mRNA_F-serratus_M_contig669.17693.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig669.17693.1
Unique NamemRNA_F-serratus_M_contig669.17693.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig669.17693.1 vs. uniprot
Match: A0A6H5JHM9_9PHAE (GT20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHM9_9PHAE)

HSP 1 Score: 302 bits (773), Expect = 6.560e-98
Identity = 151/197 (76.65%), Postives = 168/197 (85.28%), Query Frame = 1 
Query:    1 TLDALSKEHKNMVVVKSPRSRETLSRLLGHTNCVLAAEHGAFIRWGKHARWQSLLPNPDMSWTSDIEPLLQYYTERTPGAVMEVRELGRAWHYRDCDLGHGAWQAKQLHVSLIQLSKRLPIHVFAGDKVLEIIPQALMNQVSRFLEIVVVRFRRLLRFKPVEDVVRLRHDSLEEEKDV-EAFSSVIAGVDMGDVEGY 588
            +LD+LS+E KNMVVVKSPRSR+TL RLLG TNCVLAAEHGAFIRWGKHA WQ LLPN DMSW  DIEPLL+YYTERTPGAV+E RE+  AWHYRDCDLGHGAWQAKQLHVSL+QLSKRLPI V+AGDKVLEIIPQ +  QVS FLEIVV RFRRLL+ KP ED ++L   S E+E+   E FSSVIAGVD+GD +GY
Sbjct:  203 SLDSLSREPKNMVVVKSPRSRDTLDRLLGRTNCVLAAEHGAFIRWGKHAHWQPLLPNVDMSWIGDIEPLLEYYTERTPGAVIESREVSMAWHYRDCDLGHGAWQAKQLHVSLLQLSKRLPISVYAGDKVLEIIPQEMNVQVSHFLEIVVTRFRRLLKSKPPEDSLQLHGQSFEDEEGHGECFSSVIAGVDIGDADGY 399
[Close]
BLAST of mRNA_F-serratus_M_contig669.17693.1 vs. uniprot
Match: A0A836CRD5_9STRA (Glycosyltransferase family 20-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRD5_9STRA)

HSP 1 Score: 172 bits (436), Expect = 8.100e-45
Identity = 84/144 (58.33%), Postives = 104/144 (72.22%), Query Frame = 1 
Query:   34 MVVVKSPRSRETLSRLLGHTNCVLAAEHGAFIRWGKHARWQSLLPNPDMSWTSDIE-PLLQYYTERTPGAVMEVRELGRAWHYRDCDLGHGAWQAKQLHVSLIQLSKRLPIHVFAGDKVLEIIPQALMNQVSRFLEIVVVRFRR 462
            +VVVKSPRSRE L R LG TNCVLAAEHGA +RW  ++RW++ LP  D SW  +I+ PL    T     AV        AWHYRDCDLGHGAWQAKQLHVSL+Q+++ LPI V+AGD+VLEI+PQA++  +  FL+ VV R R+
Sbjct: 1065 VVVVKSPRSREALERCLGQTNCVLAAEHGALMRWSLNSRWEAQLPGLDTSWLREIQNPLDVIKTREVSVAVXXXXXXXXAWHYRDCDLGHGAWQAKQLHVSLLQMARNLPIIVYAGDRVLEILPQAMLGHLDSFLDNVVTRVRQ 1208
[Close]
BLAST of mRNA_F-serratus_M_contig669.17693.1 vs. uniprot
Match: A0A7S1UL28_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UL28_9STRA)

HSP 1 Score: 157 bits (396), Expect = 1.230e-39
Identity = 73/135 (54.07%), Postives = 96/135 (71.11%), Query Frame = 1 
Query:    4 LDALSKEHKNMVVVKSPRSRETLSRLLGHTNCVLAAEHGAFIRWGKHARWQSLLPNPDMSWTSDIEPLLQYYTERTPGAVMEVRELGRAWHYRDCDLGHGAWQAKQLHVSLIQLSKRLPIHVFAGDKVLEIIPQA 408
            L+AL     N VV+ S RS E++  LLG+ N VL AE G FI+WGK + W+  +P  D SW  D+E +L+YYTERTPG+ ME +    AWH+RDCDLGHGAWQAKQL VSL  LS+RLP  V++G+K++E+  Q+
Sbjct:  628 LEALCANPTNAVVIVSTRSPESIDALLGNLNAVLVAESGWFIKWGKGSAWECQVPYLDTSWRDDVERVLEYYTERTPGSFMESKSHSIAWHFRDCDLGHGAWQAKQLQVSLTNLSRRLPFCVYSGNKMIEVAQQS 762
[Close]
BLAST of mRNA_F-serratus_M_contig669.17693.1 vs. uniprot
Match: A0A8J2X0D0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X0D0_9STRA)

HSP 1 Score: 143 bits (361), Expect = 7.590e-35
Identity = 77/158 (48.73%), Postives = 106/158 (67.09%), Query Frame = 1 
Query:    4 LDALSKEHKNM-VVVKSPRSRETLSRLLGHTNC---VLAAEHGAFIRWGKHARWQSLLPN--PDMSWTSDIEPLLQYYTERTPGAVMEVRELGRAWHYRDCDLGHGAWQAKQLHVSLIQLSKRLPIHVFAGDKVLEIIPQALMNQVSRFLEIVVVRFR 459
