mRNA_F-serratus_M_contig642.17341.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig642.17341.1
Unique NamemRNA_F-serratus_M_contig642.17341.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig642.17341.1 vs. uniprot
Match: A0A6H5KED5_9PHAE (Rieske domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KED5_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 5.680e-19
Identity = 44/72 (61.11%), Postives = 48/72 (66.67%), Query Frame = 1
Query:    1 EAQPKACAKVYPTQVAQDIIWVWGENGPDAALESAMSLPAL-------HKLAPGKKALKNAVTQRDLPYGWD 195
            EA PKACAKVYPTQVAQDIIWVW ENGPDA LESA++ P L         LA G+  +   V   DL YGWD
Sbjct:  139 EANPKACAKVYPTQVAQDIIWVWAENGPDAGLESALTPPHLLPELDDEEGLASGR-VVPQGVQHTDLAYGWD 209          
BLAST of mRNA_F-serratus_M_contig642.17341.1 vs. uniprot
Match: A0A6H5KG92_9PHAE (Rieske domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KG92_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 9.720e-19
Identity = 39/71 (54.93%), Postives = 50/71 (70.42%), Query Frame = 1
Query:    1 EAQPKACAKVYPTQVAQDIIWVWGENGPDAALESAMSLPALHKLAPGKKALKNA------VTQRDLPYGWD 195
            E  P+ACAK+YPTQVAQD++WVWG+NGPDA L+S ++ PAL      KK +K+       VTQRDL Y W+
Sbjct:  162 ETNPRACAKLYPTQVAQDMVWVWGKNGPDAVLDSVLTKPALVSALEDKKGIKSGRVVPGVVTQRDLAYSWE 232          
BLAST of mRNA_F-serratus_M_contig642.17341.1 vs. uniprot
Match: D8LGA1_ECTSI (Rieske (2Fe-2S) region n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGA1_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.200e-18
Identity = 45/72 (62.50%), Postives = 49/72 (68.06%), Query Frame = 1
Query:    1 EAQPKACAKVYPTQVAQDIIWVWGENGPDAALESAMSLPAL-------HKLAPGKKALKNAVTQRDLPYGWD 195
            EAQPKACAKVYPTQVAQDIIWVW ENGPDA LESA++ P L         LA G+  +   V   DL YGWD
Sbjct:   98 EAQPKACAKVYPTQVAQDIIWVWAENGPDAGLESALTPPHLLPELDDEEGLASGR-VVPQGVQHTDLAYGWD 168          
BLAST of mRNA_F-serratus_M_contig642.17341.1 vs. uniprot
Match: A0A6H5KEF5_9PHAE (Rieske domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KEF5_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 5.630e-17
Identity = 43/72 (59.72%), Postives = 47/72 (65.28%), Query Frame = 1
Query:    1 EAQPKACAKVYPTQVAQDIIWVWGENGPDAALESAMSLPAL-------HKLAPGKKALKNAVTQRDLPYGWD 195
            EA PKACAKVYPTQVAQ IIWVW ENGPDA LESA++ P L         LA G+  +   V   DL YGWD
Sbjct:  161 EANPKACAKVYPTQVAQGIIWVWAENGPDAGLESALTPPHLIPELDDEEGLASGR-VVPQGVQHTDLAYGWD 231          
BLAST of mRNA_F-serratus_M_contig642.17341.1 vs. uniprot
Match: A0A6H5JY02_9PHAE (Rieske domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY02_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 2.040e-11
Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = 1
Query:    1 EAQPKACAKVYPTQVAQDIIWVWGENGPDAALESAMSLPALHKLAPGKKALKNA------VTQRDLPYGWD 195
            EAQPKACAKV     AQ ++WVWGENGPDA LESA++   L      K+ +++       V Q DL YGWD
Sbjct:  187 EAQPKACAKV-----AQGMVWVWGENGPDAGLESALTPAQLIPDLDDKEGIESGRVMLARVGQNDLAYGWD 252          
BLAST of mRNA_F-serratus_M_contig642.17341.1 vs. uniprot
Match: A0A2T1LW41_9CHRO ((2Fe-2S)-binding protein n=3 Tax=Chroococcales TaxID=1118 RepID=A0A2T1LW41_9CHRO)

