mRNA_F-serratus_M_contig6680.17678.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6680.17678.1
Unique NamemRNA_F-serratus_M_contig6680.17678.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6680.17678.1 vs. uniprot
Match: A0A6H5KVV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV7_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 7.700e-17
Identity = 66/154 (42.86%), Postives = 85/154 (55.19%), Query Frame = -2 
Query:    6 YRVAARNLRKSQGVNSMTAPMLEKLMTLLQLEPRRLVVQGLAPRRLLLGASPAPLPAMEDSPDVEENERYEERGMFGDDIENDTSEAEQVEAVEREKEDTSGDGNDDTLENDDNMQEEPKSKPESRRPIHAALVTGGIKLRPRETKALLRALDV 467
            Y+  ARNLR+  GV SMTA  LEK M LL+L P RLVVQGLAP +LL G S A   A          +  +  G  G ++E + ++  QV          SGD   D +   +++  E   +  S+ P+HAALV  GI LRPRET+ LLRAL V
Sbjct:   27 YKATARNLREYHGVPSMTADNLEKTMVLLRLRPGRLVVQGLAPEKLLKGFSAADAHA----------DTTDSSGSSGSEVEPEQADDNQVSDDXXXXXXXSGDTEHDNIRKHNSLGFETNKR--SKHPVHAALVAAGITLRPRETRPLLRALGV 168
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BLAST of mRNA_F-serratus_M_contig6680.17678.1 vs. uniprot
Match: D8LN68_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN68_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.010e-10
Identity = 66/164 (40.24%), Postives = 86/164 (52.44%), Query Frame = -2 
Query:    6 YRVAARNLRKSQGVNSMTAPMLEKLMTLLQLEPRRLVVQGLAPRRLLLG----------ASPAPLPAMEDSPDVEENERYEERGMFGDDIENDTSEAEQVEAVEREKEDTSGDGNDDTLENDDNMQEEPKSKPESRRPIHAALVTGGIKLRPRETKALLRALDV 467
            Y++AARNLR+  GV SMT   L K +  L+L P+RLV QGLAP+ LL             S  PL   +++ D+ E+      GM    +E+D  E      V  E  DTS  GND+  +ND    E  K+       IH A + GGI+LRPRE + LL ALDV
Sbjct:  108 YKIAARNLREYNGVPSMTPLKLVKTLAFLELNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGKNNEDLAESVAA---GMELMSVEDDKKEWNDG-FVSVEPADTSSPGNDNEEKNDAVAPEVKKNL------IHKAFIAGGIQLRPREVRPLLVALDV 261
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6680.17678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KVV7_9PHAE7.700e-1742.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN68_ECTSI1.010e-1040.24PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6680contigF-serratus_M_contig6680:17156..17623 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size469
Cds size468
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932046.914756-CDS-F-serratus_M_contig6680:17155..176231622932046.914756-CDS-F-serratus_M_contig6680:17155..17623Fucus serratus maleCDSF-serratus_M_contig6680 17156..17623 +
1690964118.892439-CDS-F-serratus_M_contig6680:17155..176231690964118.892439-CDS-F-serratus_M_contig6680:17155..17623Fucus serratus maleCDSF-serratus_M_contig6680 17156..17623 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6680.17678.1prot_F-serratus_M_contig6680.17678.1Fucus serratus malepolypeptideF-serratus_M_contig6680 17156..17623 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6680.17678.1