            L+AL  + +N  VV+ S RS ETLS++    NC   VLAAE G  IRWG +  ++  + +   D+SW  D EPL+ YYTERTPG+V+E +  G AWHYRDCDL HGAWQA+QL V+L +L+K +P+ VF+GDK +E+ P  L   V   LE+ + +F+
Sbjct:  719 LEALCNDPQNRAVVILSARSAETLSKIFEGINCDSLVLAAEEGLSIRWGPNEPFEMQVSDFDLDLSWLDDAEPLIAYYTERTPGSVVERKVSGLAWHYRDCDLNHGAWQARQLQVALGELAKHVPLSVFSGDKFIEVRPMRL--SVPNVLELTLKKFQ 874
[Close]
BLAST of mRNA_F-serratus_M_contig669.17693.1 vs. uniprot
Match: F0Y4H1_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4H1_AURAN)

HSP 1 Score: 135 bits (340), Expect = 2.710e-32
Identity = 66/133 (49.62%), Postives = 89/133 (66.92%), Query Frame = 1 
Query:   34 MVVVKSPRSRETLSRLLG-----HTNCVLAAEHGAFIRWGKHARWQSLLPN--PDMSWTSDIEPLLQYYTERTPGAVMEVRELGRAWHYRDCDLGHGAWQAKQLHVSLIQLSKRLPIHVFAGDKVLEIIPQAL 411
            +VVV S R+ + LSR+       H N  LAAE G  +RW     ++  + +   DMSW  D  PL++YYTERTPG+V+E +E G AWHYRDCDL HGAWQA+QL V+L +L+K +P+ VF+GDK +E+ P  L
Sbjct:  511 LVVVLSARTADALSRIFAPIAEKHVNLALAAEEGLSVRWRGDEPFEMQVSDFDLDMSWADDAAPLIEYYTERTPGSVVEKKESGLAWHYRDCDLNHGAWQARQLQVALGELAKHVPLSVFSGDKFIEVRPMRL 643
[Close]
BLAST of mRNA_F-serratus_M_contig669.17693.1 vs. uniprot
Match: A0A2P4X3L8_9STRA (Trehalose-phosphatase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X3L8_9STRA)

HSP 1 Score: 135 bits (339), Expect = 2.940e-32
Identity = 65/137 (47.45%), Postives = 91/137 (66.42%), Query Frame = 1 
Query:    4 LDALSKEHKNMVVVKSPRSRETLSRLLGHT--NCVLAAEHGAFIRW-GKHARWQSLLPNPDMSWTSDIEPLLQYYTERTPGAVMEVRELGRAWHYRDCDLGHGAWQAKQLHVSLIQLSKRLPIHVFAGDKVLEIIPQ 405
            L  L+K+ +N VV+ S RS     +       N VLAAE+G +++W G++  W  ++PN DMSW   + PLL+YYTERTPGA +E +E   AWHYRDCDL HG WQA +L VSL ++++ LP+ V  G++ LE+ PQ
Sbjct:   48 LSMLTKDPRNTVVLVSARSTSVCEQWFAGLSGNLVLAAEYGVYVKWVGENEYWHCMVPNMDMSWWEHVVPLLEYYTERTPGAYIERKESSVAWHYRDCDLDHGLWQASELLVSLREITRSLPVSVCPGNRYLEVRPQ 184
[Close]
BLAST of mRNA_F-serratus_M_contig669.17693.1 vs. uniprot
Match: A0A3F2S1Y1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S1Y1_9STRA)

HSP 1 Score: 134 bits (337), Expect = 3.900e-32
Identity = 65/137 (47.45%), Postives = 90/137 (65.69%), Query Frame = 1 
Query:    4 LDALSKEHKNMVVVKSPRSRETLSRLLGHT--NCVLAAEHGAFIRW-GKHARWQSLLPNPDMSWTSDIEPLLQYYTERTPGAVMEVRELGRAWHYRDCDLGHGAWQAKQLHVSLIQLSKRLPIHVFAGDKVLEIIPQ 405
            L  L+K+ +N VV+ S RS     +       N VLAAE+G +++W GK+  W  ++PN D SW   + PLL+YYTERTPGA +E +E   AWHYRDCDL HG WQA +L VSL ++++ LP+ V  G++ LE+ PQ
Sbjct:  322 LSMLTKDPRNTVVLVSARSTSVCEQWFAGLSGNLVLAAEYGVYVKWMGKNEYWHCMVPNMDTSWWEHVVPLLEYYTERTPGAYIERKESSVAWHYRDCDLDHGLWQASELLVSLREITRSLPVSVCPGNRYLEVRPQ 458
[Close]
BLAST of mRNA_F-serratus_M_contig669.17693.1 vs. uniprot
Match: A0A421GJV8_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421GJV8_9STRA)

HSP 1 Score: 134 bits (337), Expect = 5.530e-32
Identity = 65/137 (47.45%), Postives = 90/137 (65.69%), Query Frame = 1 
Query:    4 LDALSKEHKNMVVVKSPRSRETLSRLLGHT--NCVLAAEHGAFIRW-GKHARWQSLLPNPDMSWTSDIEPLLQYYTERTPGAVMEVRELGRAWHYRDCDLGHGAWQAKQLHVSLIQLSKRLPIHVFAGDKVLEIIPQ 405
