mRNA_F-serratus_M_contig669.17686.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig669.17686.1 vs. uniprot
Match: A0A6H5JS96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS96_9PHAE) HSP 1 Score: 246 bits (629), Expect = 4.930e-72 Identity = 125/237 (52.74%), Postives = 170/237 (71.73%), Query Frame = 2
Query: 8 AVLSQGHSLVVQVKEPYTVSTQGCSGDVSPCLADGGLSVSVDGELVDYLAGPSNDVHLP-GGIELSSSNLPPACREFGGRKVWARMQKDMLRGRRQLSAVRTFEDWMLGFAH-MVSPEFCATFVANDDLLKVQSDQALLRIVTPTAVVRLSAGVNHRRAGKTDRFGRDLPELDFWQMGVGVEGLTIDHKSLSGLLGETSRVVVDAEGNEVMGGAEALPGTIEDYRVSDAEAIDFALL 712
AVLS+GHS+V++V+ PYTV T GC VSPCLA+GGL + VD + VD L S V + G + +SSSNLP C++FGG ++WARM +DM+ GRR+L + E+W+L + H M +P +CA ++A +DL +QSD A+ +I TPT VRL+AGVN++ G+ + GR LP+L+FWQMGVG++GL +D+ +LSGLLGET+R V D G VM G +A GTIEDYRVSDA + F LL
Sbjct: 169 AVLSKGHSVVIEVENPYTVVTNGCPEGVSPCLANGGLRIIVDSQQVDELLRFSRHVPVADGAMTVSSSNLPVECQQFGGDRIWARMYQDMIEGRRELHGDESLEEWILKYDHGMAAPGWCAKYIAENDLADLQSDHAIFKIQTPTVTVRLNAGVNYQGNGELNWDGRVLPDLEFWQMGVGMDGLDVDNPALSGLLGETARPVYDENGQVVMEGFDAFRGTIEDYRVSDALDVHFPLL 405
BLAST of mRNA_F-serratus_M_contig669.17686.1 vs. uniprot
Match: D8LMW2_ECTSI (Imm upregulated 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMW2_ECTSI) HSP 1 Score: 230 bits (587), Expect = 4.050e-67 Identity = 114/237 (48.10%), Postives = 168/237 (70.89%), Query Frame = 2
Query: 8 AVLSQGHSLVVQVKEPYTVSTQGCSGDVSPCLADGGLSVSVDGELVDYLAGPSNDVHLPGG-IELSSSNLPPACREFGGRKVWARMQKDMLRGRRQLSAVRTFEDWMLGF-AHMVSPEFCATFVANDDLLKVQSDQALLRIVTPTAVVRLSAGVNHRRAGKTDRFGRDLPELDFWQMGVGVEGLTIDHKSLSGLLGETSRVVVDAEGNEVMGGAEALPGTIEDYRVSDAEAIDFALL 712
A++S+G+S+V++V+ PYT+ T GC VSPCLA+GGL + VDG+ VD L S + + G + +S+SNLP CR+FGG ++WARM +D+L RRQL + E+W+L + +M + +CA ++A +DL +Q++ A+ +I TPT VRL+AGVN++ G+ + GR LP+L+FWQM VG++GL +D+ +LSGLLGET+R V G VM G++A GT+EDYRVS A + FALL
Sbjct: 70 AIMSEGYSVVIEVENPYTIVTGGCPEGVSPCLANGGLRIIVDGQEVDELLRFSRQMPVADGTMTMSASNLPVECRQFGGHRIWARMYQDILEDRRQLRGGESLEEWILRYDQNMPARRWCAKYIAENDLADLQANHAIFKIQTPTVTVRLNAGVNYQGDGELNWDGRVLPDLEFWQMDVGIDGLDVDNPALSGLLGETARPVYGENGEAVMEGSDAFRGTVEDYRVSSALGVHFALL 306
BLAST of mRNA_F-serratus_M_contig669.17686.1 vs. uniprot
Match: A0A6H5JNZ2_9PHAE (VWFA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNZ2_9PHAE) HSP 1 Score: 223 bits (569), Expect = 1.250e-60 Identity = 117/240 (48.75%), Postives = 164/240 (68.33%), Query Frame = 2
Query: 2 GVAVLSQGHSLVVQVKEPYTVS-TQGC-SGDVSPCLADGGLSVSVDGELVDYLAGPSNDVHLPGGIELSSSNLPPACREFGGRKVWARMQKDMLRGRRQLSAVRTFEDWMLGFAHMVSPEFCATFVANDDLLKVQSDQALLRIVTPTAVVRLSAGVNHRRAGKTDRFGRDLPELDFWQMGVGVEGLTIDHKSLSGLLGETSRVVVDAEGNEVMGGAEALPGTIEDYRVSDAEAIDFALLH 715
