mRNA_F-serratus_M_contig6609.17594.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6609.17594.1
Unique NamemRNA_F-serratus_M_contig6609.17594.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6609.17594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6609contigF-serratus_M_contig6609:11324..18668 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size297
Cds size273
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6609.17594.1prot_F-serratus_M_contig6609.17594.1Fucus serratus malepolypeptideF-serratus_M_contig6609 11346..18668 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932028.3936539-UTR-F-serratus_M_contig6609:11323..113451622932028.3936539-UTR-F-serratus_M_contig6609:11323..11345Fucus serratus maleUTRF-serratus_M_contig6609 11324..11345 +
1690964110.0251555-UTR-F-serratus_M_contig6609:11323..113451690964110.0251555-UTR-F-serratus_M_contig6609:11323..11345Fucus serratus maleUTRF-serratus_M_contig6609 11324..11345 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932028.4139092-CDS-F-serratus_M_contig6609:11345..114341622932028.4139092-CDS-F-serratus_M_contig6609:11345..11434Fucus serratus maleCDSF-serratus_M_contig6609 11346..11434 +
1690964110.0363085-CDS-F-serratus_M_contig6609:11345..114341690964110.0363085-CDS-F-serratus_M_contig6609:11345..11434Fucus serratus maleCDSF-serratus_M_contig6609 11346..11434 +
1622932028.4292457-CDS-F-serratus_M_contig6609:18484..186681622932028.4292457-CDS-F-serratus_M_contig6609:18484..18668Fucus serratus maleCDSF-serratus_M_contig6609 18485..18668 +
1690964110.0473027-CDS-F-serratus_M_contig6609:18484..186681690964110.0473027-CDS-F-serratus_M_contig6609:18484..18668Fucus serratus maleCDSF-serratus_M_contig6609 18485..18668 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6609.17594.1

>prot_F-serratus_M_contig6609.17594.1 ID=prot_F-serratus_M_contig6609.17594.1|Name=mRNA_F-serratus_M_contig6609.17594.1|organism=Fucus serratus male|type=polypeptide|length=91bp
MLARTQENESPRCSCSIEELTSRTLSRLERSASSGGDPDGGIVIEYGLGL
LALAKSDKDAVFRAVVTSMGSSPNTKEQVRRALCRWAASNR