            L  L+K+ +N VV+ S RS     +       N VLAAE+G +++W GK+  W  ++PN D SW   + PLL+YYTERTPGA +E +E   AWHYRDCDL HG WQA +L VSL ++++ LP+ V  G++ LE+ PQ
Sbjct:  244 LSMLTKDPRNTVVLVSARSTSVCEQWFAGLSGNLVLAAEYGVYVKWMGKNEYWHCMVPNMDTSWWEHVVPLLEYYTERTPGAYIERKESSVAWHYRDCDLDHGLWQASELLVSLREITRSLPVSVCPGNRYLEVRPQ 380
[Close]
BLAST of mRNA_F-serratus_M_contig669.17693.1 vs. uniprot
Match: A0A329SM09_9STRA (Alpha,alpha-trehalose-phosphate synthase [UDP-forming] A n=13 Tax=Phytophthora TaxID=4783 RepID=A0A329SM09_9STRA)

HSP 1 Score: 135 bits (339), Expect = 6.230e-32
Identity = 65/137 (47.45%), Postives = 91/137 (66.42%), Query Frame = 1 
Query:    4 LDALSKEHKNMVVVKSPRSRETLSRLLGHT--NCVLAAEHGAFIRW-GKHARWQSLLPNPDMSWTSDIEPLLQYYTERTPGAVMEVRELGRAWHYRDCDLGHGAWQAKQLHVSLIQLSKRLPIHVFAGDKVLEIIPQ 405
            L  L+K+ +N VV+ S RS     +       N VLAAE+G +++W G++  W  ++PN DMSW   + PLL+YYTERTPGA +E +E   AWHYRDCDL HG WQA +L VSL ++++ LP+ V  G++ LE+ PQ
Sbjct:  600 LSMLTKDPRNTVVLVSARSTSVCEQWFAGLSGNLVLAAEYGVYVKWVGENEYWHCMVPNMDMSWWEHVVPLLEYYTERTPGAYIERKESSVAWHYRDCDLDHGLWQASELLVSLREITRSLPVSVCPGNRYLEVRPQ 736
[Close]
BLAST of mRNA_F-serratus_M_contig669.17693.1 vs. uniprot
Match: W2FY48_PHYPR (Trehalose-phosphatase n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=W2FY48_PHYPR)

HSP 1 Score: 134 bits (338), Expect = 7.730e-32
Identity = 64/137 (46.72%), Postives = 91/137 (66.42%), Query Frame = 1 
Query:    4 LDALSKEHKNMVVVKSPRSRETLSRLLGHT--NCVLAAEHGAFIRW-GKHARWQSLLPNPDMSWTSDIEPLLQYYTERTPGAVMEVRELGRAWHYRDCDLGHGAWQAKQLHVSLIQLSKRLPIHVFAGDKVLEIIPQ 405
            L  L+K+ +N VV+ S RS     +       N VLAAE+G +++W G++  W  ++PN DMSW   + PLL+YYTERTPGA +E ++   AWHYRDCDL HG WQA +L VSL ++++ LP+ V  G++ LE+ PQ
Sbjct:  600 LSMLTKDPRNTVVLVSARSTSVCEQWFAGLSGNLVLAAEYGVYVKWVGENEHWHCMVPNMDMSWWEHVVPLLEYYTERTPGAYIERKDSSVAWHYRDCDLDHGLWQASELLVSLREITRSLPVSVCPGNRYLEVRPQ 736
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig669.17693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHM9_9PHAE6.560e-9876.65GT20 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A836CRD5_9STRA8.100e-4558.33Glycosyltransferase family 20-domain-containing pr... [more]
A0A7S1UL28_9STRA1.230e-3954.07Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
A0A8J2X0D0_9STRA7.590e-3548.73Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0Y4H1_AURAN2.710e-3249.62Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A2P4X3L8_9STRA2.940e-3247.45Trehalose-phosphatase (Fragment) n=1 Tax=Phytophth... [more]
A0A3F2S1Y1_9STRA3.900e-3247.45Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A421GJV8_9STRA5.530e-3247.45Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A329SM09_9STRA6.230e-3247.45Alpha,alpha-trehalose-phosphate synthase [UDP-form... [more]
W2FY48_PHYPR7.730e-3246.72Trehalose-phosphatase n=2 Tax=Phytophthora parasit... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig669contigF-serratus_M_contig669:290513..299409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.3
Seed ortholog evalue2.2e-29
Seed eggNOG ortholog115417.EPrPW00000019920
KEGG rclassRC00005,RC00017,RC00049,RC02748
KEGG koko:K16055
KEGG ReactionR02737,R02778
