mRNA_F-serratus_M_contig660.17587.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig660.17587.1
Unique NamemRNA_F-serratus_M_contig660.17587.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig660.17587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig660contigF-serratus_M_contig660:191504..192359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size856
Cds size576
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig660.17587.1prot_F-serratus_M_contig660.17587.1Fucus serratus malepolypeptideF-serratus_M_contig660 191568..192143 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932025.7700932-UTR-F-serratus_M_contig660:191503..1915671622932025.7700932-UTR-F-serratus_M_contig660:191503..191567Fucus serratus maleUTRF-serratus_M_contig660 191504..191567 +
1690964108.6891193-UTR-F-serratus_M_contig660:191503..1915671690964108.6891193-UTR-F-serratus_M_contig660:191503..191567Fucus serratus maleUTRF-serratus_M_contig660 191504..191567 +
1622932025.8141873-UTR-F-serratus_M_contig660:192143..1923591622932025.8141873-UTR-F-serratus_M_contig660:192143..192359Fucus serratus maleUTRF-serratus_M_contig660 192144..192359 +
1690964108.7145803-UTR-F-serratus_M_contig660:192143..1923591690964108.7145803-UTR-F-serratus_M_contig660:192143..192359Fucus serratus maleUTRF-serratus_M_contig660 192144..192359 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932025.7868896-CDS-F-serratus_M_contig660:191567..1921431622932025.7868896-CDS-F-serratus_M_contig660:191567..192143Fucus serratus maleCDSF-serratus_M_contig660 191568..192143 +
1690964108.7024934-CDS-F-serratus_M_contig660:191567..1921431690964108.7024934-CDS-F-serratus_M_contig660:191567..192143Fucus serratus maleCDSF-serratus_M_contig660 191568..192143 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig660.17587.1

>prot_F-serratus_M_contig660.17587.1 ID=prot_F-serratus_M_contig660.17587.1|Name=mRNA_F-serratus_M_contig660.17587.1|organism=Fucus serratus male|type=polypeptide|length=192bp
MGGGDVEAIASADLDEYRAAVSGEVEGATAARGENGGRLAAGDGDMDVEN
DAEVFARSRAAAPRNQANGATGPRQRAPRKCKFWRTSGGCRAGSDCMFRH
DAAGHRGGAIGRLNNTEQGEGAKLETAEARASVDGRGDRNPVASEAGVME
CGLDVGGVDGLVDGLRKLSIPAHLSFGRTGRRGKLLGGATR*
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mRNA from alignment at F-serratus_M_contig660:191504..192359+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig660.17587.1 ID=mRNA_F-serratus_M_contig660.17587.1|Name=mRNA_F-serratus_M_contig660.17587.1|organism=Fucus serratus male|type=mRNA|length=856bp|location=Sequence derived from alignment at F-serratus_M_contig660:191504..192359+ (Fucus serratus male)
