mRNA_F-serratus_M_contig660.17581.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig660.17581.1 vs. uniprot
Match: UPI0001A836C9 (ATP-dependent DNA helicase PIF1 n=2 Tax=Sorghum bicolor TaxID=4558 RepID=UPI0001A836C9) HSP 1 Score: 122 bits (305), Expect = 2.820e-28 Identity = 86/236 (36.44%), Postives = 126/236 (53.39%), Query Frame = 2
Query: 515 PALAKLLWHMRIGDGNEAQNEHGEVDLPGYFFPP-------LGDVKTTIFP-YEASMSRPS---GRTIVAPRIHHVRLLNAEILERLSGPGTPSLSIDTTGGPGHS---SAILNSITPTGMPTHEFPLKVGAPIILLRTTNPYYGMFNSTRLI-------LLNATLQESIYG-----IPRIVINSSEEELM-FSLKKIQFSVTLAYAIIINKVQGQTLDYVGIFLPSPNFSHGQLF 1141
P A+ L +RIG G E N GE+ LP P L + IFP A+MS S R I++PR V ++N +++ R G S D+ H+ S LN++TP G+P H LK+G P+ILLR +P G+ N TRL+ +++A + + +PRI + S++E+ F K+ QF + L++A+ INK QGQTL VG++LP P FSHGQL+
Sbjct: 23 PWFAEYL--LRIGGGLEEANGDGEIRLPDEICIPHTREDSDLDTLIDCIFPALNANMSNKSYITSRAILSPRNDWVDMVNMKMISRFQGNEMVYHSFDSAVDDPHNYCPSEFLNTLTPNGLPPHVLKLKIGCPVILLRNIDPAGGLCNGTRLVVRGFQRNIIDAEIMVGDHAGKRIFLPRIPLCPSDDEMFPFQFKRKQFPIRLSFAMTINKAQGQTLPNVGVYLPEPVFSHGQLY 256
BLAST of mRNA_F-serratus_M_contig660.17581.1 vs. uniprot
Match: UPI000B4260EA (ATP-dependent DNA helicase PIF1-like n=1 Tax=Sorghum bicolor TaxID=4558 RepID=UPI000B4260EA) HSP 1 Score: 120 bits (302), Expect = 5.380e-28 Identity = 87/236 (36.86%), Postives = 128/236 (54.24%), Query Frame = 2
Query: 515 PALAKLLWHMRIGDGNEAQNEHGEVDLPGYFFPPL----GDVKTTI---FP-YEASMSRPS---GRTIVAPRIHHVRLLNAEILERLSGPGTPSLSIDTTGGPGHS---SAILNSITPTGMPTHEFPLKVGAPIILLRTTNPYYGMFNSTRLI-------LLNATLQESIYG-----IPRIVINSSEEELM-FSLKKIQFSVTLAYAIIINKVQGQTLDYVGIFLPSPNFSHGQLF 1141
P A+ L +RIG G+E N +GE+ LP P GD+ I FP A+MS S R I++ R V ++N +++ R G S D+ H+ S LN++TP G+P H LK+G PIILLR +P G+ N TRL+ +++A + + +PRI + S++E+ F K+ QF + L++A+ INK QGQTL VG++LP P FSHGQL+
Sbjct: 7 PWFAEYL--LRIGGGSEEANCNGEIHLPDDICIPQNGKDGDLDMLIDCIFPALNANMSDKSYITSRAILSARNDSVDMINMKMISRFQGDEMVYHSFDSAVDDPHNHYPSEFLNTLTPNGLPPHVLKLKIGCPIILLRNIDPAGGLCNGTRLVVQGFQRNIIDAEIMVGDHAGKRIFLPRIPLCPSDDEMFPFQFKRKQFPIRLSFAMTINKAQGQTLPNVGVYLPEPVFSHGQLY 240
BLAST of mRNA_F-serratus_M_contig660.17581.1 vs. uniprot
