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Homology
BLAST of mRNA_F-serratus_M_contig622.17061.1 vs. uniprot
Match: D7G0L6_ECTSI (Hypothetical leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0L6_ECTSI) HSP 1 Score: 412 bits (1059), Expect = 2.760e-124 Identity = 200/311 (64.31%), Postives = 234/311 (75.24%), Query Frame = 1
Query: 745 GGSLWFKVEHVVCFLQLLALALDVDGASWPPLFVKVWSWTWFTTGYLRWPLLALIRRVGWEFSLTFGEGERDLWFFRDVVGYGLEVYATVVVAFALFFVFEMPDYTGHEPKAAWKRSFLTSWFRLTLLRYLLNLSLCFAMLFALAYYGTLIFPEEVVKGVVVVGGALVMVTWLSVVILSFAVHVAIRVVTKHDAEYSFITAIKHAVKIKGRVCLFILHLVYIPVTVSIVRALLPVFDWNKNWTKESRRHYYNYHVSCYFLGFPPQLSDYTRSITVLDCTSESGVAVYTLSVCLLLLFTCGLPNMVRQDHAF 1677
GGSLWFK E +V LQLLALALDV GA WPPLFV++WSW W T YLRWP L L+RRVG EFSLTFG+ + DLWFFRDV+GYG+EV A V F FFV +MPDYT +PKAAW+RSFLT WFR TL RYLLNL LC+ + Y+G + P +VVK V+VVGG L+ V+W+ VV+LS VHV +R+ TKHDAEYSF+ A+KH VK KGR CLF LHL Y+P+T SIVRAL+P FDWN W ESRR Y N+HV C F+GFPPQL T + VL+CTS SGVAV+TLS CL+L F CGLPNMVR F
Sbjct: 86 GGSLWFKAERIVITLQLLALALDVYGAPWPPLFVRMWSWVWLTNQYLRWPALVLLRRVGREFSLTFGDAQLDLWFFRDVIGYGVEVCAASVAVFVFFFVLQMPDYTSSKPKAAWRRSFLTHWFRRTLPRYLLNLGLCYVAFAGVTYFGEVFVPPDVVKAVIVVGGTLLTVSWILVVLLSLLVHVNVRMATKHDAEYSFMIAMKHVVKTKGRTCLFFLHLAYVPLTASIVRALVPEFDWNDKWAHESRREY-NHHVWCNFMGFPPQLEG-TAEMIVLECTSTSGVAVHTLSACLVLFFACGLPNMVRYLVRF 394
BLAST of mRNA_F-serratus_M_contig622.17061.1 vs. uniprot
Match: A0A835YNL2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNL2_9STRA) HSP 1 Score: 143 bits (361), Expect = 3.120e-32 Identity = 86/197 (43.65%), Postives = 108/197 (54.82%), Query Frame = 1
Query: 748 GSLWFKVEHVVCFLQLLALALDVDGASWPPLFVKVWSWTWFTTGYLRWPLLALIRRVGWEFSLTFGEGERDLWFFRDVVGYGLEVYATVVVAFALFFVFEMPDYTGHEPKAAWKRSFLTSWFRLTLLRYLLNLSLCFAMLFALAYYGTLIFPEEVVKGVVVVGGALVMVTWLSVVILSFAVHVAIRVVTKHDAEYSF 1338
G+LWFKVE VV FLQ+L LA V SWPP+F +W W+ + + R PL L+R T +G LW +R VVGY E F L V MPDY W+R +LT W+ +LLRYL S+ A++ AL YG L FPE VV G V AL V VV LSFA+H+ +R +HDA+YSF
Sbjct: 135 GTLWFKVERVVHFLQVLWLARQVPVDSWPPVFTALWGWSSWAATFARTPLPWLLRWAEHRAGYTLPDG-LSLWHYRSVVGYTAEAAVPAFAVFVLLHVLSMPDYADPAACRRWERLYLTHWYTRSLLRYLAWGSVAAAIVAALRIYGDLAFPEAVVAGAAVSLAALASVLGGIVVALSFAIHLRLRDAARHDAKYSF 330