G++V+S+GHSLV++V PY+ GC G +PCLA+GGLSV+VDGE L P LPGGIE+S+ NLP C +FGG K+WAR + +L RR+L A ++FEDW+L F M + ++C +++ L VQS A+ +IVTP VVRL+ G+ H+ + D GR LP+LD WQM VG+ GL++++++L+G+LGET+R V D +G+ VM G +A GT EDYRVS +DFALLH
Sbjct: 457 GLSVISEGHSLVLEVTNPYSTDLNDGCPDGSPTPCLANGGLSVTVDGEKNVGLIHPIRGEILPGGIEVSADNLPVQCWQFGGHKIWARHYEAIL-ARRKLRA-QSFEDWVLSFTDMAAHDWCTEYISEKGLTGVQSSHAIYQIVTPAVVVRLNVGIGHQDGDEVDWDGRVLPDLDVWQMDVGLTGLSLENEALTGILGETARPVYDEDGHAVMAGDDAYRGTPEDYRVSGPLGMDFALLH 694
BLAST of mRNA_F-serratus_M_contig669.17686.1 vs. uniprot
Match: A0A6H5JP35_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP35_9PHAE) HSP 1 Score: 211 bits (537), Expect = 2.480e-59 Identity = 114/243 (46.91%), Postives = 163/243 (67.08%), Query Frame = 2
Query: 2 GVAVLSQGHSLVVQVKEPYTVSTQG-C-SGDVSPCLADGGLSVSVDGELV---DYLAGPSNDVHLPGGIELSSSNLPPACREFGGRKVWARMQKD-MLRGRRQLSAVRTFEDWMLGFAHMVSPEFCATFVANDDLLKVQSDQALLRIVTPTAVVRLSAGVNHRRAGKTDRFGRDLPELDFWQMGVGVEGLTIDHKSLSGLLGETSRVVVDAEGNEVMGGAEALPGTIEDYRVSDAEAIDFALL 712
G++V++ GHSLV++V +PY T G C G +PCLA+GGLSV VDGE L D LPGGI++S++NLP C +FGG K+ AR + ++ GRR L + TFE+W+L F HM + ++C ++A+ DL VQS QA+ +I+TP VVR + G+ H+ G + GR +P+LD W+M VG+ GL++++++L+G+LGET+R V+D G VM G +A GT EDYRVS A DFALL
Sbjct: 108 GLSVMAGGHSLVIEVTKPYDTDTAGGCPDGAPAPCLANGGLSVIVDGEKEADDSPLLHTIRDETLPGGIQVSAANLPVQCWQFGGDKISARHYANTIMEGRRHLLS-ETFEEWVLSFQHMAAHDWCTEYIAHKDLSDVQSAQAIYQIITPEVVVRFNVGIGHQTGGHVEMDGRIVPDLDVWEMDVGLAGLSLENETLTGILGETARPVLDEHGRAVMKGNKAYRGTPEDYRVSGALGTDFALL 349
BLAST of mRNA_F-serratus_M_contig669.17686.1 vs. uniprot
Match: A0A6H5JP37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP37_9PHAE) HSP 1 Score: 200 bits (508), Expect = 8.930e-56 Identity = 106/236 (44.92%), Postives = 151/236 (63.98%), Query Frame = 2
Query: 8 AVLSQGHSLVVQVKEPYTVSTQGCSGDVSPCLADGGLSVSVDGELVDYLAGPSNDVHLPGGIELSSSNLPPACREFGGRKVWARMQKDMLRGRRQLSAVRTFEDWMLGF-AHMVSPEFCATFVANDDLLKVQSDQALLRIVTPTAVVRLSAGVNHRRAGKTDRFGRDLPELDFWQMGVGVEGLTIDHKSLSGLLGETSRVVVDAEGNEVMGGAEALPGTIEDYRVSDAEAIDFALL 712
A++S+G+S+V++VK PYT T GC DVSPC A+GGL + VDG VD L L S P GG+++WARM +D+L GRRQL + E+W+L + +M + +CA ++A +DL +Q++ A+ +I TPT VRL+AGVN++ G+ + GR LP+L+FWQ+ VG++GL +D +LSGL GET+ V D G VM G +A G +EDYRVS A + FALL
Sbjct: 75 AIMSEGYSVVIEVKNPYTTDTGGCPEDVSPCHANGGLRIIVDGHEVDEL--------------LRFSRQMP-----GGKRIWARMYQDILEGRRQLRGGESLEEWILRYDQNMPARTWCAKYIAENDLADLQANHAIFKIQTPTVTVRLNAGVNYQSNGELNWDGRVLPDLEFWQIDVGIDGLDVDKPALSGLFGETACPVYDENGKAVMEGYDAFRGAVEDYRVSSALGVHFALL 291