Match: A0A815VZ45_ADIRI (ATP-dependent DNA helicase n=2 Tax=Adineta ricciae TaxID=249248 RepID=A0A815VZ45_ADIRI) HSP 1 Score: 124 bits (312), Expect = 2.300e-27 Identity = 86/223 (38.57%), Postives = 124/223 (55.61%), Query Frame = 2
Query: 536 WHMRIGDGNEAQNEHGEVDLPGYFFPPLGDVKTTIFPYEASMSR-PS--GRTIVAPRIHHVRLLNAEILERLSGPGTPSLSIDTTG------GPGHSSAILNSITPTGMPTHEFPLKVGAPIILLRTTNPYYGMFNSTRLI---LLNATLQ-ESIYG--------IPRIVINSSEEELMFSLKKIQFSVTLAYAIIINKVQGQTLDYVGIFLPSPNFSHGQLF 1141
W +++G+G N + E++LP G++ IF E S+ P+ RTI+ P+ H L+N E+L+RLSG SID G + + LNS+TP+GMP H+ LK+GA ++LLR + + N RLI L N T+ E + G IPRI + S+ L F L++ QF V L++A+ INK QGQT D +G+ LP P FSHGQL+
Sbjct: 769 WLIKLGNGELISNGNDEIELPSSCIL-NGNLVDEIFGREISIEDIPTLCNRTILCPKNEHSLLVNEEVLQRLSGMEKLYTSIDEVGCEDGEDATNYPTEFLNSLTPSGMPPHKLKLKIGAIVMLLRNLDVSQDLCNGIRLIVRRLQNYTIDCEVVTGSNKGNRVLIPRITLTPSDAFLPFKLRRHQFPVRLSFAMTINKSQGQTFDRLGLLLPQPVFSHGQLY 990
BLAST of mRNA_F-serratus_M_contig660.17581.1 vs. uniprot
Match: A0A6P6VHP9_COFAR (ATP-dependent DNA helicase n=3 Tax=Coffea TaxID=13442 RepID=A0A6P6VHP9_COFAR) HSP 1 Score: 121 bits (304), Expect = 7.820e-27 Identity = 87/236 (36.86%), Postives = 121/236 (51.27%), Query Frame = 2
Query: 515 PALAKLLWHMRIGDGNEAQNEHGEVDLPGYFFPPLGDVKTTI-----------FPYEASMSRPSGRTIVAPRIHHVRLLNAEILERLSGPGTPSLSIDTTGGPGHSSA---ILNSITPTGMPTHEFPLKVGAPIILLRTTNPYYGMFNSTRLILLN-------ATLQESIY-----GIPRIVINSSEEELM-FSLKKIQFSVTLAYAIIINKVQGQTLDYVGIFLPSPNFSHGQLF 1141
P+ + L ++IGDG E ++ LP P D T++ F + S S + R I++ V+ +N +++R G T LS D T P + LNSI P G+P HE LK P+ILLR NP G+ N TRLI LN A + I+ IPRI ++SS +E K+ QF ++L +A+ INK QGQTLD+VGI+L P FSHGQL+
Sbjct: 234 PSFSDFL--LKIGDGTEPTILDNKIKLPSSMLIPFIDDTTSLNLLINTVYPSLFDFLTSSSAVANRAILSTTNETVQEVNQILIQRFPGQETRYLSFDQTLDPTKQADHGDFLNSIQPPGLPPHELILKPMCPVILLRNLNPAQGLCNGTRLICLNFDKNIIHAEISVGIHIGKHVFIPRIPLHSSNDESYPIPFKRTQFPISLCFAMTINKSQGQTLDFVGIYLKEPVFSHGQLY 467
BLAST of mRNA_F-serratus_M_contig660.17581.1 vs. uniprot
Match: UPI000B4237C8 (ATP-dependent DNA helicase PIF1-like n=1 Tax=Sorghum bicolor TaxID=4558 RepID=UPI000B4237C8) HSP 1 Score: 120 bits (302), Expect = 1.880e-26 Identity = 87/236 (36.86%), Postives = 128/236 (54.24%), Query Frame = 2