>prot_F-serratus_M_contig6680.17678.1 ID=prot_F-serratus_M_contig6680.17678.1|Name=mRNA_F-serratus_M_contig6680.17678.1|organism=Fucus serratus male|type=polypeptide|length=156bp
GITSRARSRALVSRGRSLMPPVTRAAWMGRRDSGFDFGSSCILSSFSRVS
SLPSPEVSSFSRSTASTCSASDVSFSMSSPNIPLSSYLSFSSTSGLSSIA
GSGAGDAPRSSLRGARPCTTSRRGSSCRSVMSFSSMGAVMEFTPWDLRKL
RAATL*
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mRNA from alignment at F-serratus_M_contig6680:17156..17623+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6680.17678.1 ID=mRNA_F-serratus_M_contig6680.17678.1|Name=mRNA_F-serratus_M_contig6680.17678.1|organism=Fucus serratus male|type=mRNA|length=468bp|location=Sequence derived from alignment at F-serratus_M_contig6680:17156..17623+ (Fucus serratus male)
GGGATCACATCGAGAGCGCGAAGCAGGGCCTTGGTCTCGCGGGGACGCAG
TTTGATGCCGCCGGTCACCAGAGCCGCGTGGATGGGGCGCCGCGACTCCG
GCTTCGACTTCGGTTCCTCCTGCATATTGTCGTCATTTTCGAGGGTGTCA
TCATTGCCGTCTCCCGAGGTGTCCTCCTTTTCTCGCTCAACTGCCTCCAC
CTGCTCCGCTTCCGACGTGTCGTTTTCGATGTCGTCTCCAAACATCCCTC
TCTCCTCGTATCTCTCATTTTCTTCTACATCAGGGCTGTCTTCCATCGCG
GGCAGTGGTGCAGGCGATGCTCCCAGAAGCAGCCTTCGAGGAGCTAGACC
CTGCACGACCAGTCGCCGAGGCTCCAGCTGCAGGAGTGTCATGAGCTTCT
CAAGCATGGGCGCCGTCATGGAGTTCACCCCTTGGGACTTGCGCAAGTTG
CGTGCGGCTACCCTGTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig6680:17156..17623+

>mRNA_F-serratus_M_contig6680.17678.1 ID=mRNA_F-serratus_M_contig6680.17678.1|Name=mRNA_F-serratus_M_contig6680.17678.1|organism=Fucus serratus male|type=CDS|length=936bp|location=Sequence derived from alignment at F-serratus_M_contig6680:17156..17623+ (Fucus serratus male)
GGGATCACATCGAGAGCGCGAAGCAGGGCCTTGGTCTCGCGGGGACGCAG
TTTGATGCCGCCGGTCACCAGAGCCGCGTGGATGGGGCGCCGCGACTCCG
GCTTCGACTTCGGTTCCTCCTGCATATTGTCGTCATTTTCGAGGGTGTCA
TCATTGCCGTCTCCCGAGGTGTCCTCCTTTTCTCGCTCAACTGCCTCCAC
CTGCTCCGCTTCCGACGTGTCGTTTTCGATGTCGTCTCCAAACATCCCTC
TCTCCTCGTATCTCTCATTTTCTTCTACATCAGGGCTGTCTTCCATCGCG
GGCAGTGGTGCAGGCGATGCTCCCAGAAGCAGCCTTCGAGGAGCTAGACC
CTGCACGACCAGTCGCCGAGGCTCCAGCTGCAGGAGTGTCATGAGCTTCT
CAAGCATGGGCGCCGTCATGGAGTTCACCCCTTGGGACTTGCGCAAGTTG
CGTGCGGCTACCCTGTAGGGGATCACATCGAGAGCGCGAAGCAGGGCCTT
GGTCTCGCGGGGACGCAGTTTGATGCCGCCGGTCACCAGAGCCGCGTGGA
TGGGGCGCCGCGACTCCGGCTTCGACTTCGGTTCCTCCTGCATATTGTCG
TCATTTTCGAGGGTGTCATCATTGCCGTCTCCCGAGGTGTCCTCCTTTTC
TCGCTCAACTGCCTCCACCTGCTCCGCTTCCGACGTGTCGTTTTCGATGT
CGTCTCCAAACATCCCTCTCTCCTCGTATCTCTCATTTTCTTCTACATCA
GGGCTGTCTTCCATCGCGGGCAGTGGTGCAGGCGATGCTCCCAGAAGCAG
CCTTCGAGGAGCTAGACCCTGCACGACCAGTCGCCGAGGCTCCAGCTGCA
GGAGTGTCATGAGCTTCTCAAGCATGGGCGCCGTCATGGAGTTCACCCCT
TGGGACTTGCGCAAGTTGCGTGCGGCTACCCTGTAG
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