KEGG Pathwayko00500,ko01100,map00500,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Alpha,alpha-trehalose-phosphate synthase UDP-forming . Source PGD
EggNOG OGs1MCCV@121069,COG1877@1,KOG1050@2759
EC2.4.1.15,3.1.3.12
COG Functional cat.G
CAZyGT20
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Exons7
Model size857
Cds size855
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932049.6021223-CDS-F-serratus_M_contig669:290512..2905361622932049.6021223-CDS-F-serratus_M_contig669:290512..290536Fucus serratus maleCDSF-serratus_M_contig669 290513..290536 +
1690964120.3429844-CDS-F-serratus_M_contig669:290512..2905361690964120.3429844-CDS-F-serratus_M_contig669:290512..290536Fucus serratus maleCDSF-serratus_M_contig669 290513..290536 +
1622932049.6191766-CDS-F-serratus_M_contig669:291106..2912381622932049.6191766-CDS-F-serratus_M_contig669:291106..291238Fucus serratus maleCDSF-serratus_M_contig669 291107..291238 +
1690964120.3572128-CDS-F-serratus_M_contig669:291106..2912381690964120.3572128-CDS-F-serratus_M_contig669:291106..291238Fucus serratus maleCDSF-serratus_M_contig669 291107..291238 +
1622932049.6310382-CDS-F-serratus_M_contig669:294754..2948471622932049.6310382-CDS-F-serratus_M_contig669:294754..294847Fucus serratus maleCDSF-serratus_M_contig669 294755..294847 +
1690964120.367066-CDS-F-serratus_M_contig669:294754..2948471690964120.367066-CDS-F-serratus_M_contig669:294754..294847Fucus serratus maleCDSF-serratus_M_contig669 294755..294847 +
1622932049.6505485-CDS-F-serratus_M_contig669:295341..2954761622932049.6505485-CDS-F-serratus_M_contig669:295341..295476Fucus serratus maleCDSF-serratus_M_contig669 295342..295476 +
1690964120.3783896-CDS-F-serratus_M_contig669:295341..2954761690964120.3783896-CDS-F-serratus_M_contig669:295341..295476Fucus serratus maleCDSF-serratus_M_contig669 295342..295476 +
1622932049.669728-CDS-F-serratus_M_contig669:296846..2969811622932049.669728-CDS-F-serratus_M_contig669:296846..296981Fucus serratus maleCDSF-serratus_M_contig669 296847..296981 +
1690964120.3934333-CDS-F-serratus_M_contig669:296846..2969811690964120.3934333-CDS-F-serratus_M_contig669:296846..296981Fucus serratus maleCDSF-serratus_M_contig669 296847..296981 +
1622932049.6873047-CDS-F-serratus_M_contig669:298453..2985311622932049.6873047-CDS-F-serratus_M_contig669:298453..298531Fucus serratus maleCDSF-serratus_M_contig669 298454..298531 +
1690964120.4125295-CDS-F-serratus_M_contig669:298453..2985311690964120.4125295-CDS-F-serratus_M_contig669:298453..298531Fucus serratus maleCDSF-serratus_M_contig669 298454..298531 +
1622932049.7073174-CDS-F-serratus_M_contig669:299149..2994071622932049.7073174-CDS-F-serratus_M_contig669:299149..299407Fucus serratus maleCDSF-serratus_M_contig669 299150..299407 +
1690964120.423274-CDS-F-serratus_M_contig669:299149..2994071690964120.423274-CDS-F-serratus_M_contig669:299149..299407Fucus serratus maleCDSF-serratus_M_contig669 299150..299407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig669.17693.1prot_F-serratus_M_contig669.17693.1Fucus serratus malepolypeptideF-serratus_M_contig669 290513..299407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig669.17693.1

