mRNA_F-serratus_M_contig642.17342.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig642.17342.1
Unique NamemRNA_F-serratus_M_contig642.17342.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig642.17342.1 vs. uniprot
Match: A0A6H5KG92_9PHAE (Rieske domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KG92_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.930e-8
Identity = 30/68 (44.12%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:   19 LSEKGLAVAFKSVR-GPWRDTSSFTPPALVEIGAEKPEDCTFQVVVYNIPTRPGWSRMITYQASIVPQ 219
            ++++G  V   S + G  +  ++F PPALVEI  E  +  T  +V YNIPTRPGWSRM   Q +I P+
Sbjct:  271 MTKEGFVVDNNSPQFGAKQGVATFVPPALVEIATELEDGKTISLVQYNIPTRPGWSRMFNRQLTITPE 338
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig642.17342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KG92_9PHAE1.930e-844.12Rieske domain-containing protein n=2 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig642contigF-serratus_M_contig642:24966..31304 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size241
Cds size240
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig642.17342.1prot_F-serratus_M_contig642.17342.1Fucus serratus malepolypeptideF-serratus_M_contig642 24966..31304 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931983.4130783-CDS-F-serratus_M_contig642:24965..249921622931983.4130783-CDS-F-serratus_M_contig642:24965..24992Fucus serratus maleCDSF-serratus_M_contig642 24966..24992 +
1690964088.6470308-CDS-F-serratus_M_contig642:24965..249921690964088.6470308-CDS-F-serratus_M_contig642:24965..24992Fucus serratus maleCDSF-serratus_M_contig642 24966..24992 +
1622931983.4255986-CDS-F-serratus_M_contig642:25485..255601622931983.4255986-CDS-F-serratus_M_contig642:25485..25560Fucus serratus maleCDSF-serratus_M_contig642 25486..25560 +
1690964088.661639-CDS-F-serratus_M_contig642:25485..255601690964088.661639-CDS-F-serratus_M_contig642:25485..25560Fucus serratus maleCDSF-serratus_M_contig642 25486..25560 +
1622931983.440224-CDS-F-serratus_M_contig642:30943..310421622931983.440224-CDS-F-serratus_M_contig642:30943..31042Fucus serratus maleCDSF-serratus_M_contig642 30944..31042 +