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 413.7 |
| Seed ortholog evalue | 1.3e-112 |
| Seed eggNOG ortholog | 2880.D7G0L6 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | interleukin-8 biosynthetic process |
| EggNOG OGs | KOG4308@1,KOG4308@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 4 |
| Model size | 1683 |
| Cds size | 1551 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622931928.6765125-CDS-F-serratus_M_contig622:359946..360069 | 1622931928.6765125-CDS-F-serratus_M_contig622:359946..360069 | Fucus serratus male | CDS | F-serratus_M_contig622 359947..360069 - |
| 1690964061.8889925-CDS-F-serratus_M_contig622:359946..360069 | 1690964061.8889925-CDS-F-serratus_M_contig622:359946..360069 | Fucus serratus male | CDS | F-serratus_M_contig622 359947..360069 - |
| 1622931928.6913776-CDS-F-serratus_M_contig622:360350..360560 | 1622931928.6913776-CDS-F-serratus_M_contig622:360350..360560 | Fucus serratus male | CDS | F-serratus_M_contig622 360351..360560 - |
| 1690964061.901726-CDS-F-serratus_M_contig622:360350..360560 | 1690964061.901726-CDS-F-serratus_M_contig622:360350..360560 | Fucus serratus male | CDS | F-serratus_M_contig622 360351..360560 - |
| 1622931928.707006-CDS-F-serratus_M_contig622:360790..362008 | 1622931928.707006-CDS-F-serratus_M_contig622:360790..362008 | Fucus serratus male | CDS | F-serratus_M_contig622 360791..362008 - |
| 1690964061.9127758-CDS-F-serratus_M_contig622:360790..362008 | 1690964061.9127758-CDS-F-serratus_M_contig622:360790..362008 | Fucus serratus male | CDS | F-serratus_M_contig622 360791..362008 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622931928.7243938-UTR-F-serratus_M_contig622:362008..362009 | 1622931928.7243938-UTR-F-serratus_M_contig622:362008..362009 | Fucus serratus male | UTR | F-serratus_M_contig622 362009..362009 - |
| 1690964061.930256-UTR-F-serratus_M_contig622:362008..362009 | 1690964061.930256-UTR-F-serratus_M_contig622:362008..362009 | Fucus serratus male | UTR | F-serratus_M_contig622 362009..362009 - |
