mRNA_F-serratus_M_contig637.17276.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig637.17276.1
Unique NamemRNA_F-serratus_M_contig637.17276.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig637.17276.1 vs. uniprot
Match: A0A6H5JV09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV09_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 1.300e-27
Identity = 57/125 (45.60%), Postives = 76/125 (60.80%), Query Frame = 3 
Query:   81 GRKSPEAERYVASKWVRTCKGDEQGYCVKTKSRLVAKGFSQVAGVGYNETTSPTPAAAPVKMIAVFGNEKGLAMYHLDVSQAFVQAPLKEDTILRLPPGCGERYGKLVRLLSGQYSLKQAGREWY 455
            GR        +++KWV + KGDE GY V+ K+RLVA+GF+Q  GV + ET SP P+   ++++A         + H D  QAFVQ+ L E   +RLPPGCG   GK+VRL  G Y LKQA R W+
Sbjct:  814 GRDKARGTNVISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRGLYGLKQASRTWH 938
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BLAST of mRNA_F-serratus_M_contig637.17276.1 vs. uniprot
Match: A0A6H5L4A4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A4_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 2.590e-26
Identity = 52/120 (43.33%), Postives = 76/120 (63.33%), Query Frame = 3 
Query:   93 PEAERYVASKWVRTCKGDEQGYCVKTKSRLVAKGFSQVAGVGYNETTSPTPAAAPVKMIAVFGNEKGLAMYHLDVSQAFVQAPLKEDTILRLPPGCGERYGKLVRLLSGQYSLKQAGREW 452
            PE  + + SKWV + K +E+G  V  KSR++A+GFSQ+ G+ ++ + S  P+AA +K +     E G  + H DV QA++ A LKE+T LR P G G   GK+V++    Y LKQ+GREW
Sbjct:   21 PEGRKAIGSKWVFSWKTNEKGLIVDFKSRMIARGFSQIPGIDFHHSFSACPSAASIKTVIAVATEMGKKLAHWDVKQAYIHAKLKEETCLRFPEGYGNMSGKVVKVERALYGLKQSGREW 140
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BLAST of mRNA_F-serratus_M_contig637.17276.1 vs. uniprot
Match: A0A6H5KM90_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM90_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 6.400e-26
Identity = 53/115 (46.09%), Postives = 72/115 (62.61%), Query Frame = 3 
Query:  111 VASKWVRTCKGDEQGYCVKTKSRLVAKGFSQVAGVGYNETTSPTPAAAPVKMIAVFGNEKGLAMYHLDVSQAFVQAPLKEDTILRLPPGCGERYGKLVRLLSGQYSLKQAGREWY 455
            +++KWV + KGDE GY V+ K+RLVA+GF+Q  GV + ET SP P+   ++++A         + H D  QAFVQ+ L E   +RL PGCG   GK+VRL    Y LKQA R W+
Sbjct:  163 ISAKWVYSRKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLHPGCGALSGKVVRLRRSLYGLKQASRTWH 277
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BLAST of mRNA_F-serratus_M_contig637.17276.1 vs. uniprot
Match: A0A6H5KBJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBJ6_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 1.670e-24
Identity = 53/115 (46.09%), Postives = 72/115 (62.61%), Query Frame = 3 
Query:  111 VASKWVRTCKGDEQGYCVKTKSRLVAKGFSQVAGVGYNETTSPTPAAAPVKMIAVFGNEKGLAMYHLDVSQAFVQAPLKEDTILRLPPGCGERYGKLVRLLSGQYSLKQAGREWY 455
            +++KWV + KGDE GY V+ K+RLVA+GF+Q  GV + ET SP P+   ++++A         +   D  QAFVQ+ L E   +RLPPGCG   GK+VRL    Y LKQA R W+
Sbjct: 1291 ISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCPFDAQQAFVQSELDEIVFIRLPPGCGALSGKVVRLRRSLYGLKQASRTWH 1405
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BLAST of mRNA_F-serratus_M_contig637.17276.1 vs. uniprot
Match: A0A6H5KAC2_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAC2_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 2.300e-24
Identity = 53/115 (46.09%), Postives = 71/115 (61.74%), Query Frame = 3 
Query:  111 VASKWVRTCKGDEQGYCVKTKSRLVAKGFSQVAGVGYNETTSPTPAAAPVKMIAVFGNEKGLAMYHLDVSQAFVQAPLKEDTILRLPPGCGERYGKLVRLLSGQYSLKQAGREWY 455
            +++KWV + KGDE GY V+ K+RLVA+GF+Q  GV + ET SP P+   ++++A           H    QAFVQ+ L E   +RLPP CG R GK+VRL    Y LKQA R W+
Sbjct: 1410 ISAKWVYSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDSCHFYAEQAFVQSELDEVVFIRLPPACGARSGKVVRLRRSLYGLKQASRTWH 1524
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BLAST of mRNA_F-serratus_M_contig637.17276.1 vs. uniprot