HSP 1 Score: 65.1 bits (157), Expect = 9.650e-11
Identity = 33/66 (50.00%), Postives = 41/66 (62.12%), Query Frame = 1
Query:    4 AQPKACAKVYPTQVAQDIIWVWGENGPDAALESAMSLP-ALHKLAPGK-KALKNAVTQRDLPYGWD 195
            A  KACAKVYPTQ  Q ++WVWGE+G DA +ES    P  + +L     + +K     RDLPYGWD
Sbjct:  114 ANVKACAKVYPTQEQQGLLWVWGESGSDALIESQSRQPRTISELETNSDQVVKLFWNIRDLPYGWD 179          
BLAST of mRNA_F-serratus_M_contig642.17341.1 vs. uniprot
Match: A0A2K3DPA0_CHLRE (Rieske domain-containing protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DPA0_CHLRE)

HSP 1 Score: 63.9 bits (154), Expect = 2.480e-10
Identity = 32/70 (45.71%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    4 AQPKACAKVYPTQVAQDIIWVWGENGPDAALESAMSLPALHKLAPGKKALKNAVTQ------RDLPYGWD 195
            + P++CA+V+PTQ AQ ++WVWGE+GP AA +SA   PAL    P  + L ++  Q      RDLPY +D
Sbjct:  180 SSPRSCARVFPTQEAQGLLWVWGESGPSAAADSAGKGPAL---IPEMEELPSSRVQPLPWFFRDLPYSYD 246          
BLAST of mRNA_F-serratus_M_contig642.17341.1 vs. uniprot
Match: A0A835T6D1_CHLIN (Rieske domain-containing protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835T6D1_CHLIN)

HSP 1 Score: 62.8 bits (151), Expect = 6.330e-10
Identity = 33/68 (48.53%), Postives = 42/68 (61.76%), Query Frame = 1
Query:   10 PKACAKVYPTQVAQDIIWVWGENGPDAALESAMSLPALHKLAPGKKALKNAVTQ------RDLPYGWD 195
            P++CA+VYPTQ AQ ++WVWGE+GP AA  SA   PAL    P  + L  +  Q      RDLPY +D
Sbjct:  177 PRSCARVYPTQEAQGLLWVWGESGPAAAAASAAKGPAL---IPEMEELPASRVQALPWFFRDLPYSYD 241          
BLAST of mRNA_F-serratus_M_contig642.17341.1 vs. uniprot
Match: A0A835W191_9CHLO (Rieske domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835W191_9CHLO)

HSP 1 Score: 60.5 bits (145), Expect = 4.120e-9
Identity = 32/68 (47.06%), Postives = 42/68 (61.76%), Query Frame = 1
Query:   10 PKACAKVYPTQVAQDIIWVWGENGPDAALESAMSLPALHKLAPGKKALKNAVTQ------RDLPYGWD 195
            P++CA+VY TQ AQ ++WVWGE+GP AA +SA   PAL    P  + L  +  Q      RDLPY +D
Sbjct:  149 PRSCARVYLTQEAQGLLWVWGESGPTAAADSAAKGPAL---VPELEELPASRVQALPWFFRDLPYSYD 213          
BLAST of mRNA_F-serratus_M_contig642.17341.1 vs. uniprot
Match: A0A1Y5I4U6_OSTTA (Cell death suppressor protein n=1 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5I4U6_OSTTA)

HSP 1 Score: 60.1 bits (144), Expect = 5.670e-9
Identity = 29/73 (39.73%), Postives = 44/73 (60.27%), Query Frame = 1
Query:    1 EAQPKACAKVYPTQVAQDIIWVWGENGPDAALESAMS----LPALHKLAPGKKA----LKNAVTQRDLPYGWD 195
            +A  K+CA   P+ VAQ ++W WGE+GP+A +ESAM+    +P +  +    +A     +N    RDLPYGW+
Sbjct:  183 KANEKSCAFKRPSMVAQGLVWAWGESGPEAEMESAMTPPLLVPEIDGIGKSGRAACGGFRNHWQVRDLPYGWN 255          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig642.17341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5KED5_9PHAE5.680e-1961.11Rieske domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KG92_9PHAE9.720e-1954.93Rieske domain-containing protein n=2 Tax=Ectocarpu... [more]
D8LGA1_ECTSI1.200e-1862.50Rieske (2Fe-2S) region n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5KEF5_9PHAE5.630e-1759.72Rieske domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A6H5JY02_9PHAE2.040e-1150.70Rieske domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A2T1LW41_9CHRO9.650e-1150.00(2Fe-2S)-binding protein n=3 Tax=Chroococcales Tax... [more]
A0A2K3DPA0_CHLRE2.480e-1045.71Rieske domain-containing protein n=1 Tax=Chlamydom... [more]
A0A835T6D1_CHLIN6.330e-1048.53Rieske domain-containing protein n=1 Tax=Chlamydom... [more]
A0A835W191_9CHLO4.120e-947.06Rieske domain-containing protein n=1 Tax=Chlamydom... [more]
A0A1Y5I4U6_OSTTA5.670e-939.73Cell death suppressor protein n=1 Tax=Ostreococcus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig642contigF-serratus_M_contig642:23777..24128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue7.7e-15
Seed eggNOG ortholog2880.D8LGA0
KEGG rclassRC03394
KEGG koko:K13071
KEGG ReactionR08921
KEGG Pathwayko00860,ko01110,map00860,map01110
Hectar predicted targeting categoryother localisation
EggNOG free text desc.pheophorbide a oxygenase activity
EggNOG OGs2QQ8U@2759,COG4638@1
EC1.14.15.17
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size198
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931983.334301-CDS-F-serratus_M_contig642:23776..238181622931983.334301-CDS-F-serratus_M_contig642:23776..23818Fucus serratus maleCDSF-serratus_M_contig642 23777..23818 +
1690964088.622979-CDS-F-serratus_M_contig642:23776..238181690964088.622979-CDS-F-serratus_M_contig642:23776..23818Fucus serratus maleCDSF-serratus_M_contig642 23777..23818 +
1622931983.3577235-CDS-F-serratus_M_contig642:23973..241261622931983.3577235-CDS-F-serratus_M_contig642:23973..24126Fucus serratus maleCDSF-serratus_M_contig642 23974..24126 +
1690964088.6344168-CDS-F-serratus_M_contig642:23973..241261690964088.6344168-CDS-F-serratus_M_contig642:23973..24126Fucus serratus maleCDSF-serratus_M_contig642 23974..24126 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig642.17341.1prot_F-serratus_M_contig642.17341.1Fucus serratus malepolypeptideF-serratus_M_contig642 23777..24126 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig642.17341.1

