mRNA_F-serratus_M_contig659.17561.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig659.17561.1
Unique NamemRNA_F-serratus_M_contig659.17561.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig659.17561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig659contigF-serratus_M_contig659:304678..305234 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size557
Cds size555
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932020.5111415-CDS-F-serratus_M_contig659:304677..3052321622932020.5111415-CDS-F-serratus_M_contig659:304677..305232Fucus serratus maleCDSF-serratus_M_contig659 304678..305232 +
1690964105.8772116-CDS-F-serratus_M_contig659:304677..3052321690964105.8772116-CDS-F-serratus_M_contig659:304677..305232Fucus serratus maleCDSF-serratus_M_contig659 304678..305232 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig659.17561.1prot_F-serratus_M_contig659.17561.1Fucus serratus malepolypeptideF-serratus_M_contig659 304678..305232 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig659.17561.1

>prot_F-serratus_M_contig659.17561.1 ID=prot_F-serratus_M_contig659.17561.1|Name=mRNA_F-serratus_M_contig659.17561.1|organism=Fucus serratus male|type=polypeptide|length=185bp
NFQPTPPPCPPPPLNAPSPPSADVPAAAGPEEPASKPSLSVAAATEAAAA
ARPSSEWRDAAPPPLSDEHQPASASPSNGWGEPAAGAGDEANAGKGKRGA
GQENHARAPRPEASSWGGPTNDNAVDKNERGAEAGVSGWGGASGGDDPGD
DAPRAATKSSGWGQGDGVAAPSPGWDQKDGAAAVP
back to top

mRNA from alignment at F-serratus_M_contig659:304678..305234+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig659.17561.1 ID=mRNA_F-serratus_M_contig659.17561.1|Name=mRNA_F-serratus_M_contig659.17561.1|organism=Fucus serratus male|type=mRNA|length=557bp|location=Sequence derived from alignment at F-serratus_M_contig659:304678..305234+ (Fucus serratus male)
AATTTTCAGCCGACCCCGCCACCTTGCCCACCTCCCCCCTTGAACGCCCC
TTCTCCCCCATCAGCAGACGTTCCCGCGGCTGCTGGGCCGGAGGAACCGG
CGTCCAAGCCTTCACTATCCGTCGCGGCTGCCACAGAAGCAGCAGCAGCA
GCCCGACCTTCTTCAGAGTGGAGGGACGCCGCGCCGCCGCCGCTTTCCGA
CGAGCACCAACCCGCGAGTGCCTCGCCGTCGAACGGATGGGGGGAACCGG
CAGCCGGAGCGGGAGATGAAGCTAACGCGGGAAAGGGAAAAAGAGGAGCG
GGACAGGAGAATCACGCGCGAGCACCACGCCCAGAAGCATCCAGCTGGGG
CGGACCCACGAACGATAATGCCGTAGACAAGAACGAGAGAGGTGCGGAAG
CTGGAGTCTCGGGATGGGGTGGGGCCTCGGGCGGCGACGATCCGGGCGAT
GATGCCCCCCGTGCCGCTACGAAGTCTTCCGGCTGGGGCCAGGGGGATGG
CGTGGCGGCTCCCTCTCCCGGTTGGGACCAGAAGGATGGCGCGGCGGCTG
TTCCCCG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig659:304678..305234+

>mRNA_F-serratus_M_contig659.17561.1 ID=mRNA_F-serratus_M_contig659.17561.1|Name=mRNA_F-serratus_M_contig659.17561.1|organism=Fucus serratus male|type=CDS|length=1110bp|location=Sequence derived from alignment at F-serratus_M_contig659:304678..305234+ (Fucus serratus male)
AATTTTCAGCCGACCCCGCCACCTTGCCCACCTCCCCCCTTGAACGCCCC
TTCTCCCCCATCAGCAGACGTTCCCGCGGCTGCTGGGCCGGAGGAACCGG
CGTCCAAGCCTTCACTATCCGTCGCGGCTGCCACAGAAGCAGCAGCAGCA
GCCCGACCTTCTTCAGAGTGGAGGGACGCCGCGCCGCCGCCGCTTTCCGA
CGAGCACCAACCCGCGAGTGCCTCGCCGTCGAACGGATGGGGGGAACCGG
CAGCCGGAGCGGGAGATGAAGCTAACGCGGGAAAGGGAAAAAGAGGAGCG
GGACAGGAGAATCACGCGCGAGCACCACGCCCAGAAGCATCCAGCTGGGG
CGGACCCACGAACGATAATGCCGTAGACAAGAACGAGAGAGGTGCGGAAG
CTGGAGTCTCGGGATGGGGTGGGGCCTCGGGCGGCGACGATCCGGGCGAT
GATGCCCCCCGTGCCGCTACGAAGTCTTCCGGCTGGGGCCAGGGGGATGG
CGTGGCGGCTCCCTCTCCCGGTTGGGACCAGAAGGATGGCGCGGCGGCTG
TTCCCAATTTTCAGCCGACCCCGCCACCTTGCCCACCTCCCCCCTTGAAC
GCCCCTTCTCCCCCATCAGCAGACGTTCCCGCGGCTGCTGGGCCGGAGGA
ACCGGCGTCCAAGCCTTCACTATCCGTCGCGGCTGCCACAGAAGCAGCAG
CAGCAGCCCGACCTTCTTCAGAGTGGAGGGACGCCGCGCCGCCGCCGCTT
TCCGACGAGCACCAACCCGCGAGTGCCTCGCCGTCGAACGGATGGGGGGA
ACCGGCAGCCGGAGCGGGAGATGAAGCTAACGCGGGAAAGGGAAAAAGAG
GAGCGGGACAGGAGAATCACGCGCGAGCACCACGCCCAGAAGCATCCAGC
TGGGGCGGACCCACGAACGATAATGCCGTAGACAAGAACGAGAGAGGTGC
GGAAGCTGGAGTCTCGGGATGGGGTGGGGCCTCGGGCGGCGACGATCCGG
GCGATGATGCCCCCCGTGCCGCTACGAAGTCTTCCGGCTGGGGCCAGGGG
GATGGCGTGGCGGCTCCCTCTCCCGGTTGGGACCAGAAGGATGGCGCGGC
GGCTGTTCCC
back to top