mRNA_F-serratus_M_contig634.17241.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig634.17241.1 vs. uniprot
Match: A0A6H5KF78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF78_9PHAE) HSP 1 Score: 344 bits (883), Expect = 9.610e-93 Identity = 261/610 (42.79%), Postives = 324/610 (53.11%), Query Frame = 1
Query: 1900 GSPVVVTPGAAEELGTRLHEQARQSRERLQRHRKEGATPSFSRAIASNVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVTSPLSP------FTPRMWSNPR--IGN----PSVAGVERIESLYRDAILRNSKLEIARRAAE-RPIECTFTPELSKRATSRGKAEKREGGDFGGGEGGKV------------------STFDALYLDAKRRRAKMDALCGAHMKDAMVRASPVITARGRQASVVPLEARMKENAERWVRRWKELEKRKIQLEQQGCTFMPNFNVGRSISAPRMRLRRDT-----IGGGDVNQDGTVSFVERSYKFQMERAKKIEKLKLEAIERERAEATFRPKLL--SSREGDNGGPAGIDVFERLLKAATEQEMNKVALKELLWKQERERYHDFQPQLPSRGLEGPPVPLEVRMKKSTQDWIKGRAQREQRRYELEAEQCTFRPSLG------------------------------------------SVAGAGSRR-SASLGPRLRARSPLTSSSERKAVAEADAFAVRAAALQKARGQRVEGLRKEKTKLELKRATSQPVTGKNVR--ADRGS--------GTGACALSLT 3456
G + ++P AE G RLHEQAR++RERL+R RKE V +PL+P F+PR WS PR G P V+G +R+E LYRDAI RNS+LE+ARRA E RP ECTFTPE+SKR S + +GG GGE TFDALY DAKRR+AKM+AL GAH ++ R SPVITA GRQA+ VP++ RMKE+AERWVRR++ELE++K + E++GCTFMPNF++GRS SAPRMR RR +FV RS F R + ++KLK EA ERERA ATF+P +L R + A DVFERLL+AA QEMNK ALKE K+ERE+Y+DF+P+LP+R + P PL+ R+++ST++W+K +A REQRR ELEAE CTFRPSLG S SRR S +GP A A AFA R AA Q A+ QR+E LRKEK +LEL+ AT QPV G R DRG GT A A S+T
Sbjct: 719 GVALTLSPALAEASGNRLHEQAREARERLERRRKE-----------------------------------------------VPVVTPLAPMPGLTSFSPRRWSAPRGPAGGAGAAPVVSGPDRLEGLYRDAIERNSRLELARRAEEERPRECTFTPEISKRGRSLVRGYSSDGG---GGEXXXXXXXXXXXXXXXXXXXSLFDTFDALYQDAKRRQAKMEALKGAH-EEVGRRTSPVITAMGRQATGVPIDVRMKEDAERWVRRFQELEEKKAEKEKEGCTFMPNFSIGRSSSAPRMRPRRSNGXXXXXXXXXXXXXXIEAFVARSAIFLEARERNMKKLKEEAEERERALATFKPSILPWGGRSAADDASAAADVFERLLRAAENQEMNKAALKEEFLKKEREQYNDFEPRLPTRQKDAPMEPLDARIRRSTEEWVKNKALREQRRLELEAEHCTFRPSLGGGGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTRQRASRRASGGVGP-----------------AAAAAFAAREAAFQDAKKQRLEALRKEKEQLELQEATFQPVIGAEARRAGDRGGDPVGGSSRGTDAVAGSVT 1260
BLAST of mRNA_F-serratus_M_contig634.17241.1 vs. uniprot
Match: D8LNB8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNB8_ECTSI) HSP 1 Score: 328 bits (842), Expect = 9.050e-88 Identity = 260/609 (42.69%), Postives = 324/609 (53.20%), Query Frame = 1