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mRNA from alignment at F-serratus_M_contig6609:11324..18668+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6609.17594.1 ID=mRNA_F-serratus_M_contig6609.17594.1|Name=mRNA_F-serratus_M_contig6609.17594.1|organism=Fucus serratus male|type=mRNA|length=7345bp|location=Sequence derived from alignment at F-serratus_M_contig6609:11324..18668+ (Fucus serratus male)
TCAACAGCGAACTCATTGCAGAATGTTGGCGCGGACACAGGAAAACGAAT
CGCCCCGATGCTCTTGCAGCATCGAGGAATTGACAAGCAGGACCCTGTCG
AGACTTGAAAGGTGAGACTCCAGATCTCGCGTGAGATTAGAGCGCGCTCC
AGTATTCAGATGAACCCATCCTGGTTGGGAGAAAACTTTAGCCGTTGAAC
TAATTGCTCACCACAGTAGTACTGGAGAAATCTGACCTCTGACCTCAAAC
CAAATGTGTGACCAAATCTCACACAAAAGCCTCGTTCGGTGCAGTGCTTT
CCGCTAGCAAGTAGACGTGCCTTTCTCTCGCTACGCTGACAGCTAACTAG
CTCTGCTGCTTTCAACCCAGAGAAGAGGAATCAAAAACAAATGTTGGCCA
TGAGAATGCTACCTTCGACCAAAGACACCCAAAATGGCGGGAATTGCGAA
ACAAAGTCGATAGGGCAGCCCGCTGACCCGATGTTGTTGTTCTGTATATC
GGATACAACAGCTACCAGTATATACTATATACTATATAATACCTGGTACG
AGTTTTTCAGATGAACCCATCCTGGTTGGGAGAAAACTTTAGCCGTTGAA
CTAATTGCTCACCTCAGTAGTGCTGGAGAAATCTGACCTCTGATCTCAAA
CCAAATGTGTGACCAAATCTCACACCAAAGCCTCGTTCGGTGCAGTGCTT
TCCGCTAGCAAGTAGACGTGCCTATCTCTCGCTACGCTGACAGCTAACTA
GCTCTGCTTTCAACCCAGAGAAGAGGAATCAAAAACAAATGTTGGCCATG
AGAATGCTACCTTCGACCAAAGACACCCAAAATGGCGGGAATTGCGAAAA
AAAGTCGATAGGGCAGCCCGCTGACCCGATGTTGTTCTGTATATCGGATA
CAACAGCTATATACTATATACTATATAATACCTGGTACGAGTTTTTCAGA
TGAACCTATCCTGGTTGGGAGAAAACTCTAGCCGTTGAACTAATTGCTCA
CCTCAGTAGTGCTGGAGAAATCTGACCTCTGATCTCAAACCAAATGTGTG
ACCAAATCTCACACCAAAGCCTCGTTCGGTGCAGTGATATCCGCTAGCAA
GTAGACGTGCCTATCTCTCTCTACGTTGACAGCTAACTAGCTCTGCTTTC
AACCCAGAGAAGAGGAATCAAAAACAAGTGCTGAATGCTACCTTCGACCA
TGGACACCCAAAAGGGCCGGAATTGCGAAATAAAGTCGATAGGGCAGCCC
GCTGACCCGATGTTGTTGTTCTGTATATCGGATACAACAGCTATATACTA
TATACTATATAATACCTGGTACGAGTTTTTCAGATGAACCGATCCTGGTT
GGGAGAACACTTTAGCCGTTGAACTAATTGCTCATCTCAGTAGTGCTGGA
GAAATCTGACCTCTGACCTCAAACCAAATGTGTGACCAAATCTCACACAA
AAGCCTCGTCCGGTGCAGCGCTTTCCGTTAGCAAGTAGACGTGCGTATCT
CTCTCTACGCTGACAGCTAACTAGCTCTGCTTTCAACCCAGAGAAGAGGA
ATCAAAAACAAATGCTGGCCATGAGAATGCTACCTTCGACCATAGACACC
CAAAAGGGCGGGAATTGCGAAACAAAGTCGACAGGGCAGCCCGCTGACCC
GATGTTGTTGTTCTGCATATCGGATACAACAGCTATATAATATATACTAT
ATAATACCTGGTACGAGTTTTCCCAGGACTTTTCATTTCGAACCGGTTTC
CAACGCAACGGTATTTCACTGGTAACTTTACACAACCTACAGACGACTAC
TAGTTAATACGAAGTGCTAGCTTGCTCGACATGTGTGATGATCGCGACAG