| 1622931928.7431238-UTR-F-serratus_M_contig622:362934..363065 | 1622931928.7431238-UTR-F-serratus_M_contig622:362934..363065 | Fucus serratus male | UTR | F-serratus_M_contig622 362935..363065 - |
| 1690964061.940807-UTR-F-serratus_M_contig622:362934..363065 | 1690964061.940807-UTR-F-serratus_M_contig622:362934..363065 | Fucus serratus male | UTR | F-serratus_M_contig622 362935..363065 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig622.17061.1 >prot_F-serratus_M_contig622.17061.1 ID=prot_F-serratus_M_contig622.17061.1|Name=mRNA_F-serratus_M_contig622.17061.1|organism=Fucus serratus male|type=polypeptide|length=517bp
MRVKKYKRVRRQKIQPELHELTKDQRGTSTKGGISQAPGRTEESESCSAV EGDDERGQEISGSDLGQNNAVLSEKSQGHDTNAAAGTIDEKAGNKLSRNK GNNLIPSGTDRESVDVTDVHASTISVPPSKSNGDDDTPPGNPTPRTIACS EEVSLTPPGSSHEYGRAANVPSTHREGQDIREDNDTLSSDRGGSNCEKGK FLVSGGSLWFKVEHVVCFLQLLALALDVDGASWPPLFVKVWSWTWFTTGY LRWPLLALIRRVGWEFSLTFGEGERDLWFFRDVVGYGLEVYATVVVAFAL FFVFEMPDYTGHEPKAAWKRSFLTSWFRLTLLRYLLNLSLCFAMLFALAY YGTLIFPEEVVKGVVVVGGALVMVTWLSVVILSFAVHVAIRVVTKHDAEY SFITAIKHAVKIKGRVCLFILHLVYIPVTVSIVRALLPVFDWNKNWTKES RRHYYNYHVSCYFLGFPPQLSDYTRSITVLDCTSESGVAVYTLSVCLLLL FTCGLPNMVRQDHAFN* back to topmRNA from alignment at F-serratus_M_contig622:359947..363065- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig622.17061.1 ID=mRNA_F-serratus_M_contig622.17061.1|Name=mRNA_F-serratus_M_contig622.17061.1|organism=Fucus serratus male|type=mRNA|length=3119bp|location=Sequence derived from alignment at F-serratus_M_contig622:359947..363065- (Fucus serratus male) CTGCTGTAGTGTACGTAACCAAACCTTTCAACATCAAATCCTCGGACGGC
GTCTATACTCGGAAGATTTCGATGCGTTCAGAGTCTTGTACAAGGACTCA
TCATCGTCGGATTCGGGTTGGTGCATTGGATGTAAGCACACAAAAGTAAA
AATATACGGATAATATATTATTTGAAGTCGGGGTTAAACATTTATTACAT
GTACTCATTGCTGGTAATATTTACAATATTTCTCAGATTTTTTCAATGAA
ATTTCAACAATTTCACAACCCTACTCGTAAAACATCCTCTGGTCCGCCGG
TTGACGCATCACCATGCACCCTTAATTTTATCTGGAGTCGTGAGCTATCG
ATATGGCTCGACGCAACGTCGGTAGAGGTACAAGCGGTAGACGTCGCTGC
CGCTCACGATGTCGGCACTGATCACAGCGCATCTTCGAGTAGCCTGAATT
AAGGAGGTGTGGGGTAAAAAGGCATCTGCGGCATAATCCCTCGACGTCTG
GTTCACTTAGAGTGGAAGGCTTGTCCTCCACAATAACAGAAAAGCTCGTG
