mRNA_F-serratus_M_contig62.17023.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig62.17023.1
Unique NamemRNA_F-serratus_M_contig62.17023.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig62.17023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig62contigF-serratus_M_contig62:737322..737930 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size260
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931921.1827693-CDS-F-serratus_M_contig62:737321..7375581622931921.1827693-CDS-F-serratus_M_contig62:737321..737558Fucus serratus maleCDSF-serratus_M_contig62 737322..737558 +
1690964058.42963-CDS-F-serratus_M_contig62:737321..7375581690964058.42963-CDS-F-serratus_M_contig62:737321..737558Fucus serratus maleCDSF-serratus_M_contig62 737322..737558 +
1622931921.20223-CDS-F-serratus_M_contig62:737909..7379301622931921.20223-CDS-F-serratus_M_contig62:737909..737930Fucus serratus maleCDSF-serratus_M_contig62 737910..737930 +
1690964058.440931-CDS-F-serratus_M_contig62:737909..7379301690964058.440931-CDS-F-serratus_M_contig62:737909..737930Fucus serratus maleCDSF-serratus_M_contig62 737910..737930 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig62.17023.1prot_F-serratus_M_contig62.17023.1Fucus serratus malepolypeptideF-serratus_M_contig62 737322..737930 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig62.17023.1

>prot_F-serratus_M_contig62.17023.1 ID=prot_F-serratus_M_contig62.17023.1|Name=mRNA_F-serratus_M_contig62.17023.1|organism=Fucus serratus male|type=polypeptide|length=86bp
RTVGVVGGSSGRHASGSSSSAWHASGGHVSGVPPGMGELVGPETPPPLKG
HNRRASLVDHNHEEPPEEIAEELMIGEIKNVSIKDE
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mRNA from alignment at F-serratus_M_contig62:737322..737930+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig62.17023.1 ID=mRNA_F-serratus_M_contig62.17023.1|Name=mRNA_F-serratus_M_contig62.17023.1|organism=Fucus serratus male|type=mRNA|length=609bp|location=Sequence derived from alignment at F-serratus_M_contig62:737322..737930+ (Fucus serratus male)
AGGACCGTGGGGGTTGTTGGAGGATCATCTGGAAGACACGCGTCTGGGAG
CTCCTCGTCTGCGTGGCACGCATCGGGGGGGCACGTGTCTGGGGTCCCGC
CGGGAATGGGGGAATTGGTTGGCCCGGAGACACCGCCGCCGCTGAAGGGC
CACAACCGTCGCGCTAGCCTGGTGGATCATAATCATGAAGAGCCCCCGGA
GGAGATCGCGGAGGAGCTCATGATCGGCGAGATCAAGGTACTTCGAACGT
AAAGGTCGTCAAAACCTGACGCGTGTTCTGTGAATCATTTCTGCTGCATC
GCGTCGTGAAGGTTCGACGTTTCGGGTGTTTTTATGGTTTGTCAACCCGA
TGAATCCATAAGAGTAGGTGAATCTCCCTCTTCTTTCCGGGGCTGGCTGT
CATCGGTGATCCGTGCTGCTATGTTGTATTTTTTATTGATCTGCGCTGCA
CTTTAAGCGTACTAAGCCGCTGTGTATCATAACCTTATTTACAGCACAAA
CACCGTAACTTCCGCAGTAGTTACGTCCGTAACTGCAGCACTTTTCATTC
CTCCCTACCCCTCAACCCACCGCTCGTTTTCGCTTCAGAACGTTTCCATC
AAAGACGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig62:737322..737930+

>mRNA_F-serratus_M_contig62.17023.1 ID=mRNA_F-serratus_M_contig62.17023.1|Name=mRNA_F-serratus_M_contig62.17023.1|organism=Fucus serratus male|type=CDS|length=516bp|location=Sequence derived from alignment at F-serratus_M_contig62:737322..737930+ (Fucus serratus male)
AGGACCGTGGGGGTTGTTGGAGGATCATCTGGAAGACACGCGTCTGGGAG
CTCCTCGTCTGCGTGGCACGCATCGGGGGGGCACGTGTCTGGGGTCCCGC
CGGGAATGGGGGAATTGGTTGGCCCGGAGACACCGCCGCCGCTGAAGGGC
CACAACCGTCGCGCTAGCCTGGTGGATCATAATCATGAAGAGCCCCCGGA
GGAGATCGCGGAGGAGCTCATGATCGGCGAGATCAAGAGGACCGTGGGGG
TTGTTGGAGGATCATCTGGAAGACACGCGTCTGGGAGCTCCTCGTCTGCG
TGGCACGCATCGGGGGGGCACGTGTCTGGGGTCCCGCCGGGAATGGGGGA
ATTGGTTGGCCCGGAGACACCGCCGCCGCTGAAGGGCCACAACCGTCGCG
CTAGCCTGGTGGATCATAATCATGAAGAGCCCCCGGAGGAGATCGCGGAG
GAGCTCATGATCGGCGAGATCAAGAACGTTTCCATCAAAGACGAGAACGT
TTCCATCAAAGACGAG
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