mRNA_F-serratus_M_contig6277.17114.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig6277.17114.1 vs. uniprot
Match: D7FSX8_ECTSI (Ubiquitin carboxyl-terminal hydrolase 64E n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSX8_ECTSI) HSP 1 Score: 101 bits (251), Expect = 1.110e-17 Identity = 54/101 (53.47%), Postives = 67/101 (66.34%), Query Frame = 1
Query: 4 GVVDAQAGGEHGRWLDFDDRKVSPISIVDLEKPFAGTETAHMLIYRSRSLDEEA--PM----------ASMSG------IIGSLHMASIPPQYWIDRVGVD 252
G VDA A +HGRW FDDRKV+PISI DL+KPF G ETA++LIYRSRSLD+EA P+ AS +G + G LHM S+PP YW+D+V +
Sbjct: 735 GAVDALASEKHGRWFSFDDRKVTPISIRDLQKPFEGAETAYLLIYRSRSLDQEAGSPVSPADIAAAVSASSAGSGGPRNLPGGLHMTSVPPSYWMDKVDTE 835
BLAST of mRNA_F-serratus_M_contig6277.17114.1 vs. uniprot
Match: A0A6H5JBL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL7_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 6.050e-10 Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 1
Query: 4 GVVDAQAGGEHGRWLDFDDRKVSPISIVDLEKPFAGTETAHMLIYRSRSL 153
G VDA A +HGRW FDDRKV+PISI DL+KPF G ETA++LIYRSR++
Sbjct: 575 GAVDALASEKHGRWFSFDDRKVTPISIRDLQKPFEGAETAYLLIYRSRNI 624 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig6277.17114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig6277.17114.1 >prot_F-serratus_M_contig6277.17114.1 ID=prot_F-serratus_M_contig6277.17114.1|Name=mRNA_F-serratus_M_contig6277.17114.1|organism=Fucus serratus male|type=polypeptide|length=1045bp MLIYRSRSLDEEAPMASMSGIIGSLHMASIPPQYWIDRVGVDIKRCIRAEback to top mRNA from alignment at F-serratus_M_contig6277:6084..27075- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig6277.17114.1 ID=mRNA_F-serratus_M_contig6277.17114.1|Name=mRNA_F-serratus_M_contig6277.17114.1|organism=Fucus serratus male|type=mRNA|length=20992bp|location=Sequence derived from alignment at F-serratus_M_contig6277:6084..27075- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig6277:6084..27075- >mRNA_F-serratus_M_contig6277.17114.1 ID=mRNA_F-serratus_M_contig6277.17114.1|Name=mRNA_F-serratus_M_contig6277.17114.1|organism=Fucus serratus male|type=CDS|length=6270bp|location=Sequence derived from alignment at F-serratus_M_contig6277:6084..27075- (Fucus serratus male)back to top |