1690964088.6736338-CDS-F-serratus_M_contig642:30943..310421690964088.6736338-CDS-F-serratus_M_contig642:30943..31042Fucus serratus maleCDSF-serratus_M_contig642 30944..31042 +
1622931983.462512-CDS-F-serratus_M_contig642:31265..313041622931983.462512-CDS-F-serratus_M_contig642:31265..31304Fucus serratus maleCDSF-serratus_M_contig642 31266..31304 +
1690964088.6869268-CDS-F-serratus_M_contig642:31265..313041690964088.6869268-CDS-F-serratus_M_contig642:31265..31304Fucus serratus maleCDSF-serratus_M_contig642 31266..31304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig642.17342.1

>prot_F-serratus_M_contig642.17342.1 ID=prot_F-serratus_M_contig642.17342.1|Name=mRNA_F-serratus_M_contig642.17342.1|organism=Fucus serratus male|type=polypeptide|length=80bp
ELVDGVLSEKGLAVAFKSVRGPWRDTSSFTPPALVEIGAEKPEDCTFQVV
VYNIPTRPGWSRMITYQASIVPQDSIAKR*
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mRNA from alignment at F-serratus_M_contig642:24966..31304+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig642.17342.1 ID=mRNA_F-serratus_M_contig642.17342.1|Name=mRNA_F-serratus_M_contig642.17342.1|organism=Fucus serratus male|type=mRNA|length=6339bp|location=Sequence derived from alignment at F-serratus_M_contig642:24966..31304+ (Fucus serratus male)
GAGCTTGTCGACGGTGTCCTGAGCGAGGTACGGTACGGTTCGGTGCGGTA
TAAAATGACACTTGCCGGCAACTGATAAAATGTTTGTCGTGTACGTCTTC
GTTCGCCTTCAAGAGAGGCGCTGCTCGACGAATTGTTTTTACAATATATT
GCGGCGTTTTCTCTGGCGTTCTGTCGATGGGGCCGACCATTCAACCTATT
AGATTGCCAACCCGACGAACCTCAACGCCGCCCATCATCGAAGATATTTG
AGTTCGTTCACCCTCAGGTTCGAGCTCAAGTCGCCTGTACAACTGATCGG
GCGGGTTGCCAGTTGAACAACTGGCTTGGGTATTATATGGAGATCGTGGG
GGTATTTTACGAAGATGGCGGCGAATTTCGCTCCCTATATCCCCGCCTCC
CTTCCCCCCTTTTGAAATCGCTGCAAAGCCCACGATCAATCCCTCGTGTT
TCGAAAACCTCTGGGACTCACCCCTGACCGTCCCACATCTACCGATCTAT
CCCTGTGTGCGTTTCGGCAGAAAGGGTTAGCCGTGGCGTTCAAGTCAGTG
CGGGGCCCGTGGAGAGATACTAGCTCTTTTACCCCGCCCGCATTGGTAAG
CATAAACAAACGTACCTTTCATCTTCTGTCCTCCCCGAGGTACTCCCGCT
TTCTGGCCAGTGTGTGTTGCAGATACGGTACTGTATTCCAATAAAAGGAC
GTTCGGTATTGCACTCCAATCGAAATGACGTTCGGTGCTGTATTCCAACC
GAAAAGGCATTCGGTACGGTATTCCAATCGAAAGGACGTTCGGTTCTGTA
ATTCAATCGAAAGGACGTTCGATACGATATTCCATTCGAAAGGGCGTCCG
GTATTGCATTCCAATCGAAATGACGTTCGGTACTGGACTCTAATCGAAAA