Match: A0A6H5KHN5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN5_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.100e-23
Identity = 49/120 (40.83%), Postives = 74/120 (61.67%), Query Frame = 3 
Query:   93 PEAERYVASKWVRTCKGDEQGYCVKTKSRLVAKGFSQVAGVGYNETTSPTPAAAPVKMIAVFGNEKGLAMYHLDVSQAFVQAPLKEDTILRLPPGCGERYGKLVRLLSGQYSLKQAGREW 452
            PE  + +++KW+ + K +E+G  V  K+R+VA+GFSQ+ GV ++ ++S  P+A  +K +     E G    H D+ QA+  A LKE+  LRLP GCG   GK V++    Y  KQ+GREW
Sbjct: 1024 PEGRKAISAKWIFSHKTNEKGLIVDFKARMVARGFSQILGVDFHNSSSECPSAVSIKTMVAVSTENGRRPVHWDIKQAYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGHKQSGREW 1143
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BLAST of mRNA_F-serratus_M_contig637.17276.1 vs. uniprot
Match: A0A6H5KEU9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU9_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 3.520e-23
Identity = 51/123 (41.46%), Postives = 72/123 (58.54%), Query Frame = 3 
Query:   87 KSPEAERYVASKWVRTCKGDEQGYCVKTKSRLVAKGFSQVAGVGYNETTSPTPAAAPVKMIAVFGNEKGLAMYHLDVSQAFVQAPLKEDTILRLPPGCGERYGKLVRLLSGQYSLKQAGREWY 455
            K    +  + SK +   K D  G+  K K+RLVA+G  Q   + + +  +P  A++ V+M+A    E  L + H D+ QAFV+AP KEDT +RLP GCG   GK+V+L    Y L+QA REWY
Sbjct:  139 KRERIDNCIKSKLIFDWKVDAFGFPTKAKARLVARGDMQKEYIDFGDLYAPNVASSSVRMLAALACELDLELCHFDIDQAFVRAPFKEDTFMRLPEGCGALSGKIVQLNKSLYGLRQASREWY 261
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BLAST of mRNA_F-serratus_M_contig637.17276.1 vs. uniprot
Match: A0A6H5JVD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVD9_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 3.700e-23
Identity = 51/114 (44.74%), Postives = 70/114 (61.40%), Query Frame = 3 
Query:  111 VASKWVRTCKGDEQGYCVKTKSRLVAKGFSQVAGVGYNETTSPTPAAAPVKMIAVFGNEKGLAMYHLDVSQAFVQAPLKEDTILRLPPGCGERYGKLVRLLSGQYSLKQAGREW 452
            +++KWV + KGDE GY V+ K+RLVA+GF+Q   V + ET SP P+   ++++A         + H D  QAFVQ+ L E   +RLPPGCG   GK+VRL    + LKQ  R W
Sbjct: 1524 ISAKWVYSWKGDEFGYAVRAKARLVARGFAQREVVDFVETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLFGLKQPSRTW 1637
[Close]
BLAST of mRNA_F-serratus_M_contig637.17276.1 vs. uniprot
Match: A0A6H5K0K7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K7_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.620e-22
Identity = 50/105 (47.62%), Postives = 65/105 (61.90%), Query Frame = 3 
Query:  141 GDEQGYCVKTKSRLVAKGFSQVAGVGYNETTSPTPAAAPVKMIAVFGNEKGLAMYHLDVSQAFVQAPLKEDTILRLPPGCGERYGKLVRLLSGQYSLKQAGREWY 455
            GDE GY V+ K+RLVA+GF+Q  GV + ET SP P+   ++++A         + H D  QAFVQ+ L E   +RLPPGCG   GK+VRL    Y LKQA R W+
Sbjct:  357 GDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQASRTWH 461
[Close]
BLAST of mRNA_F-serratus_M_contig637.17276.1 vs. uniprot
Match: A0A6H5KGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK7_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.630e-22
Identity = 50/105 (47.62%), Postives = 65/105 (61.90%), Query Frame = 3 
Query:  141 GDEQGYCVKTKSRLVAKGFSQVAGVGYNETTSPTPAAAPVKMIAVFGNEKGLAMYHLDVSQAFVQAPLKEDTILRLPPGCGERYGKLVRLLSGQYSLKQAGREWY 455
            GDE GY V+ K+RLVA+GF+Q  GV + ET SP P+   ++++A         + H D  QAFVQ+ L E   +RLPPGCG   GK+VRL    Y LKQA R W+
Sbjct:  344 GDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQASRTWH 448
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig637.17276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JV09_9PHAE1.300e-2745.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4A4_9PHAE2.590e-2643.33Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KM90_9PHAE6.400e-2646.09Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBJ6_9PHAE1.670e-2446.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAC2_9PHAE2.300e-2446.09Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KHN5_9PHAE1.100e-2340.83CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KEU9_9PHAE3.520e-2341.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JVD9_9PHAE3.700e-2344.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0K7_9PHAE1.620e-2247.62Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGK7_9PHAE1.630e-2247.62Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig637contigF-serratus_M_contig637:305822..306286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size465
