mRNA_F-serratus_M_contig6665.17665.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6665.17665.1
Unique NamemRNA_F-serratus_M_contig6665.17665.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6665.17665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6665contigF-serratus_M_contig6665:17631..18356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size248
Cds size246
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932044.119092-CDS-F-serratus_M_contig6665:17630..177691622932044.119092-CDS-F-serratus_M_contig6665:17630..17769Fucus serratus maleCDSF-serratus_M_contig6665 17631..17769 +
1690964117.6673937-CDS-F-serratus_M_contig6665:17630..177691690964117.6673937-CDS-F-serratus_M_contig6665:17630..17769Fucus serratus maleCDSF-serratus_M_contig6665 17631..17769 +
1622932044.1328013-CDS-F-serratus_M_contig6665:18249..183561622932044.1328013-CDS-F-serratus_M_contig6665:18249..18356Fucus serratus maleCDSF-serratus_M_contig6665 18250..18356 +
1690964117.6795888-CDS-F-serratus_M_contig6665:18249..183561690964117.6795888-CDS-F-serratus_M_contig6665:18249..18356Fucus serratus maleCDSF-serratus_M_contig6665 18250..18356 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6665.17665.1prot_F-serratus_M_contig6665.17665.1Fucus serratus malepolypeptideF-serratus_M_contig6665 17631..18356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6665.17665.1

>prot_F-serratus_M_contig6665.17665.1 ID=prot_F-serratus_M_contig6665.17665.1|Name=mRNA_F-serratus_M_contig6665.17665.1|organism=Fucus serratus male|type=polypeptide|length=82bp
MLQVLRKKETGCGGIFWGHRKKAEEGQTTTAPKHIFPADALVVTGTVCAS
AFITIRSGRIRRRFEVVVIDVVMGVWSESYGA
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mRNA from alignment at F-serratus_M_contig6665:17631..18356+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6665.17665.1 ID=mRNA_F-serratus_M_contig6665.17665.1|Name=mRNA_F-serratus_M_contig6665.17665.1|organism=Fucus serratus male|type=mRNA|length=726bp|location=Sequence derived from alignment at F-serratus_M_contig6665:17631..18356+ (Fucus serratus male)
ATGCTGCAGGTCCTGCGTAAGAAGGAGACTGGTTGTGGTGGTATTTTCTG
GGGCCACAGAAAAAAAGCGGAAGAAGGGCAAACCACCACAGCACCAAAAC
ATATTTTTCCCGCAGACGCACTAGTGGTCACTGGGACAGGTATCCGGACG
ACAGCAGTTGGCAATAGCGTTTATGTCTCGCAGAATCAATCTTACTGTTG
AGTAGAGAGAAAATGTATGATGGTTTCATGCCCTCACTACGGCATACCGG
TACGGTACAACAGAGTGTTAATACTCATTTAGAAAAGATGGCCCGTGCTC
TCTCCGCAGCTGTTACTCTTGCGGCATCGACGCCGGGTATAGCCTGATTT
TTGTCTTTGTCTAGAAAATAAAAGGGGGTTGGAGGGGGGGGCTATTTTCC
AACCCTCCGAGACATCATGTTACACTTGATATATCGTAACCTGCGATAAT
GCGGCGTGTAAGTGTTTAATTTGTGAAAGTTGTACCCAAAAGAGGGAATA
GCACTTTCGCTGTTTCCCATGCCTTCGCAAATCATACCTGGTATATAACA
AATGTTGCCGGGCGCCCCTCCAACCCTTGTCCCTTCTATGCGCGTCCTCT
CGCCATGTCCCTGCTTCATTATGTGCATCTGCATTCATAACGATCAGGAG
CGGGCGCATCCGGAGACGCTTTGAGGTGGTGGTCATAGATGTAGTGATGG
GCGTTTGGAGTGAAAGTTATGGTGCT
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Coding sequence (CDS) from alignment at F-serratus_M_contig6665:17631..18356+

>mRNA_F-serratus_M_contig6665.17665.1 ID=mRNA_F-serratus_M_contig6665.17665.1|Name=mRNA_F-serratus_M_contig6665.17665.1|organism=Fucus serratus male|type=CDS|length=492bp|location=Sequence derived from alignment at F-serratus_M_contig6665:17631..18356+ (Fucus serratus male)
ATGCTGCAGGTCCTGCGTAAGAAGGAGACTGGTTGTGGTGGTATTTTCTG
GGGCCACAGAAAAAAAGCGGAAGAAGGGCAAACCACCACAGCACCAAAAC
ATATTTTTCCCGCAGACGCACTAGTGGTCACTGGGACAGATGCTGCAGGT
CCTGCGTAAGAAGGAGACTGGTTGTGGTGGTATTTTCTGGGGCCACAGAA
AAAAAGCGGAAGAAGGGCAAACCACCACAGCACCAAAACATATTTTTCCC
GCAGACGCACTAGTGGTCACTGGGACAGTATGTGCATCTGCATTCATAAC
GATCAGGAGCGGGCGCATCCGGAGACGCTTTGAGGTGGTGGTCATAGATG
TAGTGATGGGCGTTTGGAGTGAAAGTTATGGTGCTTATGTGCATCTGCAT
TCATAACGATCAGGAGCGGGCGCATCCGGAGACGCTTTGAGGTGGTGGTC
ATAGATGTAGTGATGGGCGTTTGGAGTGAAAGTTATGGTGCT
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