mRNA_F-serratus_M_contig6469.17411.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6469.17411.1
Unique NamemRNA_F-serratus_M_contig6469.17411.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig6469.17411.1 vs. uniprot
Match: D8LKG9_ECTSI (CxC4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG9_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 6.030e-12
Identity = 39/92 (42.39%), Postives = 54/92 (58.70%), Query Frame = 1 
Query:    4 FLCSRGDCRTVENLRSAATTGGDTDTALRPRCVHAQAVH----DTVELQLATPLLTGLEDVERALTRLPQEAFSLKIMEGIRTRARRAQEEG 267
            F+CSRG+CR VE LR+AA   GDT++AL  RC HA  V      +  +  AT  L G  + E AL  +P   F+ K++  ++ R  RA+EEG
Sbjct:  319 FMCSRGECRKVEQLRAAAGRQGDTNSALADRCQHADVVRKAEVSSQSIPTATACLNGDGEFENALASVPPGTFNEKMVRAMQQRYARAKEEG 410
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6469.17411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKG9_ECTSI6.030e-1242.39CxC4 domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6469contigF-serratus_M_contig6469:19949..20932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size271
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931995.1393688-CDS-F-serratus_M_contig6469:19948..199801622931995.1393688-CDS-F-serratus_M_contig6469:19948..19980Fucus serratus maleCDSF-serratus_M_contig6469 19949..19980 +
1690964093.8724833-CDS-F-serratus_M_contig6469:19948..199801690964093.8724833-CDS-F-serratus_M_contig6469:19948..19980Fucus serratus maleCDSF-serratus_M_contig6469 19949..19980 +
1622931995.1590016-CDS-F-serratus_M_contig6469:20695..209301622931995.1590016-CDS-F-serratus_M_contig6469:20695..20930Fucus serratus maleCDSF-serratus_M_contig6469 20696..20930 +
1690964093.8862934-CDS-F-serratus_M_contig6469:20695..209301690964093.8862934-CDS-F-serratus_M_contig6469:20695..20930Fucus serratus maleCDSF-serratus_M_contig6469 20696..20930 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6469.17411.1prot_F-serratus_M_contig6469.17411.1Fucus serratus malepolypeptideF-serratus_M_contig6469 19949..20930 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6469.17411.1

>prot_F-serratus_M_contig6469.17411.1 ID=prot_F-serratus_M_contig6469.17411.1|Name=mRNA_F-serratus_M_contig6469.17411.1|organism=Fucus serratus male|type=polypeptide|length=89bp
TFLCSRGDCRTVENLRSAATTGGDTDTALRPRCVHAQAVHDTVELQLATP
LLTGLEDVERALTRLPQEAFSLKIMEGIRTRARRAQEEG
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mRNA from alignment at F-serratus_M_contig6469:19949..20932+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6469.17411.1 ID=mRNA_F-serratus_M_contig6469.17411.1|Name=mRNA_F-serratus_M_contig6469.17411.1|organism=Fucus serratus male|type=mRNA|length=984bp|location=Sequence derived from alignment at F-serratus_M_contig6469:19949..20932+ (Fucus serratus male)
ACTTTTCTGTGCTCACGAGGAGACTGCAGAACGTGAGAACGTAACGTAGA
TGTGACATGACAGTGCGTTAGATCTGACGATGCCGTCAGCGTGACTCCGC
CTGAATCGCAAGTTATTTATCACGGTTTTTGCCGTAGTTCAAGGGGGGGG
TATGCGTGTAGGATTTTGTGGACCGCAAGCATTTTTTGTTAGCTTTGTGT
ATTGTCGTCCGTCGGACGATTTTAGTAAAAATTGTGGTACGCGCCCGGCC
CTGCTGTTACCCCCATCTGTCATTTTGTTTTTCTACGCGTAGTGTTGGGT
GTATGATCTTCATTCCTCATATCTCTCTCGTGTGAGATTGTTAATGTAGT
TTTTTCTCTATATACTATCTTGTCCGAGCGCTAGTCGACCTCCCTCCACA
GTGTAGGTTACGAAACAGGAGTCGTTGTTTTGTTCACCAAGGGTAAATAT
TGTATATTTCCGTAATATTATCCAGATTGCGTGCGCATTTTTTTCCCGTG
ACTGCCACGACTCCGGTTCTGCTCCCAGCGCCGTGTTTCGCGACGCATGA
ACTGAAGCCGTGAGCGCACTTGGGCCCTCCTTTTTGTTGTCGGATGTTGA
AAGAGTGGGGCACCACTGAACCAGTAGTACCAGTGTAGACTATCCATTGG
TAGAAATCGTAATAACATCCCCCACGAATGCTTCCGTTCATGTGTGCTAG
TCGTGTTAACGCTCCGCCACAAAATGCTCGCCGAACTTGTGTCGCAGAGT
GGAGAACCTTCGTTCGGCAGCGACCACCGGTGGTGACACGGACACTGCAC
TCCGACCCCGTTGCGTCCATGCACAGGCGGTGCATGACACGGTGGAGCTA
CAACTCGCGACCCCGTTGTTGACTGGTTTGGAGGATGTCGAACGTGCGTT
GACCAGACTGCCGCAAGAAGCCTTCAGCTTGAAAATCATGGAAGGCATCC
GCACACGCGCGCGTCGGGCGCAGGAAGAAGGCGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig6469:19949..20932+

>mRNA_F-serratus_M_contig6469.17411.1 ID=mRNA_F-serratus_M_contig6469.17411.1|Name=mRNA_F-serratus_M_contig6469.17411.1|organism=Fucus serratus male|type=CDS|length=534bp|location=Sequence derived from alignment at F-serratus_M_contig6469:19949..20932+ (Fucus serratus male)
ACTTTTCTGTGCTCACGAGGAGACTGCAGAACACTTTTCTGTGCTCACGA
GGAGACTGCAGAACAGTGGAGAACCTTCGTTCGGCAGCGACCACCGGTGG
TGACACGGACACTGCACTCCGACCCCGTTGCGTCCATGCACAGGCGGTGC
ATGACACGGTGGAGCTACAACTCGCGACCCCGTTGTTGACTGGTTTGGAG
GATGTCGAACGTGCGTTGACCAGACTGCCGCAAGAAGCCTTCAGCTTGAA
AATCATGGAAGGCATCCGCACACGCGCGCGTCGGGCGCAGGAAGAAGGCA
GTGGAGAACCTTCGTTCGGCAGCGACCACCGGTGGTGACACGGACACTGC
ACTCCGACCCCGTTGCGTCCATGCACAGGCGGTGCATGACACGGTGGAGC
TACAACTCGCGACCCCGTTGTTGACTGGTTTGGAGGATGTCGAACGTGCG
TTGACCAGACTGCCGCAAGAAGCCTTCAGCTTGAAAATCATGGAAGGCAT
CCGCACACGCGCGCGTCGGGCGCAGGAAGAAGGC
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