>prot_F-serratus_M_contig669.17693.1 ID=prot_F-serratus_M_contig669.17693.1|Name=mRNA_F-serratus_M_contig669.17693.1|organism=Fucus serratus male|type=polypeptide|length=285bp
TLDALSKEHKNMVVVKSPRSRETLSRLLGHTNCVLAAEHGAFIRWGKHAR
WQSLLPNPDMSWTSDIEPLLQYYTERTPGAVMEVRELGRAWHYRDCDLGH
GAWQAKQLHVSLIQLSKRLPIHVFAGDKVLEIIPQALMNQVSRFLEIVVV
RFRRLLRFKPVEDVVRLRHDSLEEEKDVEAFSSVIAGVDMGDVEGYSSGN
NSGDDFGSVQGRDSGRFTITPAFHMTDEQQQQQQQLQQLLTLKLPHLKLL
DPEDSSSELGADAADDAAGRAVGSVAEAVGNISSR
back to top

mRNA from alignment at F-serratus_M_contig669:290513..299409+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig669.17693.1 ID=mRNA_F-serratus_M_contig669.17693.1|Name=mRNA_F-serratus_M_contig669.17693.1|organism=Fucus serratus male|type=mRNA|length=8897bp|location=Sequence derived from alignment at F-serratus_M_contig669:290513..299409+ (Fucus serratus male)
ACCTTGGACGCCCTCTCAAAAGAGGTGTGTACGCACGAGCTGACCTTATC
TGACCCGACTTGACCTGACCTGGCCTGACCTGACCTGACCTGACTTCGTA
CGGTGTATGCACATGTTTGAACGGGTTCCTAGGTGTGTTCCCGTGTACTG
TGGCTATCTTTGTGTGTAACTGTCTATTGTGCGTGCTTGGGTGTTGTATT
TGTGTGTGGAGTGTAAAGTGTCGAGGGTAGAGTATCTGTAGAGGCATTCG
AACCTCTTTTCCATCACCGAAATAACTGTAGAAATTATACAGTATTTCCA
TATATTTTTTTAATTGATAGGTTGAAATGCATCCTTGAAAAAATATGCCC
ATGGAGAGAGAGTACCTCGAACGGTGTTTTTTTTTCATGCGAAACGTAAA
ATAAATGTAATGCTACGTGTGCTCTTATGTGAAATATACTGTGTCTTGTA
GACGGTCCGGACCGTACCATGATATGTACTGAGATATGTGCTGCACGAAA
CGTATTACTTTTAGTACAGTAGCGCGAAAAGTACCGTGAGATGTATGGCT
GCTGTGAATCGGGCCCTTGTTTTCACCCGGGACACCTACCTCAGCACAAG
AACATGGTGGTTGTCAAGAGCCCCCGCAGCCGCGAGACCTTGAGTCGGCT
GCTGGGACACACGAACTGCGTACTGGCCGCTGAACACGGCGCCTTCATCC
GCTGGGGGAAGCACGCCCGTTGGCAGGTATTTGTAAGGAGAACCTGTGCG
TGTGTGTGTGTGTGTGTGTGTGTGTGTATTTATTAAGTTGCACATAACCG
CGCAATCCGGCCCTGTCATCCTAGTTATGATATGCCACTCGCATTGATCC
TCCCAAGGGAATCAATAATACTTATTACGAAAACCTTGTGTGTGTGTGTG
TGTGTGTGTGTGTATTTATAAAATTGCACATAACCGCGCAATCCGGCCCT
GTCATCCTAGTCATTCTATGCCACTCGCATTGATCCTCCCGAGGGGGGAT
CAATGATACTTATTACGAAAACCTCTGATCAGACGCGACAAAGGGGACAC
GCTCTCTCTACTTGTACAATTCTTACTTAAGCTCAGAGTTCCTTGTGCTC
CCCCCCCCCTGCTTCCTTGAAATTCTTTACATTATCTGAGTTGGCAGCTA
CTGAACCGACCCTTTCTTTTCTACATCTCTTCCTCTTTCCACCGAAGTCT
CCCCCGTTTTCCCCTTGGCGTCTACAACTATGTGTGTGTGTGTGTATTTA
AAGAAAAATCAGAACATCACCTAGACTTTTTGAGCATCTCCCGTAGGGGG
AGGAAATGTCAAAACGTTTAGGCGGGGTCAAAGGCTGCAGTGACAAAAAC
CTCTTCATGGTATTAAACAGGTTTCCCAATGCATATAACAATGGGTCAGC
AGTATAATGTCGGGGAGAAACCCACCGTTATACTGTACATTTACATTAAT
CTCCATGCAGGGACACCATAAAAGCATTAGACAAAAACCAGAGACAGAGT
AGTGCTACCTCCAAATGGTATTAGTAATATTGTACATACAAAGCCCAAAC
ATGGTATATTAAACAATCATGCCTCAACATATTTATTAAATTGCACATAA
CCGCGCAATCCGGCCCTGTCATCCTAGTCATTCTATGCCACTCGCATTGA
TCCTCCCGAGGGGGGATCAATGATATTTATTACGAAAACCGTGTGTGTGT
GTGTGTGTTGTTCTGTATGTTGTTTTTCCTGTTGTTTTTTGTGGTTCGAT
ACGGTAGATACTTGGTTTTTAATATTTTTTTCTCTTTTTTTGTTTGTTTG
TTTGTTTGTATGATGGCACAGGCTCTATGCATAGCAGCGTACAGTAGTGC
AATTAATATTATAGTAAATTATAGTAGAGTAGCAACTAGTGTGCCTGAGG
CCCATGAAGATCATACGCACACATCCATACACAGGGCAGTGCTCATACAC
AGCTACAGAGGCGTCAAGAGGGTCTGGGTAGCGACGTAATCAACGTTAAC
CGTACCAGGTTTCGAGCTACCAAGGCGTGTTGTAGTCTGCTTTGGTTTTG