CGATTATACTTGTAGAAGTTTCCCTCCTTGAGTGTCCGAGGTCTTCTTGC
CGTGGCCTGTTAGTTATTACCCAGATTCGGGGAACAAGATCGAGGTAGGT
ATCAGGTAGAAATATGCCGATGTCTCAAAAGAGCGTTTATTGGTCAAATC
TTGGTCGTCACTGGATCATAGTCTTGAAGTTCATTAAACATACTTCGACC
AGGATTTGGGCGAGTCTCCCCCACGCGCCAGACGTATGACCCACGCAAGC
TAATACTCAGCAACATGATACCCTTCACGTTGGGCCAATCGGCCTGGAGT
TGTGTCATGGGCTACCTAATTATACAGAGGGAGCGACAAGAAAGTAACGT
ATAAATACTTAGCATTGAAATCTGCGTTTTTTTTAAGTGGACGATTGCAG
GGAAACTTATTCCTACGCCGAGAACCGGAACGAATATACCCTCAACACAC
GCGTCAAGAGCAAAGTTCAGCAATCATAAAACCATTTTTTTTTACGTTTA
CGGCAGAATGCGAGTCAAAAAGTACAAGCGCGTTAGACGACAAAAAATCC
AGCCAGAGCTCCATGAACTGACAAAAGACCAGCGAGGTACAAGCACAAAG
GGAGGTATATCGCAAGCTCCTGGGCGTACAGAGGAAAGTGAAAGCTGCTC
AGCCGTGGAGGGTGACGATGAGCGTGGTCAGGAAATCTCTGGCAGTGACC
TCGGCCAAAATAACGCAGTTCTTTCAGAAAAAAGTCAAGGTCACGACACC
AACGCTGCGGCTGGAACTATCGATGAAAAAGCGGGTAATAAGTTGTCTCG
AAATAAAGGCAATAATTTAATTCCATCGGGTACGGACAGGGAGAGCGTGG
ACGTGACGGACGTACACGCCTCTACCATATCTGTCCCTCCTTCCAAATCC
AACGGAGATGACGACACACCGCCCGGAAACCCCACTCCAAGAACGATTGC
ATGCTCGGAGGAAGTATCTCTCACTCCACCCGGGTCCAGTCATGAGTACG
GTCGTGCCGCCAATGTTCCTTCGACTCATCGGGAAGGGCAGGACATACGC
GAAGACAACGATACCCTTTCTAGCGACAGGGGTGGCAGTAATTGCGAGAA
GGGCAAGTTCCTAGTTAGTGGAGGCTCACTTTGGTTCAAGGTAGAGCACG
TGGTGTGCTTCCTGCAGCTTCTCGCGCTTGCGTTGGACGTGGATGGCGCG
TCATGGCCCCCATTATTTGTTAAAGTGTGGAGCTGGACATGGTTCACAAC
GGGGTACCTACGCTGGCCACTTCTGGCCCTAATTCGACGCGTTGGGTGGG
AGTTCTCATTGACATTCGGTGAAGGGGAGCGGGACCTGTGGTTCTTCCGC
GACGTTGTCGGGTACGGATTGGAGGTCTACGCCACTGTGGTCGTGGCTTT
CGCTCTGTTTTTCGTGTTTGAGATGCCGGACTACACCGGTCACGAGCCGA
AAGCAGCGTGGAAGCGCAGCTTCTTGACTTCCTGGTTCCGGCTCACTCTA
CTGCGATACCTCCTGAACCTGAGTCTCTGCTTCGCGATGCTGTTCGCTCT
AGCGTACTATGGAACTTTGATATTTCCGGAGGAGGTGGTCAAGGGCGTGG
TCGTCGTCGGTGGCGCATTGGTGATGGTTACTTGGCTCTCCGTGGTGATA
CTTTCGTTCGCGGTGCACGTAGCGATTCGTGTCGTTACTAAGCACGATGC
CGAGTACTCCTTCATCACTGCCATAGTGAGTGGGCTAAGAAGGCGCTGAC
CGAGCGATCATTGCAACAAAAGCTGTCGTTGGAGACGCCGCCAGCAAACC
CCTCCGCAAAGTTTTTTTTGTTCTTCTTTTTCTCTATCTTACCCTTACCA
TCATCCGGAACGCTGCACATCATTGTTCCGAGTACCGAAATCCAGCAGCA
TTTGATCACTAGACGTACCCCACGATGTCGACTGGTGCCAAACGCAAAAT
TTCAGAAACACGCGGTTAAGATCAAGGGTCGTGTCTGTCTGTTCATTCTG
