mRNA_F-serratus_M_contig636.17268.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig636.17268.1
Unique NamemRNA_F-serratus_M_contig636.17268.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig636.17268.1 vs. uniprot
Match: A0A8H7Q2E8_MORIS (UBA_e1_C domain-containing protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7Q2E8_MORIS)

HSP 1 Score: 63.2 bits (152), Expect = 2.990e-9
Identity = 29/38 (76.32%), Postives = 32/38 (84.21%), Query Frame = -1 
Query:    1 GEGTEGAIVVTDMDTIEKSNLNRQFLFRGADVGKAKSA 114
            G G EG ++VTDMDTIEKSNLNRQFLFR  DVG+ KSA
Sbjct:  449 GTGPEGRVIVTDMDTIEKSNLNRQFLFRSTDVGQLKSA 486
[Close]
BLAST of mRNA_F-serratus_M_contig636.17268.1 vs. uniprot
Match: A0A6H5KGH9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGH9_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 3.850e-9
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = -1 
Query:    4 DDGEGTEGAIVVTDMDTIEKSNLNRQFLFRGADVGKAKS 120
            D+ E + G I+VTDMDTIEKSNLNRQFLFR  DVGKAKS
Sbjct:  353 DEREESRGGIIVTDMDTIEKSNLNRQFLFRSRDVGKAKS 391
[Close]
BLAST of mRNA_F-serratus_M_contig636.17268.1 vs. uniprot
Match: A0A8H7SGG1_9FUNG (UBA_e1_C domain-containing protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7SGG1_9FUNG)

HSP 1 Score: 62.4 bits (150), Expect = 5.570e-9
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = -1 
Query:    4 GEGTEGAIVVTDMDTIEKSNLNRQFLFRGADVGKAKS 114
            G G EGA+ +TDMDTIEKSNLNRQFLFR ADVG+ KS
Sbjct:  448 GSGPEGALYITDMDTIEKSNLNRQFLFRPADVGQLKS 484
[Close]
BLAST of mRNA_F-serratus_M_contig636.17268.1 vs. uniprot
Match: A0A4S2MZW0_9PEZI (Putative poly(A) RNA transport protein n=1 Tax=Ascodesmis nigricans TaxID=341454 RepID=A0A4S2MZW0_9PEZI)

HSP 1 Score: 62.4 bits (150), Expect = 5.580e-9
Identity = 31/37 (83.78%), Postives = 31/37 (83.78%), Query Frame = -1 
Query:    4 GEGTEGAIVVTDMDTIEKSNLNRQFLFRGADVGKAKS 114
            G G EG I VTDMDTIEKSNLNRQFLFR ADVGK KS
Sbjct:  463 GAGPEGKISVTDMDTIEKSNLNRQFLFRPADVGKLKS 499
[Close]
BLAST of mRNA_F-serratus_M_contig636.17268.1 vs. uniprot
Match: A0A0J0XFU5_9TREE (Putative ubiquitin activating enzyme n=1 Tax=Cutaneotrichosporon oleaginosum TaxID=879819 RepID=A0A0J0XFU5_9TREE)

HSP 1 Score: 62.0 bits (149), Expect = 7.600e-9
Identity = 29/38 (76.32%), Postives = 33/38 (86.84%), Query Frame = -1 
Query:    1 GEGTEGAIVVTDMDTIEKSNLNRQFLFRGADVGKAKSA 114
            G G EG+IVVTD+DTIEKSNLNRQFLFR  DVG+ K+A
Sbjct:  456 GSGPEGSIVVTDLDTIEKSNLNRQFLFRAKDVGQFKAA 493
[Close]
BLAST of mRNA_F-serratus_M_contig636.17268.1 vs. uniprot
Match: A0A4P9XI55_9FUNG (E1 ubiquitin-activating enzyme n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XI55_9FUNG)

HSP 1 Score: 61.6 bits (148), Expect = 1.030e-8
Identity = 30/37 (81.08%), Postives = 31/37 (83.78%), Query Frame = -1 
Query:    4 GEGTEGAIVVTDMDTIEKSNLNRQFLFRGADVGKAKS 114
            G G +G I VTDMDTIEKSNLNRQFLFR ADVGK KS
Sbjct:  451 GTGEQGRIYVTDMDTIEKSNLNRQFLFRPADVGKLKS 487
[Close]
BLAST of mRNA_F-serratus_M_contig636.17268.1 vs. uniprot
Match: A0A317WRF1_9EURO (Ubiquitin-activating enzyme E1 n=1 Tax=Aspergillus heteromorphus CBS 117.55 TaxID=1448321 RepID=A0A317WRF1_9EURO)