GCCTGTAGCTGGTTGCGTATGGCGCATCTATCTGTTGTTGACTCTTTTCT
CTTTACGATTATTTTGCTATTAATTAATTTAATTTATTACTGGTATATAA
TGGGGTTTGGCACTATTCCCTGTGCCCTCCCTTGCCTTGTATTATGTGCC
ACTCACTACTGGTATGTCGCCTGTCTGTGTATAATAGACAGAAGATGCGT
TACGTACGGTACGACTGGTTGTGTTTGTTTTGCTACGAGTATCTTGTTCT
TGACGCCCATTCATTTTCCGATGGTAGCTACTTGTGGATAAACTACATAC
CAGTATTACGGTAGAAATTTATGGAGTCTTTCATAAATATACCTTGTACG
GAGTATACATTTTTCTTCAAAGGTATCTTGTCGAACTATCAGGTATTATT
AAATATTATACGGTAGGAGAGCGCCTCATTAACTGGCGTTTTAAAGTTCA
ACAGAGCCATTTCGGGCTGACAATCGTTTCGCTATACGAGGAACTCTGCC
GTGCCGCCGTCGCCAAGCATTGACGCGTGATCGCGCGATAAAAGTTAATA
GACTGTTGAGGGCCCGACGTGGGTGCTATTCCACGCAAACATGAACTCCT
GACCCGAGGTATTCCGCCCGAGTTGGTTAGAGCCTCGGGGGGGGGACGGG
GTACAAGGCTTTCATACATATACAGTATACTGTACCCAGAACTAAACGTG
ACACGTAGTAAACAATCAGGTTGGTGCGATTATTCCACCTTGAGCTTCTT
CTCAAACAACGTACAACAATAATTTAGTTTGTTTTCACAAAAATAAGAAA
TACAAATATACTGCTGGTGGTACTTACTGTACGATATATACtattaaTAT
TATACTACGGTATTGGATAGAAAAAGTGGAAAAGCGAGAGGAATAAATTC
TTCGCCTGTCAGTGTTCTCCAAAGAAGATACGGTATACAGTATACCTGGT
ACACAGTAAAAATGGATAAATAAACGAATGAAGCAAAATGAAGCCAAGGC
AGCTTGGTCGAAAGAAGGCAGCAAAAACGCGAGTAGGACCGCTTCTTGTC
GGAGTAAGACCCCAAAAGTACAGAAATATTGCTGGGGTAACTTTTCGTGA
TGGGAGGAGCAGTGAAGCGTTTTGTCCTGGCCCCGGATTTTTTCTTTTTT
CATTTTTCATTTTCGATTTTTTTGTGATGCCGGCCCCCAAAAATAACGTA
GTTCGGATCAATCTTATCTCACACATTTGCCAACTAGCTATTGGAAGCCC
AAGTGACTAGACTACTAGTACAAAACATTGCCGTGTGGGCCACTGCCGTT
CCATTACCCAAAAGTCACAGGCGGCACAGCGGAGAATCTTAACGGGGGCT
CACGCCTTTGGGCCGAAAAATATATATTTTGGGCACAAAATACTGATGAA
ACAGCCTCACGACTGTAGCTACAAGCCAATGGTCGGGAGGTCAAATGGAG
CTTTATTAAAGAAAACAGAGAGAAAACTGAAGATCCTCTTTCGAGCACCT
CGGATAACGGAGCAACCATGGCGCCATTACAGCTCTGCAAGCTACATACG
TAATCCTATGACTCAGAGCTATCGGCCTGGGGGGGCTTGTAGGTCATGTG
GCACGATACCAAGGAAATCGTATCTGAGCCCAGGACCGTTCCTCGTTGTT
TCTCACTATACTATTTGGACCACGGTCTGTAAGTTGGAAGCGCTAAACCA
CTAGACTACTAGACACGACTCAGTAGTCTAGTGGTTTAGTGCATCCACCT
AACAGTGATCTCCGGGGACCTCCCCTCGCCACGTACTGTATGGTATCTAC
ATTCTTCGTCGCCCGAGTGGTCTAGTAGGTAACCTGCATACCTGCTAGTG
CGGAAGTCGTGAGTTCGATTCTTAGCTTAAGCAGAATTTGTGTTCTTTCT
TTCGTAACGGAAAGCGTGGGAACGTGAGTAAGTAAAATTCAACCATTGGT
TGACGAGTTGTAAGAGTGCTGAACTTGCATCGCGATAAAAAATGTAAGGC
GTGAACCGGGGAGAGATGGGAAGATCCTTTGTGACCACAGGCAGGATTGT
AATTAGAGGTCAATCGGCTATAAGTGTGTGATTAAAAAATAAAATAAAAT
AAATGGCCGCACTAACTTACAAAGGATTTTCGCGGTTCAATCCCCGGTGA