>prot_F-serratus_M_contig642.17341.1 ID=prot_F-serratus_M_contig642.17341.1|Name=mRNA_F-serratus_M_contig642.17341.1|organism=Fucus serratus male|type=polypeptide|length=65bp
EAQPKACAKVYPTQVAQDIIWVWGENGPDAALESAMSLPALHKLAPGKKA
LKNAVTQRDLPYGWD
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mRNA from alignment at F-serratus_M_contig642:23777..24128+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig642.17341.1 ID=mRNA_F-serratus_M_contig642.17341.1|Name=mRNA_F-serratus_M_contig642.17341.1|organism=Fucus serratus male|type=mRNA|length=352bp|location=Sequence derived from alignment at F-serratus_M_contig642:23777..24128+ (Fucus serratus male)
GAGGCTCAACCCAAGGCGTGCGCCAAGGTTTATCCCACCCAGGTACTGCT GTATCAGTGGCGCGTGAAATCCAGTGAGAGAGAACTTTGCGGGACTTTAG TATATTACATTACGGAGTTTTTGCATTCAACAGCGTCTATCTCGGATACT GCCGTTGTTTTCCCAAGTTAGTGAGCGCTTGACTTTCGGTGTTACAGGTG GCTCAAGACATCATCTGGGTCTGGGGCGAAAATGGTCCCGATGCGGCACT CGAAAGTGCCATGTCCTTGCCTGCTCTCCATAAGTTGGCTCCGGGGAAGA AAGCGCTAAAAAACGCCGTAACGCAGAGGGACTTGCCTTATGGCTGGGAT AC
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Coding sequence (CDS) from alignment at F-serratus_M_contig642:23777..24128+

>mRNA_F-serratus_M_contig642.17341.1 ID=mRNA_F-serratus_M_contig642.17341.1|Name=mRNA_F-serratus_M_contig642.17341.1|organism=Fucus serratus male|type=CDS|length=390bp|location=Sequence derived from alignment at F-serratus_M_contig642:23777..24128+ (Fucus serratus male)
GAGGCTCAACCCAAGGCGTGCGCCAAGGTTTATCCCACCCAGGAGGCTCA
ACCCAAGGCGTGCGCCAAGGTTTATCCCACCCAGGTGGCTCAAGACATCA
TCTGGGTCTGGGGCGAAAATGGTCCCGATGCGGCACTCGAAAGTGCCATG
TCCTTGCCTGCTCTCCATAAGTTGGCTCCGGGGAAGAAAGCGCTAAAAAA
CGCCGTAACGCAGAGGGACTTGCCTTATGGCTGGGATGTGGCTCAAGACA
TCATCTGGGTCTGGGGCGAAAATGGTCCCGATGCGGCACTCGAAAGTGCC
ATGTCCTTGCCTGCTCTCCATAAGTTGGCTCCGGGGAAGAAAGCGCTAAA
AAACGCCGTAACGCAGAGGGACTTGCCTTATGGCTGGGAT
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