HSP 1 Score: 61.6 bits (148), Expect = 1.060e-8
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = -1 
Query:    4 GEGTEGAIVVTDMDTIEKSNLNRQFLFRGADVGKAKS 114
            G G +G I+VTDMDTIEKSNLNRQFLFR  DVGK KS
Sbjct:  464 GAGPKGKIIVTDMDTIEKSNLNRQFLFRSRDVGKLKS 500
[Close]
BLAST of mRNA_F-serratus_M_contig636.17268.1 vs. uniprot
Match: A0A433QRD9_9FUNG (UBA_e1_C domain-containing protein (Fragment) n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QRD9_9FUNG)

HSP 1 Score: 61.2 bits (147), Expect = 1.380e-8
Identity = 30/37 (81.08%), Postives = 30/37 (81.08%), Query Frame = -1 
Query:    4 GEGTEGAIVVTDMDTIEKSNLNRQFLFRGADVGKAKS 114
            G G  G I VTDMDTIEKSNLNRQFLFR ADVGK KS
Sbjct:  138 GTGPRGRITVTDMDTIEKSNLNRQFLFRPADVGKLKS 174
[Close]
BLAST of mRNA_F-serratus_M_contig636.17268.1 vs. uniprot
Match: A0A1X2GZW9_SYNRA (Ubiquitin-activating emzyme E1 n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2GZW9_SYNRA)

HSP 1 Score: 61.2 bits (147), Expect = 1.410e-8
Identity = 28/37 (75.68%), Postives = 31/37 (83.78%), Query Frame = -1 
Query:    4 GEGTEGAIVVTDMDTIEKSNLNRQFLFRGADVGKAKS 114
            G G  G+I++TDMDTIEKSNLNRQFLFR  DVGK KS
Sbjct:  451 GAGPNGSIIITDMDTIEKSNLNRQFLFRPTDVGKLKS 487
[Close]
BLAST of mRNA_F-serratus_M_contig636.17268.1 vs. uniprot
Match: A0A2V3IUT3_9FLOR (Ubiquitin-like modifier-activating enzyme 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUT3_9FLOR)

HSP 1 Score: 60.8 bits (146), Expect = 1.900e-8
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = -1 
Query:    1 GEGTEGAIVVTDMDTIEKSNLNRQFLFRGADVGKAKSA 114
            G G +G I+VTDMDTIEKSNL+RQFLFR  D+GK+KS+
Sbjct:  228 GSGPKGEIIVTDMDTIEKSNLSRQFLFRDTDIGKSKSS 265
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig636.17268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8H7Q2E8_MORIS2.990e-976.32UBA_e1_C domain-containing protein n=1 Tax=Mortier... [more]
A0A6H5KGH9_9PHAE3.850e-976.92Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A8H7SGG1_9FUNG5.570e-978.38UBA_e1_C domain-containing protein n=1 Tax=Mucor c... [more]
A0A4S2MZW0_9PEZI5.580e-983.78Putative poly(A) RNA transport protein n=1 Tax=Asc... [more]
A0A0J0XFU5_9TREE7.600e-976.32Putative ubiquitin activating enzyme n=1 Tax=Cutan... [more]
A0A4P9XI55_9FUNG1.030e-881.08E1 ubiquitin-activating enzyme n=1 Tax=Thamnocepha... [more]
A0A317WRF1_9EURO1.060e-878.38Ubiquitin-activating enzyme E1 n=1 Tax=Aspergillus... [more]
A0A433QRD9_9FUNG1.380e-881.08UBA_e1_C domain-containing protein (Fragment) n=1 ... [more]
A0A1X2GZW9_SYNRA1.410e-875.68Ubiquitin-activating emzyme E1 n=1 Tax=Syncephalas... [more]
A0A2V3IUT3_9FLOR1.900e-871.05Ubiquitin-like modifier-activating enzyme 1 n=1 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig636contigF-serratus_M_contig636:298980..299319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size341
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931966.188601-CDS-F-serratus_M_contig636:298979..2993181622931966.188601-CDS-F-serratus_M_contig636:298979..299318Fucus serratus maleCDSF-serratus_M_contig636 298980..299318 +
1690964080.0264988-CDS-F-serratus_M_contig636:298979..2993181690964080.0264988-CDS-F-serratus_M_contig636:298979..299318Fucus serratus maleCDSF-serratus_M_contig636 298980..299318 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig636.17268.1prot_F-serratus_M_contig636.17268.1Fucus serratus malepolypeptideF-serratus_M_contig636 298980..299318 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig636.17268.1