GCACTCTTTACCAAGGCGTGACATCCCCCTTTCTTGCCACCGGGCGAGAG
AGAGAGAGAGAGAGAGATTACGGCCAACGTTCGCCCACATACATACACTA
ACCAGGATTTCACCACAATGTGATCGTGTGCGAGCAGCTCCTCCTAGAAC
TTTTTTTTTTTTTTGTATCTTGTAATGGTATGGACAGAGAATGCTATTAT
TAATAATAATAGTCGTTATTAGCTCTACTCGACGTAGCAGCGCGTGTGTG
AATGTAATATTATTAATACTGGTAGTCGTTATTAACTTGTACGAGGTACC
AAGGGTACAAGGTACAAGCATGCTTTTTCCCCCCCCTCTCAAATGGGGCT
ATCAATAGGCACCCCAAGTACTTGTGTACTGTACAGAGTGATTGTAATCG
AATCAGAAATCGAATCAGAAATCGAATCAGGAATCGAATGCACAACAGTA
ACAGGTACTCCGTAGTATATTGATATTATATTGATATTAACAGTACTACT
GTATCATCGGGTACGAAACGGTGTTGGGCATTGGTATTTTTCTTGTCTTG
TACGAAGCTTTACTGTACCCTGTAACGGTGCTGTTGGTGTTCTCTTTTTT
TGTTGGTCTCTTCCGTACGAAGCATTGTACCTTATAACGGTGCTGTTGTT
GGTGTTCTCTTTTTTTGAAGAAAATACAGAACGCACCTAGACCTTCTGAG
CATCCCCCAGTCAGGGGGAAAAAATGTCAAAATGTTCAGGTCGGCTCAAA
GGCTGCAAATACAAAACCTCTTCATGGCATTCAAACGGGTTCCCCTATGG
TAGGGCCGTTGGGTCAACAGTATAATATCGGGGAGAAGCCCACCGTTGTA
CTGTACACTTACATTGATCGCCATTAATTGGTCCATAAAAACCAGCCAAG
ACAAAACAACAGTAGTACATCATCAAACTAAAGACGAATCCAATACAACA
TTTGAAACGATTACAGAGGACCACGGCGATGTAGGCATAATCCAAGTACA
CGAATCCGGACGAAAAGCAGAACGATCACACAATCGGTAGAGGCGCGGAA
ATTGAGTGACCTCGATAAACTCAGGGGACGCACAGACCCGATGGCGTATG
ACCCCGCGTTTCAGAAACACAAAGGGAAGAGCGTCTGTTTGCCGATCAAG
AGGGCCTCAAACAACGGGAGGAATCCACCCGTTGACCCGAAATGCCTTCA
ACCAGTCTTTTTTTTTTTTTTTTCCTTTGAGTATCTTGGAGATTGAGCAG
GATCTTCTCAATGCGGGACTATCTAACTGTATCGTTGACGGCAGTAAATT
TTATCTCGCGAGACCAAATTCTCAGCCATCTGGCAATATTTTTTAACGAT
CTAGAGGGGTTTTAATAAGGGAATAATCCACAAAACAAAACCAAAAATCA
CAAAATCACCATGACGAGGCTGAGAAGGCAGGATGACCACAACCAATACA
ACTGGTTGATCCATACTCTGATCTTACATGTTGTCTCTTCCGTACCACGG
TGCTGTTGTTGGTGTTCCCTTTGTTTGTTTGTTTCTTACTGTACCTTATA
ACGGTGCTCTTGTTGGTGTTCCCTTTGTTTGTTTCTTCCGTACGAAGCAC
TGTACCTTATAACGGTGCTCTTTTTGGTGTTCCCTTTGTTTGTTTCTTCC
GTACGAAGCACTGTACCTTATAACGGTGCTCTTGTTGGTGTTCCCTTTGT
TTGTTTGTTTCTTCCGTACGAAGCACTGTACCTTATAACGGTGCTCTTTT
TGGTGTTCCCTTTGTTTGTTTCTTCCGTACGAAGCACTGTACCTTATAAC
GGTGCTCTTGTTGGTGTTCCCTTTGTTAGTTTGTTTCTTCCGTACGAAGC
ACTGTACCTTATAACGGTGCTCTTGTTGGTGTTCCCTTTGTTTGTTTCTT
CCGTACGAAGCACTGTACCTTATAACGGTGCTGTTGTTTCCTTTTTTGTT
TGTTTCTGTGTACCTCATGACGGTATTATAGTTGGCGTTTTCCTTTTTTT
AGTAATAGTTTGTTCTTTACGAAGTACGTGGTAATACTATGTACCCTTAT
TTTCATGATTTTAGCGTTCCCCCTTCTTTTTTTTCTTTTCCCGACCCGTT
CTGTTTCTTTTTTGATGATTTTAGCGTCACCTTCTGTTTCTTTTCTCGAC
CCCATACATACATTGTTTTCGTCCGTTCATTTCATGCCCCAGTCGCTGCT
GCCGAATCCCGACATGAGCTGGACGTCAGACATCGAACCGCTGTTGCAGT
ACTACACGGAACGAACCCCTGGGGCCGTCATGGAGGTATGTACGGTGATA
CAGCATCCCTCCCTTCCCTGCTCCCTTATCGTGCAATCTGGGGCACAAAC
ATGTTTCTTATCACACATTTGAACAGCAATACGCACTATTATACTGTCCT
AAGATCAAAGTACTCTTACTGCTGTGAATAATAATATCGCTTTGCTGGCG
ACCTTACAGAGGGCTGGTTGGATGAAGTAATGTATGTCGCCCTAGTTTCT
TCAAATTGTAGGAACAACACGCTGAATAAATGTGTAAACCAACCACAGCA
ATACCGATGGACTCTTAAGATTTGACCCTAAAGAGCTAGGGGTAATTGTG
TCGCTCGGAGTACGCAATGGCTGCCACAGGCGGTCAGTAATGTGATCCCA
GGGCGAGATTTTAAGCTCCTCATGTGCGGTGCATCTGCATAATTGTAGCT
CTACTGTTATAATAGATGCACGGAGTGCCCCAGTGTAAAGCGATGGATCG
TTTTAAGGTATAACGGCCGTCGCTGGCAGGTGCGTGAGCTGGGAAGAGCC
TGGCACTACAGGGACTGCGATCTCGGACACGGTGCTTGGCAGGCCAAGCA
GCTCCATGTGTCCCTCATCCAGCTGTCCAAGAGGCTTCCCATCCATGTCT
TCGCAGGAGACAAGGTAACTTAAGTACATGAAACCAGGTACATTGCAACA