GGCATGTGGTACGGTATTTCAAGCGAAAGGACGTTCGATACTGTATTCCA
ACCGAAAAGGCATTCGGTACGGTATTCCAATCGAAAGAACGTTCGGTACT
GTATTCCAATCGAAAGGACGTTCGATACGAGATTCCATTCGAAAGGACGT
CCGGTATTGTATTCCAATCGAAATGACGTTCGGTACTGTACTCTAATCGA
AAAGGCATTTGGTACGGTATTCCAACCAAAAAGACATCCGGTACGGTATT
CCATTCGAAAGGACGTACGGTACTGTACTCCAATCGAAAGGACGTTCGAA
ACGATGTTCCAATCGAAAGGACGTTCGGTACGGTATCCAATCGAAAGGAC
GTTCGGTACGGTATTCCAATCGAAAGGGTGTTCGGCACTGTACTCCAATC
GAAAGGACATTCGGTACTGTATTCCAATCAAAAGGGCGTTTGGTACAATC
AAAATAACATTCGGTACGATATTCCATTAGAAACGTCGTTCGGTACGGTA
TTCCAAGCGAAAGGACTTCAGTACTGTTTCCATTCGAAATGGCGTTTAGT
TTGGTACTTCAATCTAAAGGATGTTCGGTACGGTATTCCAATCGAAAGGA
AGTTGCCTACGAAGGATCACATTCAATTATGGATGTAAGATCGGGTTTCA
CAAGAAAACTCGGTCAGTACGTGGAGCCTCAAGCCTTTTGAGTTAGGGGT
AAGGGATGGCCGAGCCGGTTATTAACTGAACCACTGGGGCGACCGGTTCT
ACACACCAAGCGCCGAGCAGCTCGGCAGGAGTAAACCTTCGACGTCCTAG
CTATAGAGTTCTCGCACGAATCAATGTCCTTCATGACATCGATTGATGCG
GGAACTCGTCGATGCTGACAGTGCACGAGCCTGCCAACAGCATCGACAGG
CGATGATGCCCCCCAACAAAGCGAAATCGTTTCTCGCGGCACCCGTGCCT
GCGGTAGCAAAGTTGCGACACCGCCGCCGCGGAAAACATGGGACCCAAAG
CGAGGAGAGGAGGAATGCTCGGCGGCACACGCGAGTAAGCAGAAGTAGTG
TCGACGATGGAGAAGTTGAGGTATGGTGAGAGTGCCGTACCCAACACGCC
GGAAGAGCGAAGGCAAGGACCTGGGCAGAAAGCACCCGGAACTAAGTGAA
AAGCGGAAGGTATTTGCTCGTAAAAAGCGACGGGGGAAGCCGGCGGAGAG
AAAGTCCGCCCGCAAGGAACACAAGACCGCCAAGGCGAGATCTCGGCTAG
AGGAGCTCACGTTCGGTACATTCAACGTTCGCACAGCAGCGGTCAACGGC
GTCAACGGTATCGGCCACATAGACACCCTGCTGAGGACCTGTGCTGCACA
GGGTTGTGACGTCATCGGATTGCAGGAGACCAAAAGGGAAGAAACTTCCG
ATATTTCGGCATCTGGATACCCCGTCTTTTTTTAGTGGCGATTGTAGCAT
GGGGTTGGACTGGCGATAAAGGAGGAGATCGTTGAAAAGCTGGCGAGGAC
GGCATTACACAAGTGCATCAGCGCACGTCTCCTGAAAGCCCAAATTACAA
TTAAATCAAATTTCGTTACGTTCGGGGTAGCCTACGCCCCGACCGAGGAA
GCGCCAGAGGGGCAGAAGGCCAGATACGTGGCAGCCCTCAACTGCACCGT
AGCATCAGTGCCCGCTCGGGAATACGTCTTCCATTTAACAGACGCGAACG
CCAGGACAGGGAAGAAAGGTGAGGGCGGAGGAGAAGCAGACAGCAAAGTG
TTCGGCGCATATGGCCGAGACAAGCTCAACGAAAACGGCAACCTACTGGT
GGGTTTCGCATAAGACAGCAAGCTCGCTCTTCTGAACACTTTCTTTTGCA
CCCCCAAAAGTGGCGTGTCCTATACGTTCCAAAGCGCCAATCAATACAAG
AAACAAGCACGTTTGGATTACATCCTGACAAAGCAGGCGGATCGCCGACC
CATCCGCTGCGTCAATGTCCGCCGGCCGCCTCTAGAGGCACCATAATCGG
ATCACAATCTCGTGTACGCCAAAGTCCGCATCCCACGCAGGTCCGCACCA
AACCGGAAGAAGAGGGACAGAACCAAAGAAACTCCGAAGCTTGCCGACCT