>prot_F-serratus_M_contig636.17268.1 ID=prot_F-serratus_M_contig636.17268.1|Name=mRNA_F-serratus_M_contig636.17268.1|organism=Fucus serratus male|type=polypeptide|length=113bp
RAFSLSDVRPSEQKLSVQVALFYRVHIGDHDGSFRPLSVIARLSSSSSIG
SSISNSNKSIVSISSISTIVRRSTTTRRRIRCFLVRRSVAPLTPRLPKPP
RPSPPRKAAAPTA
back to top

mRNA from alignment at F-serratus_M_contig636:298980..299319+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig636.17268.1 ID=mRNA_F-serratus_M_contig636.17268.1|Name=mRNA_F-serratus_M_contig636.17268.1|organism=Fucus serratus male|type=mRNA|length=340bp|location=Sequence derived from alignment at F-serratus_M_contig636:298980..299319+ (Fucus serratus male)
CGCGCTTTTAGCCTTTCCGACGTCCGCCCCTCGGAACAAAAATTGTCGGT
TCAGGTTGCTCTTTTCTATCGTGTCCATATCGGTGACCACGATGGCTCCT
TCCGTCCCCTCTCCGTCATCGCTCGGCTCAGCAGCAGCAGCAGCATCGGC
AGCAGCATCAGCAACAGCAACAAGAGCATCGTCAGTATCAGTAGCATCAG
CACCATCGTCCGCAGGAGCACCACCACCAGAAGAAGGATCCGATGCTTCC
TTGTCCGCAGGAGCGTCGCGCCCCTTACCCCTCGTCTTCCAAAGCCTCCA
CGCCCGTCTCCGCCGCGGAAGGCCGCTGCCCCGACCGCTA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig636:298980..299319+

>mRNA_F-serratus_M_contig636.17268.1 ID=mRNA_F-serratus_M_contig636.17268.1|Name=mRNA_F-serratus_M_contig636.17268.1|organism=Fucus serratus male|type=CDS|length=678bp|location=Sequence derived from alignment at F-serratus_M_contig636:298980..299319+ (Fucus serratus male)
CGCGCTTTTAGCCTTTCCGACGTCCGCCCCTCGGAACAAAAATTGTCGGT
TCAGGTTGCTCTTTTCTATCGTGTCCATATCGGTGACCACGATGGCTCCT
TCCGTCCCCTCTCCGTCATCGCTCGGCTCAGCAGCAGCAGCAGCATCGGC
AGCAGCATCAGCAACAGCAACAAGAGCATCGTCAGTATCAGTAGCATCAG
CACCATCGTCCGCAGGAGCACCACCACCAGAAGAAGGATCCGATGCTTCC
TTGTCCGCAGGAGCGTCGCGCCCCTTACCCCTCGTCTTCCAAAGCCTCCA
CGCCCGTCTCCGCCGCGGAAGGCCGCTGCCCCGACCGCTCGCGCTTTTAG
CCTTTCCGACGTCCGCCCCTCGGAACAAAAATTGTCGGTTCAGGTTGCTC
TTTTCTATCGTGTCCATATCGGTGACCACGATGGCTCCTTCCGTCCCCTC
TCCGTCATCGCTCGGCTCAGCAGCAGCAGCAGCATCGGCAGCAGCATCAG
CAACAGCAACAAGAGCATCGTCAGTATCAGTAGCATCAGCACCATCGTCC
GCAGGAGCACCACCACCAGAAGAAGGATCCGATGCTTCCTTGTCCGCAGG
AGCGTCGCGCCCCTTACCCCTCGTCTTCCAAAGCCTCCACGCCCGTCTCC
GCCGCGGAAGGCCGCTGCCCCGACCGCT
back to top