1235:110751..117609-

>mRNA_F-serratus_M_contig1235.1776.1 ID=mRNA_F-serratus_M_contig1235.1776.1|Name=mRNA_F-serratus_M_contig1235.1776.1|organism=Fucus serratus male|type=CDS|length=1368bp|location=Sequence derived from alignment at F-serratus_M_contig1235:110751..117609- (Fucus serratus male)
ATGTCTCTCGATCACAAAGGGAAAAGACTGCAGGGCCGATTGGATTTCTT
CGATCGAAATATCACACAGCTTACCAAACACTTGCAGCATGTCGTCGGGC
ATCACAGAGATGTCTCTCGATCACAAAGGGAAAAGACTGCAGGGCCGATT
GGATTTCTTCGATCGAAATATCACACAGCTTACCAAACACTTGCAGCATG
TCGTCGGGCATCACAGAGATGGTGTTGTACAGGGTACGACGTTTAGCACC
ACAATCAAGAACATCGCCGCACAGGAACCTTTCGCGGATCTCCAAGACCG
ACTTGTTGGACTTGCCGAAATCACGGAAAGGATTGCTCTCGAGAGAAAAA
GCGTAATGATGGTGTTGTACAGGGTACGACGTTTAGCACCACAATCAAGA
ACATCGCCGCACAGGAACCTTTCGCGGATCTCCAAGACCGACTTGTTGGA
CTTGCCGAAATCACGGAAAGGATTGCTCTCGAGAGAAAAAGCGTAATGTG
TGATCGTGCGAAGACTCAGGTGCTCAACAAGCTGGCGCAGATCAAGGCGA
CCGTCATTGTGCCGACGCAGTGTGATCGTGCGAAGACTCAGGTGCTCAAC
AAGCTGGCGCAGATCAAGGCGACCGTCATTGTGCCGACGCAGGCTTTACT
GCAAGACAGAGAAAGATGCGTGAGAGCTTTGCTCAAGGCAGAAGAAAAGG
CTGCTGGCTTTACTGCAAGACAGAGAAAGATGCGTGAGAGCTTTGCTCAA
GGCAGAAGAAAAGGCTGCTGATGATCAGGCGAAGGGAATATGCGAGGAAA
CCCCGACCGCCGCTCTCGAGCGACGCCACCAGCTAATGAACGCGGAGGCA
ACCGTTGATAACAACTTTGAGCTATTTGAGGCACAGCGCGTAGAAGATGT
AAAGATGATCAGGCGAAGGGAATATGCGAGGAAACCCCGACCGCCGCTCT
CGAGCGACGCCACCAGCTAATGAACGCGGAGGCAACCGTTGATAACAACT
TTGAGCTATTTGAGGCACAGCGCGTAGAAGATGTAAAGGATATTCTGGAC
GAATTTCTTCGCTGTGAGCTGTATTACCATTGCCGCGCGCTGGAGATATT
GACGCCGGCGCTGGTGCACAATGGAGGCGTGGACGCAGAGTCCGCCCGCG
AGGATATTCTGGACGAATTTCTTCGCTGTGAGCTGTATTACCATTGCCGC
GCGCTGGAGATATTGACGCCGGCGCTGGTGCACAATGGAGGCGTGGACGC
AGAGTCCGCCCGCGAGAACATGCGGGAGGATATCGAGGGTATGAACAAGC
AGCTCCGCTACACTTAGAACATGCGGGAGGATATCGAGGGTATGAACAAG
CAGCTCCGCTACACTTAG
back to top