Cds size198
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig637.17276.1prot_F-serratus_M_contig637.17276.1Fucus serratus malepolypeptideF-serratus_M_contig637 306085..306282 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931970.0132174-UTR-F-serratus_M_contig637:305821..3060841622931970.0132174-UTR-F-serratus_M_contig637:305821..306084Fucus serratus maleUTRF-serratus_M_contig637 305822..306084 +
1690964082.0757246-UTR-F-serratus_M_contig637:305821..3060841690964082.0757246-UTR-F-serratus_M_contig637:305821..306084Fucus serratus maleUTRF-serratus_M_contig637 305822..306084 +
1622931970.2305226-UTR-F-serratus_M_contig637:306282..3062861622931970.2305226-UTR-F-serratus_M_contig637:306282..306286Fucus serratus maleUTRF-serratus_M_contig637 306283..306286 +
1690964082.1030254-UTR-F-serratus_M_contig637:306282..3062861690964082.1030254-UTR-F-serratus_M_contig637:306282..306286Fucus serratus maleUTRF-serratus_M_contig637 306283..306286 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931970.2154722-CDS-F-serratus_M_contig637:306084..3062821622931970.2154722-CDS-F-serratus_M_contig637:306084..306282Fucus serratus maleCDSF-serratus_M_contig637 306085..306282 +
1690964082.0908554-CDS-F-serratus_M_contig637:306084..3062821690964082.0908554-CDS-F-serratus_M_contig637:306084..306282Fucus serratus maleCDSF-serratus_M_contig637 306085..306282 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig637.17276.1

>prot_F-serratus_M_contig637.17276.1 ID=prot_F-serratus_M_contig637.17276.1|Name=mRNA_F-serratus_M_contig637.17276.1|organism=Fucus serratus male|type=polypeptide|length=66bp
MIAVFGNEKGLAMYHLDVSQAFVQAPLKEDTILRLPPGCGERYGKLVRLL
SGQYSLKQAGREWYM*
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mRNA from alignment at F-serratus_M_contig637:305822..306286+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig637.17276.1 ID=mRNA_F-serratus_M_contig637.17276.1|Name=mRNA_F-serratus_M_contig637.17276.1|organism=Fucus serratus male|type=mRNA|length=465bp|location=Sequence derived from alignment at F-serratus_M_contig637:305822..306286+ (Fucus serratus male)
CCTACGGAAAGCGTTTGAACTTTCGCAACGCGTCGAGATCAAGGGTGTCC
TCGACGTTGGGGGCTTTGCGCTTGTAGACGGGGAGAAAGTCCCCAGAGGC
CGAAAGATATGTCGCCTCAAAATGGGTACGCACGTGCAAAGGGGATGAGC
AAGGGTACTGTGTGAAGACGAAGTCTCGTTTAGTGGCGAAGGGTTTCAGC
CAAGTGGCAGGCGTCGGCTACAACGAAACAACTTCTCCGACGCCTGCTGC
GGCCCCAGTCAAGATGATAGCCGTATTTGGTAATGAGAAAGGCTTGGCGA
TGTACCATCTGGACGTGTCTCAGGCATTCGTGCAGGCCCCTCTGAAGGAA
GATACTATTTTGCGTCTTCCCCCGGGTTGTGGTGAACGCTACGGAAAACT
CGTGCGGCTTCTGAGCGGTCAGTACAGTCTCAAGCAGGCCGGTAGAGAGT
GGTACATGTAGTTGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig637:305822..306286+

>mRNA_F-serratus_M_contig637.17276.1 ID=mRNA_F-serratus_M_contig637.17276.1|Name=mRNA_F-serratus_M_contig637.17276.1|organism=Fucus serratus male|type=CDS|length=396bp|location=Sequence derived from alignment at F-serratus_M_contig637:305822..306286+ (Fucus serratus male)
ATGATAGCCGTATTTGGTAATGAGAAAGGCTTGGCGATGTACCATCTGGA
CGTGTCTCAGGCATTCGTGCAGGCCCCTCTGAAGGAAGATACTATTTTGC
GTCTTCCCCCGGGTTGTGGTGAACGCTACGGAAAACTCGTGCGGCTTCTG
AGCGGTCAGTACAGTCTCAAGCAGGCCGGTAGAGAGTGGTACATGTAGAT
GATAGCCGTATTTGGTAATGAGAAAGGCTTGGCGATGTACCATCTGGACG
TGTCTCAGGCATTCGTGCAGGCCCCTCTGAAGGAAGATACTATTTTGCGT
CTTCCCCCGGGTTGTGGTGAACGCTACGGAAAACTCGTGCGGCTTCTGAG
CGGTCAGTACAGTCTCAAGCAGGCCGGTAGAGAGTGGTACATGTAG
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