CGATGAAAAAGTTGGTTGCGGCCATTGTAGATACTGCAGTGCGTGGCGAG
GGGAGGTCCCCGGAGATCACTGTTGTTCCATGCAAATCTTTTGTAAGTTG
GAAGCGCTAAACCACTAGACTACTCAGTCATGACTCAGTAGTCTAGTGGT
TTAGTGCATCTAACTAACACGGTCATAACCCTTAAAATACCTCCTGTGAC
CTATGGCCCCCGGGCGAGCTCGATGCAGGTAGGCTGCCCTATTACCGCGG
GTGCATTTGCGTAGCACATTGTAAACACTGCAGATAAAGGTCCGAGACTA
GCTGATATATCTCTAGTGGCAATATATGTTCGAGAGTTGTGCTTGGTCGG
CCCGAGCCAGTTCTCCCGCCATGCAGCAGTAGAACGGCAACAGCTTTGGA
CCGCTCTCGAGCCCGATGTCACCTCCGATACTGCTGTTTTGCTCAACAGA
CCTCCCCAACCTCTGCTGGAGCACCCTCCGAAGAGGACAACCTTCTACGT
GCTACTAAGTCGAAGAAAGTTGTCTAAATGGTGTGTGTGTAGTCACCTTT
CTGTGGCATTCGTTGTTGTGTGAAACCCAGGTTTACACAAAATCACCAAA
ACGTCGGCCGCCGAACCTCGGTACATGACCTTCGAAGCCCAAACCTTCCT
ACCGAACAAAGATACATGACTATACATTTTTACGTTCGGAAGATGTGACG
ATAGGGACAGCAGCGGTCTGGCACCCCAAATTGCTGATACCAAAATTGCA
CTTTGAGGCAAAAACGCCCGTATTCGCGCCTTTCTTGTACCGATCAACCG
ATCAACCTATTTTTTTAAGGAAATGGCTATTTGGCCCACCGGTGGGCCAT
TCCCAATTTACCCCACCACCTCGATCTCGCGTCAGAAGACACGGTTGGTC
ACAGTAAATGCATGAGTGTGTTGGCGCGTCGCAGGGCTATCATGGGGTTT
ATCGTGCAGCCCAAACGGTCCTGTCTACGTGCTGTTACGGCCGGTGGGGT
GGTTGGTGTTTTCTGGTATGTAAGGGCAAATAGCCAAACATACCAGAAAA
CACCAACCACCCCACCGGCCGTGGCAGCTCGTAGACAGAACCGTTTGGGC
TGCACGATAGATCCCATGATAGCTAACCCTAACCCTAACACACCCATGCA
TATAATATGACCAACCAAGTTTTCTGACGCGAGAACCAGGTCGGGGGTAA
ACAAGAGAATAGGCCACCGGTGGGGCAAATAGCCATACCGTTTTTTTAAT
GTTGTAGAGGTGTCGGAATGTTTCTGGATCGTCCCTGACTAATCAGGGGC
GGAATTGCCGATGTTTGTATGCCCTTAATAACAATTTGACGAACCGTAAC
AGAATACTTTCACATAAATGAGGTGTTTGAAGAAAATACAGAACGCACCT
AGACCTTCTGAGCATCCCCCAGTCAGGGGGGGAAAATGTCAAAACGTTCA
GGTCGGCTCAAAGGCTGCAAATACAAAACTTCTTCATGGCATTTAAACGG
GTTCCCCTATGGTAGTACCATTGGGTCAACAGTATAATATCGGGGAGAAA
ATGAGGTGTTCGTTCTATTCCTATAAGAAAAAGGGGCCCCCGTTAAACTC
TATTCGAGAGAAAGCGGCTGTGGTACTAAAAATAAGTTGATCGATAAGGT
TGTACCAATAATAAAAATGAATATCAGGTCTCTGTGCAATTATGAATATA
GAAGTGTATACGTAATACAGAACAGAGCTGCCACATACGTTCGGCCAATC
AGGGCCCACTAATACAATGAAAGTGCTCCAGGAAAATCCTCCTTGTACAG
CGAATCTCGCCCTTAATCAAGAATTTCAAGTTTTTTGCGAACCGGAACAC
CTCCAGGGACATTTCACCTTGAGCTTGGCGGGACTCTGCTACACGACGTC
ACGGTAGATCATATACGATTGAGAGTAGTAAAGCCGCTCAAGATGAGCAT
TACGACAACCGTTTGGGTAGTAAAATTGCCATTGATGTTCGGGGGGTGTT
GCTTGCAGTACATAAATAGGCGGAAGCAGCATAATCCACTCGAGGTCGAG
CTATCTATGTGTTGTTGGCTGTCCTTCGAACGCTGCTTTTTGTTTCACTG
TCAGGTACAAAGATACAAAATGACTTATTTATAGAATGAAAATAATAGCA
