mRNA_F-serratus_M_contig1226.1724.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1226.1724.1 vs. uniprot
Match: D7FTU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU3_ECTSI) HSP 1 Score: 108 bits (269), Expect = 5.580e-23 Identity = 89/220 (40.45%), Postives = 115/220 (52.27%), Query Frame = 1
Query: 142 AVHGVARVLQEPVGHVSARDLLLYVGKRSQKIFAAYAAGSGTRSNAEGDIDGDDCRGSVSSWSSAAARSDCSTVGXXXXXXXXXXXRRHRAATGLCFPL--FRGNLVDSGGGGSGSVVRKMVLLAGLAEVMWRMPRASMGPRDGGTAILALRDL-ATDREREGNKSRR--FCYYFATFPGKD--APGPSPGPSLARVLRALVYCQLRRGLFREVLETTRV 780
AV+GVARVLQE H ++R+LLL++G+RSQ++ + GS SN G+ S+ S S+ +HR LCFPL R SGGG +VL AEVMWR+ RASM +D TAILAL L A + +G S R YYFA+F KD A GP ARVLRAL + Q++RGL+R+ LET R+
Sbjct: 532 AVYGVARVLQESGDHAASRELLLFLGERSQEL----SGGSSPSSN-----------GATSAVHQGRRSSSRSSS------------HQHR----LCFPLEATRQGFQPSGGGXXXXXGALVVLPVAPAEVMWRVARASMAAKDWPTAILALEGLVAAEATADGVASSREGLAYYFASF-AKDGGARASRRGPGRARVLRALAFSQIQRGLYRDALETVRM 719
BLAST of mRNA_F-serratus_M_contig1226.1724.1 vs. uniprot
Match: A0A6H5L1V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V4_9PHAE) HSP 1 Score: 100 bits (249), Expect = 2.600e-20 Identity = 89/227 (39.21%), Postives = 112/227 (49.34%), Query Frame = 1
Query: 142 AVHGVARVLQEPVGHVSARDLLLYVGKRSQKIFAAYAAGSGTRSNAEGDIDGDDCRGSVSSWSSAAARSDCSTVGXXXXXXXXXXXRRHRAATGLCFPLFRGNLVDSGGG-------------GSGSVVRKMVLLAGLAEVMWRMPRASMGPRDGGTAILALRDL-ATDREREGNKSRR--FCYYFATFP-GKDAPGPSPGPSLARVLRALVYCQLRRGLFREVLET 771
AV+GVARVLQE H ++R+LLL++G+RSQ++ + GS SN G+ S+ S S+ +HR LCFPL GG SG++ VL LAEVMWR+ RASM RD TAILAL L A + G S R YYFA+F G A GP ARVLRAL Y Q++RGL+R+ LET
Sbjct: 548 AVYGVARVLQESGDHAASRELLLFLGERSQEL----SGGSLPSSN-----------GATSAVHQGRRNSSRSSS------------HQHR----LCFPLEARRQGFQPGGXXXXXXXXXXXXXASGALT---VLPVALAEVMWRVARASMAARDWPTAILALEGLVAAEATAGGEASPREGLAYYFASFAKGGGARASRRGPGRARVLRALAYSQIQRGLYRDALET 740
BLAST of mRNA_F-serratus_M_contig1226.1724.1 vs. uniprot
Match: D8LD88_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD88_ECTSI) HSP 1 Score: 97.1 bits (240), Expect = 3.060e-19 Identity = 44/47 (93.62%), Postives = 47/47 (100.00%), Query Frame = 2
Query: 2 GSGLGMRELWLPGVPQLKVRVFQFDKLLLQELPRLYNHFRAKQLQLE 142
GSGLGMRELWLPGVPQLKVRVFQFDKL+L+ELPRLYNHF+AKQLQLE
Sbjct: 367 GSGLGMRELWLPGVPQLKVRVFQFDKLMLRELPRLYNHFKAKQLQLE 413
BLAST of mRNA_F-serratus_M_contig1226.1724.1 vs. uniprot
Match: A0A835YVP9_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVP9_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 3.020e-9 Identity = 29/44 (65.91%), Postives = 38/44 (86.36%), Query Frame = 2
Query: 17 MRELWLPGVPQLKVRVFQFDKLLLQELPRLYNHFRAKQLQLEPS 148
+ ELWLPGVP++K+RV+QFD+LL +ELPRL+ HF+ QLQLE S
Sbjct: 294 VEELWLPGVPEMKLRVYQFDRLLERELPRLHAHFKTTQLQLEVS 337
