mRNA_F-serratus_M_contig640.17324.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig640.17324.1
Unique NamemRNA_F-serratus_M_contig640.17324.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig640.17324.1 vs. uniprot
Match: D7FY98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY98_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 5.520e-16
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:  133 RLGRLGMIMKEKYTPILLSAKGKTLVFMGTAGLFATGIYGATQAKLGFDVIDLAPDDHFA 312
            ++  +G  MKEKY+P +LSAKGK LV +G+AGL A GIYG TQA  GFD +DLAPD H++
Sbjct:  485 QISSIGRFMKEKYSPFVLSAKGKALVLLGSAGLLAAGIYGVTQATQGFDALDLAPDGHYS 544
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BLAST of mRNA_F-serratus_M_contig640.17324.1 vs. uniprot
Match: D7FY88_ECTSI (SSD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY88_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.400e-15
Identity = 39/65 (60.00%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:  121 EPDMR-LGRLGMIMKEKYTPILLSAKGKTLVFMGTAGLFATGIYGATQAKLGFDVIDLAPDDHFA 312
            E D+R L  +G +MK+KY P +LSAKGK LV + +AGL A GIYG TQA  G DV+DLAPD HF+
Sbjct:  454 EADVRQLSTIGRLMKDKYAPFVLSAKGKALVLLASAGLLAAGIYGVTQATQGLDVLDLAPDGHFS 518
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BLAST of mRNA_F-serratus_M_contig640.17324.1 vs. uniprot
Match: D8LCK9_ECTSI (Similar to Patched domain-containing protein 3, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK9_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.920e-15
Identity = 37/62 (59.68%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:  130 MRLGRLGMIMKEKYTPILLSAKGKTLVFMGTAGLFATGIYGATQAKLGFDVIDLAPDDHFAR 315
            M++   G  M+EKYTP +LS KGK LV +G+A +FA G+YG TQA  GFDVIDLAPD H A+
Sbjct:  475 MQITPFGRFMREKYTPFILSTKGKALVLVGSACIFAAGVYGVTQATEGFDVIDLAPDTHHAQ 536
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BLAST of mRNA_F-serratus_M_contig640.17324.1 vs. uniprot
Match: D7FY89_ECTSI (Novel protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY89_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 4.890e-15
Identity = 36/60 (60.00%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:  133 RLGRLGMIMKEKYTPILLSAKGKTLVFMGTAGLFATGIYGATQAKLGFDVIDLAPDDHFA 312
            +L  +G  MK+KY+P LLSAKGK +V +G+A L A GIYG TQA  GFDV+DLAPD H++
Sbjct:  508 QLSPIGRFMKDKYSPSLLSAKGKIVVLLGSAALLAAGIYGVTQATQGFDVLDLAPDGHYS 567
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BLAST of mRNA_F-serratus_M_contig640.17324.1 vs. uniprot
Match: D7FY95_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY95_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 9.130e-15
Identity = 35/60 (58.33%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:  133 RLGRLGMIMKEKYTPILLSAKGKTLVFMGTAGLFATGIYGATQAKLGFDVIDLAPDDHFA 312
            ++  +G  MK+K +P +LSAKGK LV +G+AGL A GIYG TQA  GFDV+DLAPD H++
Sbjct:  536 QISPMGRFMKDKCSPFVLSAKGKALVLLGSAGLLAAGIYGVTQATQGFDVLDLAPDGHYS 595
[Close]
BLAST of mRNA_F-serratus_M_contig640.17324.1 vs. uniprot
Match: D8LCK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK4_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 2.770e-13
Identity = 33/61 (54.10%), Postives = 45/61 (73.77%), Query Frame = 1 
Query:  136 LGRLGMIMKEKYTPILLSAKGKTLVFMGTAGLFATGIYGATQAKLGFDVIDLAPDDHFARD 318
            L + G  +KE ++P +LS+ GK +V + +A L  +GIYG TQA  GFDV+DLAPDDH+ARD
Sbjct:  399 LSKFGRFVKETFSPCILSSTGKAVVLLCSAWLLTSGIYGVTQATQGFDVLDLAPDDHYARD 459
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig640.17324.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FY98_ECTSI5.520e-1660.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FY88_ECTSI1.400e-1560.00SSD domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LCK9_ECTSI1.920e-1559.68Similar to Patched domain-containing protein 3, pa... [more]
D7FY89_ECTSI4.890e-1560.00Novel protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
D7FY95_ECTSI9.130e-1558.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCK4_ECTSI2.770e-1354.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig640contigF-serratus_M_contig640:57371..58160 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.4
Seed ortholog evalue1.4e-13
Seed eggNOG ortholog2880.D7FY98