TAGGCGGTTGATGATCGATCCGAACATTCGATTCCAAGTTGCGAACGCGA
TGGTTGACGAACTACAATCAATCCACGATGGCACCTGCATCAGTGACATC
GCCACCGATATGGCCGACGCAATGCTTTCCACTGCGGCCAAATTGGTACC
GCGCTCTAAGCGCCCACGCGGAGCACAGGGTTGGTGCGGGGGACCCAGTG
TGGAAGCTAACATGAACGCAGCATGGCAAGAGAGAGAGGAGGCGAGGAGG
CACCTACGCGCAGAACCCCACAAGAGCAACCTTCGGAAGGCCGCGAAGAC
GGCTGGACAAACCTTCGGAAGATGCGCAAGGCTGCCGTGCTGAGCTTCTT
TTGGGACTTCGTCCGCAAACTCGAAACACGCACTCGAGAAGGCGACCAGC
CGGCTTCTACAAGCACCTTAGGACGATGAACCTGGAAGAGGAGCGAGAAC
GCAGCTTGGAGTACGCCAAAGACGAAAACGGCGTCCTCCTGAGGGACGTT
GAACTCATCCGCGAACGATGGGTCCGGTGATTCCCCACTCTCCTCAACGC
CAAGTCACCGAGACTTGAACCGAACATCGCAGAAGGCCTTGACCGGTGGC
CCGAAAACATGCCTCCAGGAGTTCAGCCCACGGCAGGAGCTGACAGACGC
TATCCGCTCGTTAGCAAACGGAAAGGCTGTCGGACTGGAAGGAGTCTCCG
TCGAGCTGTTCAAGATCACTCTCAACGATGATCCTGCCCTGCGCAGGAGA
ATGCTCGATATCGTCGTTCGTATTTGGAGGGGGGGCGAGGTGCCGCAGCA
GTAGAAAGATGTTATCATCATGGTACTTCACAAAAAGAAGGATCGGACAG
ATTACGGCAAGTACAGGGGCATCGGGAATATACTGCTGAAGATCATCGCT
CGCCGCCTCAGCGAGTGCTGTGAGCGCGTGGGGATTCTGCCGGAATAACA
GAGTGGTTTCCGACCGAACCGTTCTACCACCGATATGATTGTGATTCGTC
GGTTACAGGAGCTGGCGCGAAAGAAACGAATTCTGCTTTATGTATGCTTT
ATCGACCTTACCAAAGCGTACGACTCCGTTGATCGAATCCTCCTCTGGAC
CGTACTCGCCCGTTTTGGCGTGCCACATATTATGATCTTGGTCATTCGTC
AATTCCACGATGGCATGCGAGCATGCGTGCGACTCGACGACAGGGTGTGG
TTGAGGTGGTTTGCTGTGAAACAAGGCCTCCGTCAAGGGTCTGTGCTCGC
ACCCATCCTGTTCAACATCTTCTTCGCGGCGGTTATAAACTTGGCCTCCG
CGTATTTTAAATCGGACAAAGGCATCATGGACGCTTTGGTACACCTGAGG
AATAAAGGGGGGCGGGGGGAAGCAACTGTCGGAGATTCAGTCCCCGTGAC
GCCGCTTTTGGGTATGCTTTACGCTGACGATGCCGGGGTCGTCTCGCAAT
CACTCGAGCCGTTGAGGGAGATGATGGGGGTGATCGTGGTCGTGTGAGCG
GCGTTTGGCCTCACCGTATCGGAGGCCAAGACTGAGATCATGTGTTTATG
CGCGAAGGGGATGCCGGAGTCCACCGCCACATTCAGCGTAGAGGCAGAGG
GCCAGGCATACATCCAGACGAACGAGTTTGTATACCTCGGGGGAAACGTC
AACCGACATGCCGCCTGTCTATCGAGGTCGACCGGCGCGTGCGCAACGCA
TGGTGCAGCTTCCGGAAGTACACCATCGAACTGTACGACCGACCGAGCGC
TCCTCTCGAGCTCAAAATCTGGATGCTAAGAGTCGCGAGGTATTGAAGTC
AATGCTGTACGGCTGCGTCACGTGGAGCCCGTGCACGTGCCACTACGACA
CGCTGCACCGAGCCTACCACAGATTCTTGACTCGCTGCATCGATTGGCGA
AAGCACAATCGCGCCGACCACCCGATTTCGTATCTGGACACGATTCTCAA
GACGGGAAGTGAGAGCATCGAGGCGATTTTACGCAGGAGGCGGATCTTGT
TTGCGGGTTTTGTGGCGCGCATGGAGGACACGAGACTGCCGAAGTGCGTG
ATGTTCGGAAAAATGATGGGGGGCGCGGGCTGTGTCGGGGGCCAGGAAAA
