mRNA_F-serratus_M_contig664.17649.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig664.17649.1
Unique NamemRNA_F-serratus_M_contig664.17649.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig664.17649.1 vs. uniprot
Match: A0A6H5JS47_9PHAE (Btz domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS47_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 2.640e-15
Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = 1 
Query:    1 DDEPWGHEGYEEVLRAEEEGRPISNSSTFWSNPTGKTGKDRAGAWKRG 144
            DD PWGHEGYEEVLRAEEEGRPI++SS FWSNPTGK G  R+GAW+ G
Sbjct:  279 DDLPWGHEGYEEVLRAEEEGRPIASSSGFWSNPTGKDG--RSGAWRGG 324
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig664.17649.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JS47_9PHAE2.640e-1579.17Btz domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig664contigF-serratus_M_contig664:297432..298243 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932041.7194207-CDS-F-serratus_M_contig664:297431..2977161622932041.7194207-CDS-F-serratus_M_contig664:297431..297716Fucus serratus maleCDSF-serratus_M_contig664 297432..297716 -
1690964116.7368348-CDS-F-serratus_M_contig664:297431..2977161690964116.7368348-CDS-F-serratus_M_contig664:297431..297716Fucus serratus maleCDSF-serratus_M_contig664 297432..297716 -
1622932041.7383986-CDS-F-serratus_M_contig664:298210..2982431622932041.7383986-CDS-F-serratus_M_contig664:298210..298243Fucus serratus maleCDSF-serratus_M_contig664 298211..298243 -
1690964116.7482545-CDS-F-serratus_M_contig664:298210..2982431690964116.7482545-CDS-F-serratus_M_contig664:298210..298243Fucus serratus maleCDSF-serratus_M_contig664 298211..298243 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig664.17649.1prot_F-serratus_M_contig664.17649.1Fucus serratus malepolypeptideF-serratus_M_contig664 297432..298243 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig664.17649.1

>prot_F-serratus_M_contig664.17649.1 ID=prot_F-serratus_M_contig664.17649.1|Name=mRNA_F-serratus_M_contig664.17649.1|organism=Fucus serratus male|type=polypeptide|length=106bp
DDEPWGHEGYEEVLRAEEEGRPISNSSTFWSNPTGKTGKDRAGAWKRGGS
GRRGGGGGSGVWGAERESFQDDLASAGNQNGSWSRSQRDGFEGTGRERGR
GRGRGG
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mRNA from alignment at F-serratus_M_contig664:297432..298243-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig664.17649.1 ID=mRNA_F-serratus_M_contig664.17649.1|Name=mRNA_F-serratus_M_contig664.17649.1|organism=Fucus serratus male|type=mRNA|length=812bp|location=Sequence derived from alignment at F-serratus_M_contig664:297432..298243- (Fucus serratus male)
GACGACGAGCCCTGGGGGCACGAAGGATACGAGGTGTGTTTCCTCCTTTC
TTTATTCCTGTCTTACGACGACTGACGGGGGACTAATAGAGACGCGGGCC
ATGGAGGGGAGGACAAGAGAGAGAGGAAGAGGGGGTGGTGAGGATATGAC
ATGATATAGTATAGTCAGGGCAAAATCACCTGCTAGAGTACACATTTGTA
CGCACACATTATACGTAGTATATCAGTGACAACAGTCAATCAAAGTACCC
TGGTGTTTTATGAAAGTGCTCTTTTCAAAGCATGGACTACACGGTTCGTT
AAAGCACCTGGTACATAGAATCGTTCACTTTCCTAGGCACACAATGGCAT
CTCTGCTCTCTTGAGCGTACCTCGGAACTGTCTGCAGTGTTGTTCCCCCC
TTCTTCTCAGTTGTCCCTTTTCCGCAGCCACGATCAAAATCTAAAAAAAC
GGCTGATTCTGCCGGCACCGGACGATTTCCTTCGCCACTTGAGCCCACCT
TTCCCGCTCTATTTTTTTTTCTATCAGGAAGTGCTGCGGGCGGAGGAAGA
GGGTCGACCCATCTCCAACTCATCCACCTTTTGGTCCAACCCTACCGGCA
AGACTGGTAAGGATCGAGCCGGTGCCTGGAAACGTGGAGGCAGCGGAAGA
CGTGGTGGTGGTGGTGGTAGCGGTGTGTGGGGCGCCGAACGGGAGTCTTT
CCAAGACGATCTCGCCAGCGCAGGCAACCAGAACGGAAGCTGGAGCAGGA
GCCAGAGGGACGGTTTCGAGGGAACTGGGAGAGAACGAGGCCGTGGGCGA
GGCAGAGGCGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig664:297432..298243-

>mRNA_F-serratus_M_contig664.17649.1 ID=mRNA_F-serratus_M_contig664.17649.1|Name=mRNA_F-serratus_M_contig664.17649.1|organism=Fucus serratus male|type=CDS|length=636bp|location=Sequence derived from alignment at F-serratus_M_contig664:297432..298243- (Fucus serratus male)
GACGACGAGCCCTGGGGGCACGAAGGATACGAGGACGACGAGCCCTGGGG
GCACGAAGGATACGAGGAAGTGCTGCGGGCGGAGGAAGAGGGTCGACCCA
TCTCCAACTCATCCACCTTTTGGTCCAACCCTACCGGCAAGACTGGTAAG
GATCGAGCCGGTGCCTGGAAACGTGGAGGCAGCGGAAGACGTGGTGGTGG
TGGTGGTAGCGGTGTGTGGGGCGCCGAACGGGAGTCTTTCCAAGACGATC
TCGCCAGCGCAGGCAACCAGAACGGAAGCTGGAGCAGGAGCCAGAGGGAC
GGTTTCGAGGGAACTGGGAGAGAACGAGGCCGTGGGCGAGGCAGAGGCGG
GGAAGTGCTGCGGGCGGAGGAAGAGGGTCGACCCATCTCCAACTCATCCA
CCTTTTGGTCCAACCCTACCGGCAAGACTGGTAAGGATCGAGCCGGTGCC
TGGAAACGTGGAGGCAGCGGAAGACGTGGTGGTGGTGGTGGTAGCGGTGT
GTGGGGCGCCGAACGGGAGTCTTTCCAAGACGATCTCGCCAGCGCAGGCA
ACCAGAACGGAAGCTGGAGCAGGAGCCAGAGGGACGGTTTCGAGGGAACT
GGGAGAGAACGAGGCCGTGGGCGAGGCAGAGGCGGG
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