BLAST of mRNA_F-serratus_M_contig1226.1724.1 vs. uniprot
Match: A0A6U1BRV9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1BRV9_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 1.270e-8 Identity = 28/38 (73.68%), Postives = 33/38 (86.84%), Query Frame = 2
Query: 11 LGMRELWLPGVPQLKVRVFQFDKLLLQELPRLYNHFRA 124
LGMRELW PGVPQLK+RV+QF++LL Q LPR Y+HFR
Sbjct: 113 LGMRELWRPGVPQLKLRVYQFERLLEQHLPRTYHHFRG 150
BLAST of mRNA_F-serratus_M_contig1226.1724.1 vs. uniprot
Match: A0A4D9CRW7_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRW7_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 1.530e-7 Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 2
Query: 5 SGLGMRELWLPGVPQLKVRVFQFDKLLLQELPRLYNHFRAKQLQLEP 145
SGL MR LW P VP++K+RVFQFD+LL + LPRL+ HFR Q+QL P
Sbjct: 278 SGLSMRLLWHPQVPEMKLRVFQFDRLLARHLPRLHAHFR--QIQLVP 322
BLAST of mRNA_F-serratus_M_contig1226.1724.1 vs. uniprot
Match: A0A6H5KV33_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV33_9PHAE) HSP 1 Score: 59.3 bits (142), Expect = 2.360e-6 Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 2
Query: 38 GVPQLKVRVFQFDKLLLQELPRLYNHFRAKQLQLE 142
G +VRVFQFDKL+L+ELPRLYNHF+AKQLQLE
Sbjct: 330 GEDDSQVRVFQFDKLMLRELPRLYNHFKAKQLQLE 364
BLAST of mRNA_F-serratus_M_contig1226.1724.1 vs. uniprot
Match: A0A2R5G867_9STRA (TBC1 domain family member 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G867_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 2.050e-5 Identity = 22/35 (62.86%), Postives = 30/35 (85.71%), Query Frame = 2
Query: 17 MRELWLPGVPQLKVRVFQFDKLLLQELPRLYNHFR 121
MRELW PGVPQLK+R++QFD+L+ +LP ++ HFR
Sbjct: 211 MRELWRPGVPQLKLRIYQFDRLISSKLPLMHAHFR 245 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1226.1724.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1226.1724.1 >prot_F-serratus_M_contig1226.1724.1 ID=prot_F-serratus_M_contig1226.1724.1|Name=mRNA_F-serratus_M_contig1226.1724.1|organism=Fucus serratus male|type=polypeptide|length=260bp GVGARDARALAAWSAPVKGPSFPVRQAPAARAAAAVQPLQGEAAAARAVHback to top mRNA from alignment at F-serratus_M_contig1226:171063..176717- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1226.1724.1 ID=mRNA_F-serratus_M_contig1226.1724.1|Name=mRNA_F-serratus_M_contig1226.1724.1|organism=Fucus serratus male|type=mRNA|length=5655bp|location=Sequence derived from alignment at F-serratus_M_contig1226:171063..176717- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1226:171063..176717- >mRNA_F-serratus_M_contig1226.1724.1 ID=mRNA_F-serratus_M_contig1226.1724.1|Name=mRNA_F-serratus_M_contig1226.1724.1|organism=Fucus serratus male|type=CDS|length=1560bp|location=Sequence derived from alignment at F-serratus_M_contig1226:171063..176717- (Fucus serratus male)back to top |