CACCACCAACGCTTATAGTAATACTTCAAGCCCTTATAGCTGTACAAACA
GAGGTACCTTATATATCTACACTACTTGTAGTACAGCAACTACATTAAGT
ACTACTTCGTACTTTGAATACTGCCTGTAGTGCAGCAGCAGTAAATTATA
TAGATGCCCAGACACGGAGAACAGCTGGATCCTGCTGCACACGCGGGAGG
CAAAGCATTGATAGACATGCGACTACAGCGACAGTCAGAAACACAAAAGA
AGTTTGTAGAGGCGCCGTATGTCAGATAACATGCGGACACAAGACTGTCT
TAGTCGTCTGTTCGCTGGCATTCAAAGGTTCTCCCAATATCGTTTGTGGT
AAGTATCTACAAAGGAGTCATCAGGTGTCACACATACATGTTGTAGGGGT
TGTTCCGGTTTCCATGGATTAAAATACTTTTGGTGCACTTTCTGTGGCGC
CATTTTACAACAACTACATGAAATTTCCCCGGGAAAATTATTTACAAATT
TCGGGGCACAGAAAATACGTTTTTTTACGCCTGACTATTGAGCTACAAGT
AAAAAGTGGCTTACTCGTAAGACAAGCATCTGCCACCCTACTCGGCGCGA
CTTCATTGGCAACCCTCAGAACCAACTACTCAACATACCTATCAATAGTG
GCCCCTATGTTCTTACAAATGATGTTCACAATTTTTTGTAAGATATTTAG
AACGTTTTCCATATGGTTCAAAATATAAATGATTTAGACTGTTTTTCATG
TGGTTCGAATACTAAATTATTTACACTGTTTTCATGGCGATCGAAATCAG
GCCGATCGAAACCTATTCGCCATGTCAGTCCCCAATTCCTATAAATTACC
GTATTCTTCATGGCGACTGAAATGGCCAGTTTCAACCCCAATCTACCGCG
CTCTATAATAGCTCTATTGGTCCAGAGTAGAGCTAAGCCCCGCAGGACCC
ACTGACTTGAGCGTGGATAGGAAACGAATGTCAATTGCCACTTCACCCCC
TCGTCCGTTAGGAGTGCCTCCAGCGGAGGAGACCCGGACGGGGGTATCGT
GATCGAGTACGGCCTCGGGCTTCTCGCCTTGGCCAAGTCGGACAAGGATG
CTGTGTTTCGCGCGGTCGTGACTTCGATGGGCAGCAGCCCAAACACCAAG
GAGCAAGTCCGGCGAGCTCTCTGCCGCTGGGCGGCATCCAACCGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig6609:11324..18668+

>mRNA_F-serratus_M_contig6609.17594.1 ID=mRNA_F-serratus_M_contig6609.17594.1|Name=mRNA_F-serratus_M_contig6609.17594.1|organism=Fucus serratus male|type=CDS|length=546bp|location=Sequence derived from alignment at F-serratus_M_contig6609:11324..18668+ (Fucus serratus male)
ATGTTGGCGCGGACACAGGAAAACGAATCGCCCCGATGCTCTTGCAGCAT
CGAGGAATTGACAAGCAGGACCCTGTCGAGACTTGAAAGATGTTGGCGCG
GACACAGGAAAACGAATCGCCCCGATGCTCTTGCAGCATCGAGGAATTGA
CAAGCAGGACCCTGTCGAGACTTGAAAGGAGTGCCTCCAGCGGAGGAGAC
CCGGACGGGGGTATCGTGATCGAGTACGGCCTCGGGCTTCTCGCCTTGGC
CAAGTCGGACAAGGATGCTGTGTTTCGCGCGGTCGTGACTTCGATGGGCA
GCAGCCCAAACACCAAGGAGCAAGTCCGGCGAGCTCTCTGCCGCTGGGCG
GCATCCAACCGCGAGTGCCTCCAGCGGAGGAGACCCGGACGGGGGTATCG
TGATCGAGTACGGCCTCGGGCTTCTCGCCTTGGCCAAGTCGGACAAGGAT
GCTGTGTTTCGCGCGGTCGTGACTTCGATGGGCAGCAGCCCAAACACCAA
GGAGCAAGTCCGGCGAGCTCTCTGCCGCTGGGCGGCATCCAACCGC
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