Query: 515 PALAKLLWHMRIGDGNEAQNEHGEVDLPGYFFPPL----GDVKTTI---FP-YEASMSRPS---GRTIVAPRIHHVRLLNAEILERLSGPGTPSLSIDTTGGPGHS---SAILNSITPTGMPTHEFPLKVGAPIILLRTTNPYYGMFNSTRLI-------LLNATLQESIYG-----IPRIVINSSEEELM-FSLKKIQFSVTLAYAIIINKVQGQTLDYVGIFLPSPNFSHGQLF 1141
P A+ L +RIG G+E N +GE+ LP P GD+ I FP A+MS S R I++ R V ++N +++ R G S D+ H+ S LN++TP G+P H LK+G PIILLR +P G+ N TRL+ +++A + + +PRI + S++E+ F K+ QF + L++A+ INK QGQTL VG++LP P FSHGQL+
Sbjct: 265 PWFAEYL--LRIGGGSEEANCNGEIHLPDDICIPQNGKDGDLDMLIDCIFPALNANMSDKSYITSRAILSARNDSVDMINMKMISRFQGDEMVYHSFDSVVDDPHNHYPSEFLNTLTPNGLPPHVLKLKIGCPIILLRNIDPAGGLCNGTRLVVRGFQRNIIDAEIMVGDHAGKRIFLPRIPLCPSDDEMFPFQFKRKQFPIRLSFAMTINKAQGQTLPNVGVYLPEPVFSHGQLY 498
BLAST of mRNA_F-serratus_M_contig660.17581.1 vs. uniprot
Match: UPI001247475E (uncharacterized protein LOC115984536 n=1 Tax=Quercus lobata TaxID=97700 RepID=UPI001247475E) HSP 1 Score: 121 bits (304), Expect = 2.060e-26 Identity = 66/150 (44.00%), Postives = 91/150 (60.67%), Query Frame = 1
Query: 1 FFFDSSSGTGKTFLYTTLIAAVRSQGKTALAVASSGVTCTPLPGGRTAYYSQFEIPIRVSADEASYLDRHRKLTELPHRRDAICWGEVPMAYG*NHEVVERTLASFMSNNLPWGGNKIIVMEEDFRKVIPVVHRSMHG*VFDACLKCSPL 450
FF D GTGKTFLY T++AA+R G A+A A+SG+ T LPGGRTA+ S+F+IP+ + A + + L EL R I W E PM E ++RT M NLP+GG K++++ DFR+V+PVV + + DAC+ SPL
Sbjct: 130 FFVDGPGGTGKTFLYRTILAALRKAGHIAIATATSGIAATLLPGGRTAH-SRFKIPLTLDASSTCSISKQSDLAELIRRATIIIWDEAPMVNQRALESLDRTFRDIMEVNLPFGG-KVLILGGDFRQVLPVVPKGTKAKMIDACIVKSPL 277
BLAST of mRNA_F-serratus_M_contig660.17581.1 vs. uniprot
Match: UPI000B42688F (uncharacterized protein LOC8076113 n=1 Tax=Sorghum bicolor TaxID=4558 RepID=UPI000B42688F) HSP 1 Score: 121 bits (304), Expect = 2.550e-26 Identity = 88/236 (37.29%), Postives = 126/236 (53.39%), Query Frame = 2
Query: 515 PALAKLLWHMRIGDGNEAQNEHGEVDLPGYFFPP-------LGDVKTTIFP-YEASMSRPS---GRTIVAPRIHHVRLLNAEILERLSGPGTPSLSIDTTGGPGHS---SAILNSITPTGMPTHEFPLKVGAPIILLRTTNPYYGMFNSTRLILL----NATLQESIYG--------IPRIVINSSEEELM-FSLKKIQFSVTLAYAIIINKVQGQTLDYVGIFLPSPNFSHGQLF 1141
P A+ L +RIG G+E N +GEV LP P L + IFP A+MS S R I++ R V ++N +++ R G S D+ H+ S LN++TP G+P H LK+G P+ILLR +P G+ N TRL++ N E + G +PRI + S++E+ F K+ QF + L++A+ INK QGQTL VG++LP P FSHGQL+