BLAST of mRNA_F-serratus_M_contig669.17686.1 vs. uniprot
Match: A0A6H5KYD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYD0_9PHAE) HSP 1 Score: 167 bits (423), Expect = 2.230e-43 Identity = 101/246 (41.06%), Postives = 141/246 (57.32%), Query Frame = 2
Query: 2 GVAVLS-QGHSLVVQVKEPYTVSTQGCSGDVSPCLADGGLSVSVDGELVDYLAGPSNDVHLPGG-IELSSSNLPPACREFGGRKVWARMQKDM--LRGRRQLSAVRTFEDWMLGFAHMVSPEFCATFVAND---DLLKVQSDQALLRIVTPTAVVRLSAGVNHRRAG-KTDRFGRDLPELDFWQMGVGVEGLTIDHKSLSGLLGETSRVVVDAEGNEVMGGAEALPGTIEDYRVSDAEAIDFALLH 715
GV++ S +G SLVV+VK P T T+GCS +PCLA+G L + VDG+ L P ++ LPGG + +SS+NLP CR FGG ++WA M GRR L F DW+L M +P +CA F L VQS++A+LR+ T VR+ GVN++ + +D +PELDFWQ + E L + L G+LG+T+R V+D +G + G EAL G +E RVS +DF +H
Sbjct: 61 GVSIRSAEGPSLVVEVKNPITTETEGCSSTSAPCLAEGALRILVDGDESHALQSPVENLVLPGGDLVVSSANLPAECRPFGGDRIWAAQFAAMNDASGRRSLRGHTPFADWVLEADTMAAPGWCALFAREQRLSGLSSVQSNRAILRVETGGVTVRVDVGVNYQDSVLSSDGNAVLVPELDFWQTDIAFEELRPSGE-LGGMLGDTARYVIDDDGKPITSGMEALRGPVETCRVSGPLGVDFEQMH 305
BLAST of mRNA_F-serratus_M_contig669.17686.1 vs. uniprot
Match: A0A6H5K7V7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7V7_9PHAE) HSP 1 Score: 120 bits (300), Expect = 1.780e-25 Identity = 79/229 (34.50%), Postives = 123/229 (53.71%), Query Frame = 2
Query: 26 HSLVVQVKEPYTVSTQGCSGDVSPCLADGGLSVSVDGELVDYLAGPSNDVHLPGGIELSSSNLPPACREFGGRKVWARMQKDMLRGRRQLS---AVRTFEDWMLGFAHMVSPEFCATFV------ANDDLLKVQSDQALLRIVTPTAVVRLSAGVNHRRAGK--TDRFGRDLPELDFWQMGVGVEGLTIDHKSLSGLLGETSRVVVDAEGNEVMGGAEALPGTIEDYRV 679
HSLV+ V +P+++ + C S CLADG L+V +DG++ L P + L G+ +S+ NLP ACR FG K W R + + + R+L+ ++ DW+LG + C +V L + S+ +IVTP +RLS G H+ A + TDRF D+P+ WQM + + + + + +G+LGET + +DA GN +M G A+ G+ EDY V
Sbjct: 204 HSLVITVTDPHSLDSA-CPVQGSTCLADGALTVELDGDVA--LLSPG-EAELGPGVAISAVNLPGACRSFGFEKYWERKKAEYVASGRRLNNDLQMQEMSDWILGDPTATNMAECTEYVLGATVDGQAGLFEYDSEHTSFQIVTPKGTIRLSHGRLHQLAMRDPTDRF--DIPDHLTWQMNLAFDNVDLAVDA-TGILGETQQHTLDANGNPIMEGMAAIRGSQEDYLV 425
BLAST of mRNA_F-serratus_M_contig669.17686.1 vs. uniprot
Match: A0A6H5KRS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS2_9PHAE) HSP 1 Score: 114 bits (284), Expect = 1.160e-23 Identity = 82/241 (34.02%), Postives = 131/241 (54.36%), Query Frame = 2
Query: 2 GVAVLSQG-----HSLVVQVKEPYTVSTQGCSGDVSPCLADGGLSVSVDGELVDYLAGPSNDVHLPGGIELSSSNLPPACREFGGRKVWARMQKDMLR--GRRQLSAVRTFEDWMLGFAHMVSPEFCATFVA-------NDDLLKVQSDQALLRIVTPTAVVRLSAGVNHRRAGKTDRFGRDLPELDFWQMGVGVEGLTIDHKSLSGLLGETSRVVVDAEGNEVMGGAEALPGTIEDYRVS 682