TACACGTGTAATTAGAAAGATGATCTCGAGACTCCTGTCCGACTGATTTG
GTGGTTTGGATTGTTGAGATGCCTACATAAATTATATTTAACATAGACCT
ACAACATATGGATAATATGGATAAGATAATCGAGATTGTTGTCTGGCTGG
TTTTGATGGTTTGGATTATCCGGTTATCTTTAAAATAATGTCGAATGTAC
GTTCTGTTGAAGGAAAAAAGTGGTGCACGAAATTCGAGTGACTGATTCGG
AACGATATATACTTAGTGGGCGTTGGGAAGAGAGGCGCGCATTAATTGGT
ACATGGTGACCTGCCAAGGCAGCACCCGTTTGGAACTACCTTGATGTTCA
CTGGCTCTGTGCCGGCGGACTCTCGGCAGTGAACGCCATCGGTACGCAAT
TGCGTGACCCGATAAACTCGGGACTGACCCGATGACGTATGGTGGTTTTG
AAGTGAGAAATGACCGCCGCCGCGGAACTCGGGAGGAATCCCGTAAGTAA
GCACCAGATTCAGCCTGACTATGGAGATGAGCAGGCTGACGCGGGACGGG
ACTGCCGAACCAGTCTCGCGAGACCAAATTCTCAGGCGCGAACGGGGACA
GGGTAATATTCATTTTCCCTGTTCAGCTGACCACGAGCAGGATTGGCAAT
CTTGCCCGGTTGATCCATACTGTTGCTGTATGTGTGACCATACATACACA
TATTATTTACTTGTTTATCATTTTATTTATTTATTCTCTGTACCCATCCT
CACTTCTCCCCGTCATCCCCTCCTCCCCTCCTCCAGCTGAGCGCTATCAT
ACTGCCTGTGTATGAACGCACCGAGTTGTTCCTATGCACGCGCGCTCGTG
TGCCTTTGCGCCCACCTATGAACAGTCTCAACAATACTTGTAGTGGTATC
CAATAGACTACTCTACCCCGAACGTACGTGTACCAGGTCTGTTGTTGTCG
ACTAACGATTGAAGACTGTTCGGCTGCTCTGTGCTGTGTACCAGGTCATC
GTTTGGATTTTTTTTTTTTTTTGTGACGGACGGTACTCTAAATACTGAAC
TCGTACATGTACTACTAATACAGTGGTAACAATGGTAACAAATACTAATA
CACCAGTATTAGTATACGGTAACCTCTAACGGCAAAAATGACAACCGAGA
CAGCTTGTGGGATGGGTGTTACTAAATTATTATAATATTTAATATTAATA
AGCTCTTACGTAATTTTATTAAGAAAAATCAGAACGCGCCTATACCTTTT
TTACGTAATGCTTTTTTTTTTCCTTCTTCTTTTTATTTTATTTTATTTTT
TCCATTTTTTTTTCTTCTTTTTCTTGCGAGGAAGGTGCTGGAAATCATCC
CTCAGGCCCTCATGAACCAGGTGTCTCGCTTCCTGGAGATTGTCGTGGTG
CGGTTCCGGCGGCTGCTAAGGTTCAAGCCCGTGGAAGACGTCGTTCGTCT
TCGCCATGACAGCTTGGAGGTACAAAACGCCTCCTCTAGTGGTGCGCTAT
CGCTAGTGATGCTATCGCTTGCCTGTACCGGTGTAAGGATCACTGCCGAA
CGAACGCTGACACGTTTTGGTTTTCTCGTGAACATTTACCGTTGGAGGGG
CGTAATGTACTCTATTTAGTGTGCTCTACTTGCGAGTGATTTTGTTTTAT
TCATAGGTTTCTACACGAGCGGCAACAATGGTACTCGTTCTCCTGTTTCG
TTATCCGTTGTTCGTGGTTAGTAGTTATTTAGTAGAGTATAGTATTGTTG
TTGTTGTTGTCTTCACATTAAAAACCGTTCCGCTCTCTGCTCAGTACCTT
CCAACATCCGTACTGGTCCAACTGAAGCGAACGCCTTCCGTGGTCATAGG
CTAACTTCCCCCAAAAAGGGTATATATTATGAGAAATGAACGAGAAATAA
AAGGACCCAGAGGAGTCAACACACAGGCGATAATAGGAACCCCCCTCCCT
CCGAAAAAAATAAAATAAAATAAAATAAAATAAAATAATAAAATAATAAA
AAGGGGATAGATAGAGCCCATCGCTCCCACTCGACACGCGAGGCCAAGCA
AAATTAAAACAAACGAAAAGAATCAAGGATCACCAACCAAGACACACATG
ATTCTATCCTTGTACCCCTACTAGGCCGGGGTGTATTCGCCGCCGGGTTT
GCACCGGCCAGGCCATTCCCTACACATACCTACAAATGTGTGGGGGGCTC
AAGATCCCGAGCATCTCTTTTATTTAAAAGCATTTATTTATTGTAATGCT
CGGGAAGTGTAACGTGTAATATTTTGTTAACTTGGCTTTTATGGTCCAAT
TTTTTTGCGCCTGTGATTCTCGAATTGTTTGTTCCAATGATACAGCCAGT
TATTGTTAATACCGGAGTACTAAATATTTCGACATTCAAATATCCGGACA
TTTTGGCGAATATTTCCAAATATTTTCCAATATTTATACACCGCTGTCGT
ACTCTGCACGGTGCGTCGACAGTATGCATGTAAGTGCGTATGTTTATTAA
ATTGCACATAACCGCGCAATCCGACCCTGTCATCCTAGTCATTCTATGCC
ACTCGTATTGATCCTGCCACGGGGGGATCAATGAAACTTACTACGAAAAC
CTCTGATCAGACGCGACAAAGGGGACACGCTCTCTCTACGTGTATGTATG
GTCACGGCATGTAGCAGAGTATGGATCTACCGGGTAAGGATGCCAATCCT
GCACGTGGTCAGCTGAACAGGGGAAAAAAAATGTTTCCCTGTCCGCGTTC
GCGCCTGAGAATTTGGTCTCGCGAGACGGGTTCGGCAGTCCCGTCCCGCG
TCAACCTGCTCATCTCCACACTCAGGCTGAATCTGATGCTTACTTACGGG
ATTTCTATGTTCCTAATCAATAGTATCGATTGCAATATTACTGTACTGTA
CTATACTGTCATTTTTTTTCTTTTTTCTCTTCTCTTTCAAGGAGGAAAAA
GACGTGGAGGCGTTCTCCAGCGTAATCGCGGGTGTCGACATGGGGGACGT