Query: 2152 VTSPLSP------FTPRMWSNPR--IGN----PSVAGVERIESLYRDAILRNSKLEIARRAAE-RPIECTFTPELSKRATSRGKAEKREGGDFGGGEGGKV-----------------------STFDALYLDAKRRRAKMDALCGAHMKDAMVRASPVITARGRQASVVPLEARMKENAERWVRRWKELEKRKIQLEQQGCTFMPNFNVGRSISAPRMRLRRDTIGGGDVNQD-GTVSFVERSYKFQMERAKKIEKLKLEAIERERAEATFRPKLLSSREGDNGGPAG--IDVFERLLKAATEQEMNKVALKELLWKQERERYHDFQPQLPSRGLEGPPVPLEVRMKKSTQDWIKGRAQREQRRYELEAEQCTFRPSLG------------------------------------------SVAGAGSRR-SASLGPRLRARSPLTSSSERKAVAEADAFAVRAAALQKARGQRVEGLRKEKTKLELKRATSQPVTGKNVRADRGSG------------------TGACALSLT-----RETGRLGMTEEKKQH-VDEIPVSQPGA-APAGRLPRAAAVAPRKS-VKRGIDMEELSARLQGLAAAEGF 3654
V +PL+P F+PR WS PR G P V+G++R+E LYRDAI RNS+LE+ARRA E +P ECTFTPE+SKR S + +G TFDALY DAKRR+AKM+AL AH ++ R SPVITA GRQA+ VP++ RMKE+AERWVRR++ELE++K + E++GCTFMPNF++GRS SAPRMR RR G +FV RS F R + +EKLK EA ERERA ATF+P +L G A DVFERLL+AA QEMNK ALKE K+ERE+ +DF+P+LP+R + P PL+ R++KST++W+K +A REQRR ELEAE CTFRPSLG S SRR S +GP A A AFA R AA Q A+ QR+E LRKEK +LE++ AT QPV G R G G TGA +T + + E K VD I + A A AGR A P KS V +G+D+ ELS+RLQ LA A F
Sbjct: 746 VVTPLAPMPGFTSFSPRRWSAPRGPAGGAGAAPVVSGLDRLEGLYRDAIERNSRLELARRAEEEKPRECTFTPEISKRGRSLVRGYSGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLFDTFDALYQDAKRRQAKMEAL-KAH-EEVGTRTSPVITAMGRQATGVPVDVRMKEDAERWVRRFQELEEKKAEKEKEGCTFMPNFSIGRSSSAPRMRPRRSNXXXXXXXXXXGIEAFVARSAIFLETRERNMEKLKQEAEERERALATFKPSILPWGGGSAADDASSAADVFERLLRAAENQEMNKAALKEEFLKKEREQNNDFEPRLPTRQKDAPLEPLDARIRKSTEEWVKNKALREQRRLELEAEHCTFRPSLGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSTRQRASRRASGGVGP-----------------AAATAFAAREAAFQDAKKQRLEALRKEKEQLEVQEATFQPVIGAEARRASGRGGSSVGGXXRGTDAVAGSVTGASETKITTPVTVERPSSVELKEGAKDDGVDMIATAAAVAEASAGRGGGAVDDHPGKSGVDQGVDVGELSSRLQQLATASSF 1335 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig634.17241.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig634.17241.1 >prot_F-serratus_M_contig634.17241.1 ID=prot_F-serratus_M_contig634.17241.1|Name=mRNA_F-serratus_M_contig634.17241.1|organism=Fucus serratus male|type=polypeptide|length=1644bp MENLSLEEKIATFKKKIDELDPLTAPASGEPQTNTSVPPAVEKEFKKEFEback to top mRNA from alignment at F-serratus_M_contig634:223363..243137- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig634.17241.1 ID=mRNA_F-serratus_M_contig634.17241.1|Name=mRNA_F-serratus_M_contig634.17241.1|organism=Fucus serratus male|type=mRNA|length=19775bp|location=Sequence derived from alignment at F-serratus_M_contig634:223363..243137- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig634:223363..243137- >mRNA_F-serratus_M_contig634.17241.1 ID=mRNA_F-serratus_M_contig634.17241.1|Name=mRNA_F-serratus_M_contig634.17241.1|organism=Fucus serratus male|type=CDS|length=9864bp|location=Sequence derived from alignment at F-serratus_M_contig634:223363..243137- (Fucus serratus male)back to top |