GAAAGCGGGCGCGACAGGGTCAACGAAATCGGCCACCTCTCCTACCATCG
ACACGGGGGATGAGATGGGGGGCGGTGATGTCGAAGCGATCGCGTCCGCG
GACTTGGACGAATATCGAGCGGCGGTATCGGGAGAAGTTGAGGGGGCTAC
AGCAGCGCGCGGGGAAAATGGCGGCCGGCTGGCTGCTGGGGATGGTGACA
TGGACGTCGAAAACGACGCTGAAGTTTTCGCTCGTTCACGGGCGGCAGCC
CCGAGGAATCAGGCCAACGGTGCTACGGGTCCGAGGCAACGCGCGCCGAG
GAAGTGCAAGTTCTGGCGGACAAGCGGAGGGTGCCGCGCCGGCAGTGATT
GTATGTTCAGGCACGACGCGGCCGGGCACCGAGGGGGGGCTATTGGAAGA
CTGAATAACACGGAGCAAGGAGAAGGCGCCAAACTAGAAACTGCTGAAGC
TCGAGCCAGTGTAGACGGTCGTGGCGATAGAAATCCTGTGGCGTCAGAAG
CCGGGGTGATGGAATGTGGGTTGGATGTCGGTGGTGTGGATGGGCTCGTC
GATGGTTTGAGGAAACTCTCGATCCCTGCGCACCTAAGCTTTGGCAGGAC
TGGTCGGCGTGGAAAGCTGCTGGGCGGTGCCACGAGGTGATTTGGTTGTA
TCATATGCTCGCGAGACTTGGTTTACCCTAGGGGTTTTGTAGTATTTCAC
CGGCTTACTTTTTACGGAAGACTGTGCGGGGCCGGGGAAACGTAACAAAT
ATGCTGACGAGGAAAGACGGTCGGAGAATGTATGATCTCTAGCTATATAT
GGAAGTTCAAGGCAAGCACACACCGTTCGATTGATAATATATGGGAGAGG
TGCCTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig660:191504..192359+

>mRNA_F-serratus_M_contig660.17587.1 ID=mRNA_F-serratus_M_contig660.17587.1|Name=mRNA_F-serratus_M_contig660.17587.1|organism=Fucus serratus male|type=CDS|length=1152bp|location=Sequence derived from alignment at F-serratus_M_contig660:191504..192359+ (Fucus serratus male)
ATGGGGGGCGGTGATGTCGAAGCGATCGCGTCCGCGGACTTGGACGAATA
TCGAGCGGCGGTATCGGGAGAAGTTGAGGGGGCTACAGCAGCGCGCGGGG
AAAATGGCGGCCGGCTGGCTGCTGGGGATGGTGACATGGACGTCGAAAAC
GACGCTGAAGTTTTCGCTCGTTCACGGGCGGCAGCCCCGAGGAATCAGGC
CAACGGTGCTACGGGTCCGAGGCAACGCGCGCCGAGGAAGTGCAAGTTCT
GGCGGACAAGCGGAGGGTGCCGCGCCGGCAGTGATTGTATGTTCAGGCAC
GACGCGGCCGGGCACCGAGGGGGGGCTATTGGAAGACTGAATAACACGGA
GCAAGGAGAAGGCGCCAAACTAGAAACTGCTGAAGCTCGAGCCAGTGTAG
ACGGTCGTGGCGATAGAAATCCTGTGGCGTCAGAAGCCGGGGTGATGGAA
TGTGGGTTGGATGTCGGTGGTGTGGATGGGCTCGTCGATGGTTTGAGGAA
ACTCTCGATCCCTGCGCACCTAAGCTTTGGCAGGACTGGTCGGCGTGGAA
AGCTGCTGGGCGGTGCCACGAGGTGAATGGGGGGCGGTGATGTCGAAGCG
ATCGCGTCCGCGGACTTGGACGAATATCGAGCGGCGGTATCGGGAGAAGT
TGAGGGGGCTACAGCAGCGCGCGGGGAAAATGGCGGCCGGCTGGCTGCTG
GGGATGGTGACATGGACGTCGAAAACGACGCTGAAGTTTTCGCTCGTTCA
CGGGCGGCAGCCCCGAGGAATCAGGCCAACGGTGCTACGGGTCCGAGGCA
ACGCGCGCCGAGGAAGTGCAAGTTCTGGCGGACAAGCGGAGGGTGCCGCG
CCGGCAGTGATTGTATGTTCAGGCACGACGCGGCCGGGCACCGAGGGGGG
GCTATTGGAAGACTGAATAACACGGAGCAAGGAGAAGGCGCCAAACTAGA
AACTGCTGAAGCTCGAGCCAGTGTAGACGGTCGTGGCGATAGAAATCCTG
TGGCGTCAGAAGCCGGGGTGATGGAATGTGGGTTGGATGTCGGTGGTGTG
GATGGGCTCGTCGATGGTTTGAGGAAACTCTCGATCCCTGCGCACCTAAG
CTTTGGCAGGACTGGTCGGCGTGGAAAGCTGCTGGGCGGTGCCACGAGGT
GA
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