KEGG koko:K07752
Hectar predicted targeting categoryother localisation
EggNOG free text desc.molting cycle, collagen and cuticulin-based cuticle
EggNOG OGsKOG1934@1,KOG1934@2759
EC3.4.17.22
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Exons3
Model size319
Cds size318
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig640.17324.1prot_F-serratus_M_contig640.17324.1Fucus serratus malepolypeptideF-serratus_M_contig640 57371..58160 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931979.9775288-CDS-F-serratus_M_contig640:57370..574271622931979.9775288-CDS-F-serratus_M_contig640:57370..57427Fucus serratus maleCDSF-serratus_M_contig640 57371..57427 -
1690964086.9017847-CDS-F-serratus_M_contig640:57370..574271690964086.9017847-CDS-F-serratus_M_contig640:57370..57427Fucus serratus maleCDSF-serratus_M_contig640 57371..57427 -
1622931980.0047252-CDS-F-serratus_M_contig640:57597..577061622931980.0047252-CDS-F-serratus_M_contig640:57597..57706Fucus serratus maleCDSF-serratus_M_contig640 57598..57706 -
1690964086.9213276-CDS-F-serratus_M_contig640:57597..577061690964086.9213276-CDS-F-serratus_M_contig640:57597..57706Fucus serratus maleCDSF-serratus_M_contig640 57598..57706 -
1622931980.0659072-CDS-F-serratus_M_contig640:58008..581601622931980.0659072-CDS-F-serratus_M_contig640:58008..58160Fucus serratus maleCDSF-serratus_M_contig640 58009..58160 -
1690964086.932134-CDS-F-serratus_M_contig640:58008..581601690964086.932134-CDS-F-serratus_M_contig640:58008..58160Fucus serratus maleCDSF-serratus_M_contig640 58009..58160 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig640.17324.1

>prot_F-serratus_M_contig640.17324.1 ID=prot_F-serratus_M_contig640.17324.1|Name=mRNA_F-serratus_M_contig640.17324.1|organism=Fucus serratus male|type=polypeptide|length=106bp
MRSDAIPGTTVDSLEASDRNATTTIVPAASAFAGSPSTSSEPDMRLGRLG
MIMKEKYTPILLSAKGKTLVFMGTAGLFATGIYGATQAKLGFDVIDLAPD
DHFARD
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mRNA from alignment at F-serratus_M_contig640:57371..58160-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig640.17324.1 ID=mRNA_F-serratus_M_contig640.17324.1|Name=mRNA_F-serratus_M_contig640.17324.1|organism=Fucus serratus male|type=mRNA|length=790bp|location=Sequence derived from alignment at F-serratus_M_contig640:57371..58160- (Fucus serratus male)
ATGAGGAGTGACGCCATCCCTGGAACGACCGTGGACTCTCTCGAAGCCAG
CGACCGGAACGCGACTACAACCATCGTTCCCGCTGCCTCTGCATTTGCTG
GTAGTCCATCTACTTCCAGTGAACCAGACATGAGACTCGGACGCCTTGGA
ATGTGAGAGGCGGGTATCGTTATCGAGGCAGCTGATTTTACCTAAACCAG
GCTAGTATCTAGTCCGTTTTCCAAAGTAGTCGCCCATCTCTCTTCCAAAG
ACCTTTATAGCAGACGTTGGACGGGATTCTCTGGAGACGGTATTCAATCA
ATCGGGCAAAACGCTTTGCGAAACGTTCGCGTTTCAGTCTTAATATGGCG
AACAAGATGACGTCAAGTGTAGAGCTCTTCATTATACAGTTGTCCTTACC
TTTCCGATTCCCTTCTGCGCTGGGCGGGTGGGTCGTTTTACATGGGTGCA
ACAGGATCATGAAGGAAAAATACACCCCGATTCTCCTTTCTGCCAAAGGC
AAGACACTGGTGTTCATGGGAACCGCCGGTCTGTTTGCCACCGGGATCTA
CGGTGCCACTCAGGTAGAGCGGGAGGATTACACTGTTCTCTGTTCTTGAG
ATAGCCGCGCCCGAATCGTACGCTAAAAAAAATGGTTCTACTCACTTGTC
CTTCATTCGAATAGACATTATTTTTCGTTTTCTAAGACGTTTTGTTCTCT
ACTTCTCTATGGTGCCATTACCTCTATGTGCAGGCAAAGCTAGGGTTTGA
CGTGATCGATTTAGCGCCGGATGATCACTTCGCCCGAGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig640:57371..58160-

>mRNA_F-serratus_M_contig640.17324.1 ID=mRNA_F-serratus_M_contig640.17324.1|Name=mRNA_F-serratus_M_contig640.17324.1|organism=Fucus serratus male|type=CDS|length=636bp|location=Sequence derived from alignment at F-serratus_M_contig640:57371..58160- (Fucus serratus male)
ATGAGGAGTGACGCCATCCCTGGAACGACCGTGGACTCTCTCGAAGCCAG
CGACCGGAACGCGACTACAACCATCGTTCCCGCTGCCTCTGCATTTGCTG
GTAGTCCATCTACTTCCAGTGAACCAGACATGAGACTCGGACGCCTTGGA
ATATGAGGAGTGACGCCATCCCTGGAACGACCGTGGACTCTCTCGAAGCC
AGCGACCGGAACGCGACTACAACCATCGTTCCCGCTGCCTCTGCATTTGC
TGGTAGTCCATCTACTTCCAGTGAACCAGACATGAGACTCGGACGCCTTG
GAATGATCATGAAGGAAAAATACACCCCGATTCTCCTTTCTGCCAAAGGC
AAGACACTGGTGTTCATGGGAACCGCCGGTCTGTTTGCCACCGGGATCTA
CGGTGCCACTCAGGATCATGAAGGAAAAATACACCCCGATTCTCCTTTCT
GCCAAAGGCAAGACACTGGTGTTCATGGGAACCGCCGGTCTGTTTGCCAC
CGGGATCTACGGTGCCACTCAGGCAAAGCTAGGGTTTGACGTGATCGATT
TAGCGCCGGATGATCACTTCGCCCGAGACGCAAAGCTAGGGTTTGACGTG
ATCGATTTAGCGCCGGATGATCACTTCGCCCGAGAC
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