G+++++Q HS+V+ VK+P+++ + C V+PCLA+G LSVS+DG+ + L+ P V + +++S NLP ACR FG K W R + + + GRR S + DW+LG + C +VA + L +S+ A +IV P A VRLS G H+ A ++G LP+ WQM + ++ ++ G+LGET DA+G VM G E++ GT E+ ++
Sbjct: 108 GISLITQDGNGLDHSVVITVKDPHSLESS-CPAGVTPCLANGALSVSLDGK--EALSAPGV-VEMAPNMKVSVVNLPGACRSFGFEKYWERKKLEYAQAGGRRLSSKDQDMGDWILGDPTATNMAECTEYVARHVVEGGDGGLFAHKSEHASFQIVMPIATVRLSHGRLHQIA----QYG--LPDHSTWQMNLAIDSDSVG-VGAQGVLGETLVPTRDADGEYVMHGMESIRGTQEECELA 337
BLAST of mRNA_F-serratus_M_contig669.17686.1 vs. uniprot
Match: A0A6H5L2W0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W0_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 4.170e-15 Identity = 60/224 (26.79%), Postives = 107/224 (47.77%), Query Frame = 2
Query: 26 HSLVVQVKEPYTVSTQGCSGDVSPCLADGGLSVSVDGELVDYLAGPSNDVHLPGGIELSSSNLPPACREFGGRKVWARMQKDMLRGRRQLSA---VRTFEDWMLGFAHMVSPEFCATFVAN------DDLLKVQSDQALLRIVTPTAVVRLSAGVNHRRAGKTDRFGRDLPELDFWQMGVGVEGLTIDHKSLSGLLGETSRVVVDAEGNEVMGGAEALPGTIED 670
H++V+ V +P+++ + C VSPCLADG L+V +DG+ L P + P + +S+ NLP ACR FG + W R +++ RG R+L + ++ DW+LG + C +V L + + +I+TP +R + F M + ++ + + + +G+LGET + +DA G+ +M G ++ G +D
Sbjct: 62 HTIVITVTDPHSLDSA-CPVGVSPCLADGALTVQLDGK--HALLAPGEVLFGPQ-VAISAVNLPGACRSFGFEEYWERKKQEYARGGRRLPSSTQMQAMSDWILGDPTATNMAECTEYVVEATRNGLGGLFEHDLEHTSFQILTPMGTIRRAMAAF----------------TSFPCMNLAIDRIDVSPNA-TGILGETQKPTLDANGSPIMQGMASIRGAQDD 264 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig669.17686.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig669.17686.1 >prot_F-serratus_M_contig669.17686.1 ID=prot_F-serratus_M_contig669.17686.1|Name=mRNA_F-serratus_M_contig669.17686.1|organism=Fucus serratus male|type=polypeptide|length=154bp MQKDMLRGRRQLSAVRTFEDWMLGFAHMVSPEFCATFVANDDLLKVQSDQback to top mRNA from alignment at F-serratus_M_contig669:113364..115176+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig669.17686.1 ID=mRNA_F-serratus_M_contig669.17686.1|Name=mRNA_F-serratus_M_contig669.17686.1|organism=Fucus serratus male|type=mRNA|length=1813bp|location=Sequence derived from alignment at F-serratus_M_contig669:113364..115176+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig669:113364..115176+ >mRNA_F-serratus_M_contig669.17686.1 ID=mRNA_F-serratus_M_contig669.17686.1|Name=mRNA_F-serratus_M_contig669.17686.1|organism=Fucus serratus male|type=CDS|length=924bp|location=Sequence derived from alignment at F-serratus_M_contig669:113364..115176+ (Fucus serratus male)back to top |