CATCTGGTTTATATTCCCGTCACGGTCAGCATCGTCCGGGCGCTTTTGCC
CGTGTTCGATTGGAATAAAAATTGGACGAAAGAGTCGCGACGACACTATT
ACAACTACCATGTCTCGTGCTATTTCTTGGGCTTCCCCCCTCAGTTGAGT
GATTATACCCGCAGTGTATTATGTGAATGGCGCCCGATGATCCTTCCCCC
CTTAGTTAACAAGCACCGATGAGTTAAGGTCGCCCCTTCTGTTTTTCTCC
AGTATCCGCGACGCGACGAACACTTTAGCATTTCACCAGCTTAGCATGCC
AAAGTCGAGCTCACCTGGCAGGGCACGTTAATCCTCGTCTTAGATCGTGG
TAATTAAACTTCGTTACGGGCTCGCACTCGTAGGAGACTTGGGTGAAGTT
TTCCTGCTCATTGCTACAACATGTACAGTTCGGCGGTGCGAACGAGATTA
CCGTCCTGGATTGCACAAGTGAGAGCGGAGTTGCTGTTTACACGTTGTCG
GTCTGCTTACTGCTGCTCTTTACGTGCGGCTTGCCCAACATGGTCAGGCA
AGACCACGCATTCAACTAG back to topCoding sequence (CDS) from alignment at F-serratus_M_contig622:359947..363065- >mRNA_F-serratus_M_contig622.17061.1 ID=mRNA_F-serratus_M_contig622.17061.1|Name=mRNA_F-serratus_M_contig622.17061.1|organism=Fucus serratus male|type=CDS|length=3102bp|location=Sequence derived from alignment at F-serratus_M_contig622:359947..363065- (Fucus serratus male) ATGCGAGTCAAAAAGTACAAGCGCGTTAGACGACAAAAAATCCAGCCAGA GCTCCATGAACTGACAAAAGACCAGCGAGGTACAAGCACAAAGGGAGGTA TATCGCAAGCTCCTGGGCGTACAGAGGAAAGTGAAAGCTGCTCAGCCGTG GAGGGTGACGATGAGCGTGGTCAGGAAATCTCTGGCAGTGACCTCGGCCA AAATAACGCAGTTCTTTCAGAAAAAAGTCAAGGTCACGACACCAACGCTG CGGCTGGAACTATCGATGAAAAAGCGGGTAATAAGTTGTCTCGAAATAAA GGCAATAATTTAATTCCATCGGGTACGGACAGGGAGAGCGTGGACGTGAC GGACGTACACGCCTCTACCATATCTGTCCCTCCTTCCAAATCCAACGGAG ATGACGACACACCGCCCGGAAACCCCACTCCAAGAACGATTGCATGCTCG GAGGAAGTATCTCTCACTCCACCCGGGTCCAGTCATGAGTACGGTCGTGC CGCCAATGTTCCTTCGACTCATCGGGAAGGGCAGGACATACGCGAAGACA ACGATACCCTTTCTAGCGACAGGGGTGGCAGTAATTGCGAGAAGGGCAAG TTCCTAGTTAGTGGAGGCTCACTTTGGTTCAAGGTAGAGCACGTGGTGTG CTTCCTGCAGCTTCTCGCGCTTGCGTTGGACGTGGATGGCGCGTCATGGC CCCCATTATTTGTTAAAGTGTGGAGCTGGACATGGTTCACAACGGGGTAC CTACGCTGGCCACTTCTGGCCCTAATTCGACGCGTTGGGTGGGAGTTCTC ATTGACATTCGGTGAAGGGGAGCGGGACCTGTGGTTCTTCCGCGACGTTG TCGGGTACGGATTGGAGGTCTACGCCACTGTGGTCGTGGCTTTCGCTCTG TTTTTCGTGTTTGAGATGCCGGACTACACCGGTCACGAGCCGAAAGCAGC GTGGAAGCGCAGCTTCTTGACTTCCTGGTTCCGGCTCACTCTACTGCGAT ACCTCCTGAACCTGAGTCTCTGCTTCGCGATGCTGTTCGCTCTAGCGTAC TATGGAACTTTGATATTTCCGGAGGAGGTGGTCAAGGGCGTGGTCGTCGT CGGTGGCGCATTGGTGATGGTTACTTGGCTCTCCGTGGTGATACTTTCGT