ATTGTGAATCCATGGGGTGTTTCCTGGACGATATCAGAGACCAGTGGACG
ACTGCAGCTCAGGACGAGGGGGAATGGCACAGAACGGCAGAACAAGGGGC
GGAACATTTCATGGCGAAATGGATCGTTGCCGAGAAAACCAAGGCTGGAC
TACGGCATGCAGTGATATGCCTGAACGTGACGGGAAGGACCAAGAGGAGG
ATAGCCCAAAGCAAGCGGGCACGTGCTGGTTCGCTCGCTCTTGTTGATTA
GCCACATGTGGCACGAACTTGTATCCCCCGGGCATATCGTTTGCAGACGT
CATGCCGTTTTTCTCTGGTGTTACGTTTGTTTTGTTTTGTTTTCCTTCGT
TTTCGTCTATATGCTTTCGTTGGAGCCGCGGCTCTTCGTTCAATCGTCCT
TCGATATGCAGGCATCCCGATAGCCACACGTGTTTCTTTCTTTTTCTTTT
TTCCTTTTTGTTTATTTGGAGATAGATGATGATGATGATGATGATGATGA
TGATGCCGCTTTTTCCGAGTATATATACAATATGTATATTATTTTTTTTG
GTACCATTTGTGCTTTCTTTGTATAGAGAATACGTCGTACGTTCTTTCCT
TCCGGATAGTGTTTTTCTACCTTGTGACCACGGGCTGGATTTTTGACATT
AGCATATGTGAGAATTTGATCAATCAAAGGTAACGATGGCGTCATCGATA
GCGCGAAAACAGTCCCAATCTATGAGATAACGCTCTTGTTACCAAATGGA
CTGCCTCCGCCCTTCCGCTGCAAGGGCAACTGCTTGAAATAGAGAAGTGA
CAGCAAACAGTACGTATACATTTAAAGTCATCACCGCTGTACGGCGACTG
TTCCCGTCTAATTTGCCGCTCTGCACAGGTGGAGATTGGAGCCGAAAAAC
CCGAGGACTGCACGTTTCAAGTGGTTGTGTACAATATTCCCACGCGACCG
GGTTGGAGCCGCATGATCACCTATCAGGTACTTCGTTTTGTCTCTCTTCT
CATGCGGCGTCGCGTGAGCTCCTACCGTACGAGTGGTGATATCCATTGAG
GCGCGTACCGTATGTACCCCGTGTTGCATCCATCAGCATTGCTCGACGAA
AACATAATCCTTCTTGTTTTTGATTTCCGTTTACAGTCGTTTCTCGGTAA
AATAAATATCGGTTACTGTGCAATGGCATACCTCACGCAACCGGTTTCAG
GCGAGCATCGTGCCACAAGATTCGATCGCCAAGCGGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig642:24966..31304+

>mRNA_F-serratus_M_contig642.17342.1 ID=mRNA_F-serratus_M_contig642.17342.1|Name=mRNA_F-serratus_M_contig642.17342.1|organism=Fucus serratus male|type=CDS|length=480bp|location=Sequence derived from alignment at F-serratus_M_contig642:24966..31304+ (Fucus serratus male)
GAGCTTGTCGACGGTGTCCTGAGCGAGGAGCTTGTCGACGGTGTCCTGAG
CGAGAAAGGGTTAGCCGTGGCGTTCAAGTCAGTGCGGGGCCCGTGGAGAG
ATACTAGCTCTTTTACCCCGCCCGCATTGAAAGGGTTAGCCGTGGCGTTC
AAGTCAGTGCGGGGCCCGTGGAGAGATACTAGCTCTTTTACCCCGCCCGC
ATTGGTGGAGATTGGAGCCGAAAAACCCGAGGACTGCACGTTTCAAGTGG
TTGTGTACAATATTCCCACGCGACCGGGTTGGAGCCGCATGATCACCTAT
CAGGTGGAGATTGGAGCCGAAAAACCCGAGGACTGCACGTTTCAAGTGGT
TGTGTACAATATTCCCACGCGACCGGGTTGGAGCCGCATGATCACCTATC
AGGCGAGCATCGTGCCACAAGATTCGATCGCCAAGCGGTGAGCGAGCATC
GTGCCACAAGATTCGATCGCCAAGCGGTGA
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