Sbjct: 963 PWFAEYL--LRIGGGSEETNCNGEVHLPDDICIPQTEKDSDLDTLIDCIFPALNANMSNKSYITSRAILSSRNDWVDMINMKMISRFQGNEMVYHSFDSAVDDPHNYYPSEFLNTLTPNGLPPHVLKLKIGCPVILLRNIDPAGGLCNGTRLVVRGFQRNIVDAEIMVGDHAGKRIFLPRIPLCPSDDEMFPFQFKRKQFPIRLSFAMTINKAQGQTLPNVGVYLPEPVFSHGQLY 1196
BLAST of mRNA_F-serratus_M_contig660.17581.1 vs. uniprot
Match: UPI00052FF883 (ATP-dependent DNA helicase PIF6-like n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=UPI00052FF883) HSP 1 Score: 116 bits (291), Expect = 2.700e-26 Identity = 84/236 (35.59%), Postives = 123/236 (52.12%), Query Frame = 2
Query: 515 PALAKLLWHMRIGDGNEAQNEHGEVDLPGYFFPPLGDVKTTI-------FP-YEASMSRPS---GRTIVAPRIHHVRLLNAEILERLSGPGTPSLSIDTTGGPGHS---SAILNSITPTGMPTHEFPLKVGAPIILLRTTNPYYGMFNSTRLILL----NATLQESIYG--------IPRIVINSSEEELM-FSLKKIQFSVTLAYAIIINKVQGQTLDYVGIFLPSPNFSHGQLF 1141
P A L +R+ +G E NE G + LP P D ++ I FP SM+ P+ R I++ + V +N +++ER +G S D+ H S LN +TP G+P H LK+ PIILLR +P G+ N RLI+ NA E + G +PRI + S++++ F K+ QF V L++A+ INK QGQT+ VG++LP+P FSHGQL+
Sbjct: 16 PWFAAFL--LRVSNGTEEANEEGNIKLPEDVCVPSTDKESDIERLIDHVFPALNTSMADPNYITSRAILSTKNDCVDKINMQMIERFNGEEMVYHSFDSAEDDPHGYYPSEFLNLLTPNGLPPHVLKLKINCPIILLRNIDPVNGLCNGRRLIVRGFQRNAIDAEIVVGQQHGKRVFLPRIPLCPSDDDMFPFLFKRKQFPVRLSFAMTINKAQGQTIPIVGVYLPNPVFSHGQLY 249
BLAST of mRNA_F-serratus_M_contig660.17581.1 vs. uniprot
Match: A0A1D6NZH8_MAIZE (ATP-dependent DNA helicase n=3 Tax=Zea mays TaxID=4577 RepID=A0A1D6NZH8_MAIZE) HSP 1 Score: 121 bits (304), Expect = 2.770e-26 Identity = 83/236 (35.17%), Postives = 127/236 (53.81%), Query Frame = 2
Query: 515 PALAKLLWHMRIGDGNEAQNEHGEVDLPGYFFPP-------LGDVKTTIFP-YEASMSRPS---GRTIVAPRIHHVRLLNAEILERLSGPGTPSLSIDTTGGPGHS---SAILNSITPTGMPTHEFPLKVGAPIILLRTTNPYYGMFNSTRLILL----NATLQESIYG--------IPRIVINSSEEELM-FSLKKIQFSVTLAYAIIINKVQGQTLDYVGIFLPSPNFSHGQLF 1141
P A+ L +R+GDG E N G++ LP P L ++ +FP +MS + R I++ R V ++NA++++R G S D+ H+ LN++TP G+P H LK+G P+ILLR +P G+ N TRL++ N+ E + G +PRI + S+EE+ F K+ QF V L++A+ +NK QGQT+ VG++LP P FSHGQL+
Sbjct: 1443 PWFAEYL--LRVGDGTEDTNSDGDICLPDEVCVPYSGSDSDLDNLIDFVFPNLNENMSDSTYITSRAILSTRNDWVDMINAKMIDRFQGEHMVYHSFDSAMDDPHNYYPPEFLNTLTPNGLPPHVLKLKIGCPVILLRNIDPANGLCNGTRLVIRGFQRNSIDAEIVLGQHAGKRIFLPRIPLCPSDEEMFPFQFKRKQFPVRLSFAMTVNKAQGQTIPNVGVYLPEPVFSHGQLY 1676
