mRNA_F-serratus_M_contig631.17170.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig631.17170.1
Unique NamemRNA_F-serratus_M_contig631.17170.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig631.17170.1 vs. uniprot
Match: A0A1Y4DBS3_9ACTN (Uncharacterized protein n=1 Tax=Collinsella sp. An271 TaxID=1965616 RepID=A0A1Y4DBS3_9ACTN)

HSP 1 Score: 55.5 bits (132), Expect = 9.250e-9
Identity = 33/62 (53.23%), Postives = 37/62 (59.68%), Query Frame = 1 
Query:    1 INRGYAQLQELTVHLTTRADDSHATPEN-PKIQYVSVRMTDLLELVRLRAYYRIKPHAPPLV 183
            + RG   L++LT HLTTRADDSHA P + P    VS        LVR  A  RIKPHAP LV
Sbjct:    1 MRRGLRSLRDLTQHLTTRADDSHAPPVSAPSGHGVSPASPTCQALVRFFALLRIKPHAPLLV 62
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BLAST of mRNA_F-serratus_M_contig631.17170.1 vs. uniprot
Match: A0A6A5L0V1_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L0V1_LUPAL)

HSP 1 Score: 54.7 bits (130), Expect = 3.960e-7
Identity = 33/68 (48.53%), Postives = 37/68 (54.41%), Query Frame = 1 
Query:    1 INRGYAQLQELTVHLTTRADDSHATP-------ENPKIQYVSVRMTDLLELVRLRAYYRIKPHAPPLV 183
            I +G   L++LT HLTTRADDSHA P       E P    +S        LVR  A  RIKPH PPLV
Sbjct:  335 IGQGLRSLRDLTQHLTTRADDSHAPPVFTSPEGEGP----ISKSFAQCQALVRFFALRRIKPHTPPLV 398
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BLAST of mRNA_F-serratus_M_contig631.17170.1 vs. uniprot
Match: A0A6A5L6Q4_LUPAL (Uncharacterized protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A5L6Q4_LUPAL)

HSP 1 Score: 52.8 bits (125), Expect = 1.460e-6
Identity = 32/65 (49.23%), Postives = 35/65 (53.85%), Query Frame = 1 
Query:   10 GYAQLQELTVHLTTRADDSHATP-------ENPKIQYVSVRMTDLLELVRLRAYYRIKPHAPPLV 183
            G   L++LT HLTTRADDSHA P       E P    +S        LVR  A  RIKPH PPLV
Sbjct:   87 GLRSLRDLTQHLTTRADDSHAPPVFTSPEGEGP----ISKSFAQCQALVRFFALRRIKPHTPPLV 147
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BLAST of mRNA_F-serratus_M_contig631.17170.1 vs. uniprot
Match: A0A078BGN1_9BURK (Uncharacterized protein n=1 Tax=Thiomonas sp. CB2 TaxID=554131 RepID=A0A078BGN1_9BURK)

HSP 1 Score: 48.1 bits (113), Expect = 1.110e-5
Identity = 24/57 (42.11%), Postives = 32/57 (56.14%), Query Frame = -1 
Query:   34 NKWWSMWFNAIIRA*PYQF**ICHSYGDVLNFGIF-------RCCMAVVSSCREMYG 183
            +K W MWFN++ R  PY    +  +  ++   G+        RCCMAVVSSCREM G
Sbjct:   39 HKRWMMWFNSMQREKPY----LPLTCQELTRDGLVLEREPGHRCCMAVVSSCREMLG 91
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig631.17170.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A1Y4DBS3_9ACTN9.250e-953.23Uncharacterized protein n=1 Tax=Collinsella sp. An... [more]
A0A6A5L0V1_LUPAL3.960e-748.53Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A6A5L6Q4_LUPAL1.460e-649.23Uncharacterized protein n=1 Tax=Lupinus albus TaxI... [more]
A0A078BGN1_9BURK1.110e-542.11Uncharacterized protein n=1 Tax=Thiomonas sp. CB2 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig631contigF-serratus_M_contig631:243341..243526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931949.0291164-CDS-F-serratus_M_contig631:243340..2435261622931949.0291164-CDS-F-serratus_M_contig631:243340..243526Fucus serratus maleCDSF-serratus_M_contig631 243341..243526 +
1690964071.8426566-CDS-F-serratus_M_contig631:243340..2435261690964071.8426566-CDS-F-serratus_M_contig631:243340..243526Fucus serratus maleCDSF-serratus_M_contig631 243341..243526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig631.17170.1prot_F-serratus_M_contig631.17170.1Fucus serratus malepolypeptideF-serratus_M_contig631 243341..243526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig631.17170.1

>prot_F-serratus_M_contig631.17170.1 ID=prot_F-serratus_M_contig631.17170.1|Name=mRNA_F-serratus_M_contig631.17170.1|organism=Fucus serratus male|type=polypeptide|length=62bp
INRGYAQLQELTVHLTTRADDSHATPENPKIQYVSVRMTDLLELVRLRAY
YRIKPHAPPLV*
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mRNA from alignment at F-serratus_M_contig631:243341..243526+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig631.17170.1 ID=mRNA_F-serratus_M_contig631.17170.1|Name=mRNA_F-serratus_M_contig631.17170.1|organism=Fucus serratus male|type=mRNA|length=186bp|location=Sequence derived from alignment at F-serratus_M_contig631:243341..243526+ (Fucus serratus male)
ATAAATAGGGGTTACGCTCAGTTACAGGAATTAACCGTACATCTCACGAC
ACGAGCTGACGACAGCCATGCAACACCTGAAAATCCCAAAATTCAATACG
TCTCCGTAAGAATGACAGATTTACTAGAACTGGTAAGGTTACGCGCGTAT
TATCGCATTAAACCACATGCTCCACCACTTGTTTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig631:243341..243526+

>mRNA_F-serratus_M_contig631.17170.1 ID=mRNA_F-serratus_M_contig631.17170.1|Name=mRNA_F-serratus_M_contig631.17170.1|organism=Fucus serratus male|type=CDS|length=372bp|location=Sequence derived from alignment at F-serratus_M_contig631:243341..243526+ (Fucus serratus male)
ATAAATAGGGGTTACGCTCAGTTACAGGAATTAACCGTACATCTCACGAC
ACGAGCTGACGACAGCCATGCAACACCTGAAAATCCCAAAATTCAATACG
TCTCCGTAAGAATGACAGATTTACTAGAACTGGTAAGGTTACGCGCGTAT
TATCGCATTAAACCACATGCTCCACCACTTGTTTGAATAAATAGGGGTTA
CGCTCAGTTACAGGAATTAACCGTACATCTCACGACACGAGCTGACGACA
GCCATGCAACACCTGAAAATCCCAAAATTCAATACGTCTCCGTAAGAATG
ACAGATTTACTAGAACTGGTAAGGTTACGCGCGTATTATCGCATTAAACC
ACATGCTCCACCACTTGTTTGA
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