mRNA_F-serratus_M_contig6352.17254.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig6352.17254.1
Unique NamemRNA_F-serratus_M_contig6352.17254.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6352.17254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig6352contigF-serratus_M_contig6352:3038..3332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size274
Cds size273
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig6352.17254.1prot_F-serratus_M_contig6352.17254.1Fucus serratus malepolypeptideF-serratus_M_contig6352 3038..3332 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931965.4544709-CDS-F-serratus_M_contig6352:3037..31461622931965.4544709-CDS-F-serratus_M_contig6352:3037..3146Fucus serratus maleCDSF-serratus_M_contig6352 3038..3146 +
1690964079.7567391-CDS-F-serratus_M_contig6352:3037..31461690964079.7567391-CDS-F-serratus_M_contig6352:3037..3146Fucus serratus maleCDSF-serratus_M_contig6352 3038..3146 +
1622931965.4941523-CDS-F-serratus_M_contig6352:3158..32211622931965.4941523-CDS-F-serratus_M_contig6352:3158..3221Fucus serratus maleCDSF-serratus_M_contig6352 3159..3221 +
1690964079.7665932-CDS-F-serratus_M_contig6352:3158..32211690964079.7665932-CDS-F-serratus_M_contig6352:3158..3221Fucus serratus maleCDSF-serratus_M_contig6352 3159..3221 +
1622931965.5146577-CDS-F-serratus_M_contig6352:3231..33321622931965.5146577-CDS-F-serratus_M_contig6352:3231..3332Fucus serratus maleCDSF-serratus_M_contig6352 3232..3332 +
1690964079.7757287-CDS-F-serratus_M_contig6352:3231..33321690964079.7757287-CDS-F-serratus_M_contig6352:3231..3332Fucus serratus maleCDSF-serratus_M_contig6352 3232..3332 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig6352.17254.1

>prot_F-serratus_M_contig6352.17254.1 ID=prot_F-serratus_M_contig6352.17254.1|Name=mRNA_F-serratus_M_contig6352.17254.1|organism=Fucus serratus male|type=polypeptide|length=91bp
MQYSTICPINRQSLHAPLPCQGALCQGFRQPGRYGDKKQNKNKIKIGSTR
GKRSGQTCMSKEASRGGKSRQKIMAHQQLFGRLIYLSPKPS
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mRNA from alignment at F-serratus_M_contig6352:3038..3332+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig6352.17254.1 ID=mRNA_F-serratus_M_contig6352.17254.1|Name=mRNA_F-serratus_M_contig6352.17254.1|organism=Fucus serratus male|type=mRNA|length=295bp|location=Sequence derived from alignment at F-serratus_M_contig6352:3038..3332+ (Fucus serratus male)
ATGCAATATAGTACCATATGTCCTATTAATAGACAGTCTCTCCACGCGCC
CCTACCTTGCCAGGGAGCTCTTTGTCAGGGTTTTCGCCAACCAGGCAGAT
ACGGGGATACCGATGGCGTTCAAAAACAAAACAAAAATAAAATCAAAATA
GGTTCAACTCGAGGCAAGCGGTCAGGGCAGACCTGTTTTACCAGGTATGA
GCAAAGAAGCCTCAAGAGGAGGCAAATCAAGGCAGAAAATTATGGCTCAC
CAGCAACTCTTTGGCCGCTTGATTTACCTCTCTCCGAAACCTTCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig6352:3038..3332+

>mRNA_F-serratus_M_contig6352.17254.1 ID=mRNA_F-serratus_M_contig6352.17254.1|Name=mRNA_F-serratus_M_contig6352.17254.1|organism=Fucus serratus male|type=CDS|length=546bp|location=Sequence derived from alignment at F-serratus_M_contig6352:3038..3332+ (Fucus serratus male)
ATGCAATATAGTACCATATGTCCTATTAATAGACAGTCTCTCCACGCGCC
CCTACCTTGCCAGGGAGCTCTTTGTCAGGGTTTTCGCCAACCAGGCAGAT
ACGGGGATAATGCAATATAGTACCATATGTCCTATTAATAGACAGTCTCT
CCACGCGCCCCTACCTTGCCAGGGAGCTCTTTGTCAGGGTTTTCGCCAAC
CAGGCAGATACGGGGATAAAAAACAAAACAAAAATAAAATCAAAATAGGT
TCAACTCGAGGCAAGCGGTCAGGGCAGACCTAAAAACAAAACAAAAATAA
AATCAAAATAGGTTCAACTCGAGGCAAGCGGTCAGGGCAGACCTGTATGA
GCAAAGAAGCCTCAAGAGGAGGCAAATCAAGGCAGAAAATTATGGCTCAC
CAGCAACTCTTTGGCCGCTTGATTTACCTCTCTCCGAAACCTTCCGTATG
AGCAAAGAAGCCTCAAGAGGAGGCAAATCAAGGCAGAAAATTATGGCTCA
CCAGCAACTCTTTGGCCGCTTGATTTACCTCTCTCCGAAACCTTCC
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