BLAST of mRNA_F-serratus_M_contig660.17581.1 vs. uniprot
Match: A0A1D6HJR0_MAIZE (ATP-dependent DNA helicase n=4 Tax=Zea mays TaxID=4577 RepID=A0A1D6HJR0_MAIZE) HSP 1 Score: 121 bits (304), Expect = 2.820e-26 Identity = 83/236 (35.17%), Postives = 129/236 (54.66%), Query Frame = 2
Query: 515 PALAKLLWHMRIGDGNEAQNEHGEVDLPGYFFPP-------LGDVKTTIFP-YEASMSRPS---GRTIVAPRIHHVRLLNAEILERLSGPGTPSLSIDTTGGPGHS---SAILNSITPTGMPTHEFPLKVGAPIILLRTTNPYYGMFNSTRLILL----NATLQESIYG--------IPRIVINSSEEELM-FSLKKIQFSVTLAYAIIINKVQGQTLDYVGIFLPSPNFSHGQLF 1141
P A+ L +R+G+G E N G++ LP P L ++ +FP +MS + R I++ R V ++NA+++ER G S D+ H+ LN++TP G+P H LK+G P+ILLR +P G+ N TRL++ N+ E + G +PRI + S+EE+ F K+ QF+V L++A+++NK QGQT+ VG++LP P FSHGQL+
Sbjct: 1502 PWFAEYL--LRLGNGTEDTNSDGDICLPDEVCVPYSGSDSDLDNLIDFVFPNLNENMSDSTYITSRAILSTRNDWVDMINAKMIERFQGEHMVYHSFDSAMDDPHNYYPPEFLNTLTPNGLPPHVLKLKIGCPVILLRNIDPANGLCNGTRLVVRGFQRNSIDAEIVLGQHAGKRIFLPRIPLCPSDEEMFPFQFKRKQFTVRLSFAMMVNKAQGQTIPNVGVYLPEPVFSHGQLY 1735 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig660.17581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig660.17581.1 >prot_F-serratus_M_contig660.17581.1 ID=prot_F-serratus_M_contig660.17581.1|Name=mRNA_F-serratus_M_contig660.17581.1|organism=Fucus serratus male|type=polypeptide|length=239bp MRASSVLLSLRNGRRLSTHHQHGGRGGGRQPALAKLLWHMRIGDGNEAQNback to top mRNA from alignment at F-serratus_M_contig660:111377..112572+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig660.17581.1 ID=mRNA_F-serratus_M_contig660.17581.1|Name=mRNA_F-serratus_M_contig660.17581.1|organism=Fucus serratus male|type=mRNA|length=1196bp|location=Sequence derived from alignment at F-serratus_M_contig660:111377..112572+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig660:111377..112572+ >mRNA_F-serratus_M_contig660.17581.1 ID=mRNA_F-serratus_M_contig660.17581.1|Name=mRNA_F-serratus_M_contig660.17581.1|organism=Fucus serratus male|type=CDS|length=1434bp|location=Sequence derived from alignment at F-serratus_M_contig660:111377..112572+ (Fucus serratus male)back to top |