TCGCGGTGCACGTAGCGATTCGTGTCGTTACTAAGCACGATGCCGAGTAC TCCTTCATCACTGCCATAATGCGAGTCAAAAAGTACAAGCGCGTTAGACG ACAAAAAATCCAGCCAGAGCTCCATGAACTGACAAAAGACCAGCGAGGTA CAAGCACAAAGGGAGGTATATCGCAAGCTCCTGGGCGTACAGAGGAAAGT GAAAGCTGCTCAGCCGTGGAGGGTGACGATGAGCGTGGTCAGGAAATCTC TGGCAGTGACCTCGGCCAAAATAACGCAGTTCTTTCAGAAAAAAGTCAAG GTCACGACACCAACGCTGCGGCTGGAACTATCGATGAAAAAGCGGGTAAT AAGTTGTCTCGAAATAAAGGCAATAATTTAATTCCATCGGGTACGGACAG GGAGAGCGTGGACGTGACGGACGTACACGCCTCTACCATATCTGTCCCTC CTTCCAAATCCAACGGAGATGACGACACACCGCCCGGAAACCCCACTCCA AGAACGATTGCATGCTCGGAGGAAGTATCTCTCACTCCACCCGGGTCCAG TCATGAGTACGGTCGTGCCGCCAATGTTCCTTCGACTCATCGGGAAGGGC AGGACATACGCGAAGACAACGATACCCTTTCTAGCGACAGGGGTGGCAGT AATTGCGAGAAGGGCAAGTTCCTAGTTAGTGGAGGCTCACTTTGGTTCAA GGTAGAGCACGTGGTGTGCTTCCTGCAGCTTCTCGCGCTTGCGTTGGACG TGGATGGCGCGTCATGGCCCCCATTATTTGTTAAAGTGTGGAGCTGGACA TGGTTCACAACGGGGTACCTACGCTGGCCACTTCTGGCCCTAATTCGACG CGTTGGGTGGGAGTTCTCATTGACATTCGGTGAAGGGGAGCGGGACCTGT GGTTCTTCCGCGACGTTGTCGGGTACGGATTGGAGGTCTACGCCACTGTG GTCGTGGCTTTCGCTCTGTTTTTCGTGTTTGAGATGCCGGACTACACCGG TCACGAGCCGAAAGCAGCGTGGAAGCGCAGCTTCTTGACTTCCTGGTTCC GGCTCACTCTACTGCGATACCTCCTGAACCTGAGTCTCTGCTTCGCGATG CTGTTCGCTCTAGCGTACTATGGAACTTTGATATTTCCGGAGGAGGTGGT CAAGGGCGTGGTCGTCGTCGGTGGCGCATTGGTGATGGTTACTTGGCTCT CCGTGGTGATACTTTCGTTCGCGGTGCACGTAGCGATTCGTGTCGTTACT AAGCACGATGCCGAGTACTCCTTCATCACTGCCATAAAACACGCGGTTAA GATCAAGGGTCGTGTCTGTCTGTTCATTCTGCATCTGGTTTATATTCCCG TCACGGTCAGCATCGTCCGGGCGCTTTTGCCCGTGTTCGATTGGAATAAA AATTGGACGAAAGAGTCGCGACGACACTATTACAACTACCATGTCTCGTG CTATTTCTTGGGCTTCCCCCCTCAGTTGAGTGATTATACCCGCAGTAAAC ACGCGGTTAAGATCAAGGGTCGTGTCTGTCTGTTCATTCTGCATCTGGTT TATATTCCCGTCACGGTCAGCATCGTCCGGGCGCTTTTGCCCGTGTTCGA TTGGAATAAAAATTGGACGAAAGAGTCGCGACGACACTATTACAACTACC ATGTCTCGTGCTATTTCTTGGGCTTCCCCCCTCAGTTGAGTGATTATACC CGCAGTATTACCGTCCTGGATTGCACAAGTGAGAGCGGAGTTGCTGTTTA CACGTTGTCGGTCTGCTTACTGCTGCTCTTTACGTGCGGCTTGCCCAACA TGGTCAGGCAAGACCACGCATTCAACTAGATTACCGTCCTGGATTGCACA AGTGAGAGCGGAGTTGCTGTTTACACGTTGTCGGTCTGCTTACTGCTGCT CTTTACGTGCGGCTTGCCCAACATGGTCAGGCAAGACCACGCATTCAACT AG back to top
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