AGAGGGCTACAGCAGCGGGGTGAGAGACTTGTGCGCGTGTGTACCGGTAT
GCTATTTGTTAAAACTCACATAGTCTAACGGTGCAGTCCTGTGTGTCGTA
CCCGGTATTTTTTCTTTAATTTGTACGTAACCGCGCTGAACTTGCATCGC
GATAAAATTTCATAAGGCGTGAACGGGGGAGAGATGACAGGACCCACACA
TTAGTGACCGCAGTATAGGCAGGATGGAATGAGGCCCATCGGCTAAAAGT
ATTCCGCCCTGTCACCCTACTATTATAGCATACAGTACTAATATTATAAA
TATAATAGTACTTGTATTGAGTTTTACTAGTCGTAAGCCTCCCTCCCATC
CCCTCTCCCCCCAACTATGATCCAGCACACACACGGTAGCAGCAGCAGCA
GCAGCAGAGGTAATTGTCATTGCCGCCGATTTGATATCTTCAGTGCATAC
CTCAGAACAGTTTTTGACCACTACTGTCCACTCACTGTCTGTGCACCCCA
TCACCGCCGCGGTGCTTTTGTATCAGCTATGAATATCAATTTCTGTGTAG
ACGCCGTCTTGAGTTATACAGCAAATGCAGCCATTTTTTTCACGTATCTA
TGGTGCATCTCACCCCGTTCGCACCACCTTCCGGCAGAACAACTCCGGCG
ACGACTTCGGCTCCGTACAGGGCCGCGATTCGGGGAGGTTTACGATCACG
CCCGCGTTCCACATGACCGACGAGCAGCAGCAGCAGCAGCAGCAGCTGCA
GCAGCTGTTGACCCTGAAGCTCCCACACCTGAAGCTTCTCGATCCCGAGG
ACAGCTCATCAGAACTCGGTGCTGATGCTGCCGACGATGCTGCCGGTCGC
GCTGTCGGGTCTGTCGCCGAGGCAGTGGGTAATATTAGTAGCAGGAG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig669:290513..299409+

>mRNA_F-serratus_M_contig669.17693.1 ID=mRNA_F-serratus_M_contig669.17693.1|Name=mRNA_F-serratus_M_contig669.17693.1|organism=Fucus serratus male|type=CDS|length=1710bp|location=Sequence derived from alignment at F-serratus_M_contig669:290513..299409+ (Fucus serratus male)
ACCTTGGACGCCCTCTCAAAAGAGACCTTGGACGCCCTCTCAAAAGAGCA
CAAGAACATGGTGGTTGTCAAGAGCCCCCGCAGCCGCGAGACCTTGAGTC
GGCTGCTGGGACACACGAACTGCGTACTGGCCGCTGAACACGGCGCCTTC
ATCCGCTGGGGGAAGCACGCCCGTTGGCAGCACAAGAACATGGTGGTTGT
CAAGAGCCCCCGCAGCCGCGAGACCTTGAGTCGGCTGCTGGGACACACGA
ACTGCGTACTGGCCGCTGAACACGGCGCCTTCATCCGCTGGGGGAAGCAC
GCCCGTTGGCAGTCGCTGCTGCCGAATCCCGACATGAGCTGGACGTCAGA
CATCGAACCGCTGTTGCAGTACTACACGGAACGAACCCCTGGGGCCGTCA
TGGAGTCGCTGCTGCCGAATCCCGACATGAGCTGGACGTCAGACATCGAA
CCGCTGTTGCAGTACTACACGGAACGAACCCCTGGGGCCGTCATGGAGGT
GCGTGAGCTGGGAAGAGCCTGGCACTACAGGGACTGCGATCTCGGACACG
GTGCTTGGCAGGCCAAGCAGCTCCATGTGTCCCTCATCCAGCTGTCCAAG
AGGCTTCCCATCCATGTCTTCGCAGGAGACAAGGTGCGTGAGCTGGGAAG
AGCCTGGCACTACAGGGACTGCGATCTCGGACACGGTGCTTGGCAGGCCA
AGCAGCTCCATGTGTCCCTCATCCAGCTGTCCAAGAGGCTTCCCATCCAT
GTCTTCGCAGGAGACAAGGTGCTGGAAATCATCCCTCAGGCCCTCATGAA
CCAGGTGTCTCGCTTCCTGGAGATTGTCGTGGTGCGGTTCCGGCGGCTGC
TAAGGTTCAAGCCCGTGGAAGACGTCGTTCGTCTTCGCCATGACAGCTTG
GAGGTGCTGGAAATCATCCCTCAGGCCCTCATGAACCAGGTGTCTCGCTT
CCTGGAGATTGTCGTGGTGCGGTTCCGGCGGCTGCTAAGGTTCAAGCCCG
TGGAAGACGTCGTTCGTCTTCGCCATGACAGCTTGGAGGAGGAAAAAGAC
GTGGAGGCGTTCTCCAGCGTAATCGCGGGTGTCGACATGGGGGACGTAGA
GGGCTACAGCAGCGGGGAGGAAAAAGACGTGGAGGCGTTCTCCAGCGTAA
TCGCGGGTGTCGACATGGGGGACGTAGAGGGCTACAGCAGCGGGAACAAC
TCCGGCGACGACTTCGGCTCCGTACAGGGCCGCGATTCGGGGAGGTTTAC
GATCACGCCCGCGTTCCACATGACCGACGAGCAGCAGCAGCAGCAGCAGC
AGCTGCAGCAGCTGTTGACCCTGAAGCTCCCACACCTGAAGCTTCTCGAT
CCCGAGGACAGCTCATCAGAACTCGGTGCTGATGCTGCCGACGATGCTGC
CGGTCGCGCTGTCGGGTCTGTCGCCGAGGCAGTGGGTAATATTAGTAGCA
GGAACAACTCCGGCGACGACTTCGGCTCCGTACAGGGCCGCGATTCGGGG
AGGTTTACGATCACGCCCGCGTTCCACATGACCGACGAGCAGCAGCAGCA
GCAGCAGCAGCTGCAGCAGCTGTTGACCCTGAAGCTCCCACACCTGAAGC
TTCTCGATCCCGAGGACAGCTCATCAGAACTCGGTGCTGATGCTGCCGAC
GATGCTGCCGGTCGCGCTGTCGGGTCTGTCGCCGAGGCAGTGGGTAATAT
TAGTAGCAGG
back to top