mRNA_F-serratus_M_contig1213.1684.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig1213.1684.1
Unique Name	mRNA_F-serratus_M_contig1213.1684.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig1213.1684.1 vs. uniprot
Match: A0A6H5KSF1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF1_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.020e-33
Identity = 61/95 (64.21%), Postives = 73/95 (76.84%), Query Frame = 1

Query:    1 QLPLALCWSITMHKSQGQTLDKAVVDLGRSEATAGLTFVCLSRAKRLTDILIEPMTFERLSKLGEKPTLRLRLREEERLRTLAGK---RYTTTGV 276
            QLPL LCW+ITMHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL D+++EPM+F+R+  LG  PT++ RL+EE RL  LA     +YT  GV
Sbjct:   17 QLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKYTDMGV 111

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BLAST of mRNA_F-serratus_M_contig1213.1684.1 vs. uniprot
Match: A0A6H5KCP5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP5_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 6.080e-33
Identity = 61/95 (64.21%), Postives = 73/95 (76.84%), Query Frame = 1

Query:    1 QLPLALCWSITMHKSQGQTLDKAVVDLGRSEATAGLTFVCLSRAKRLTDILIEPMTFERLSKLGEKPTLRLRLREEERLRTLAGK---RYTTTGV 276
            QLPL LCW+ITMHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL D+++EPM+F+R+  LG  PT++ RL+EE RL  LA     +YT  GV
Sbjct:   15 QLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKYTDMGV 109

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BLAST of mRNA_F-serratus_M_contig1213.1684.1 vs. uniprot
Match: A0A6H5JMH2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH2_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 6.260e-33
Identity = 61/95 (64.21%), Postives = 73/95 (76.84%), Query Frame = 1

Query:    1 QLPLALCWSITMHKSQGQTLDKAVVDLGRSEATAGLTFVCLSRAKRLTDILIEPMTFERLSKLGEKPTLRLRLREEERLRTLAGK---RYTTTGV 276
            QLPL LCW+ITMHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL D+++EPM+F+R+  LG  PT++ RL+EE RL  LA     +YT  GV
Sbjct:   81 QLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKYTDMGV 175

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BLAST of mRNA_F-serratus_M_contig1213.1684.1 vs. uniprot
Match: A0A6H5JUS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS2_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 8.960e-32
Identity = 61/95 (64.21%), Postives = 73/95 (76.84%), Query Frame = 1

Query:    1 QLPLALCWSITMHKSQGQTLDKAVVDLGRSEATAGLTFVCLSRAKRLTDILIEPMTFERLSKLGEKPTLRLRLREEERLRTLAGK---RYTTTGV 276
            QLPL LCW+ITMHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL D+++EPM+F+R+  LG  PT++ RL+EE RL  LA     +YT  GV
Sbjct:  188 QLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKYTDMGV 282

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BLAST of mRNA_F-serratus_M_contig1213.1684.1 vs. uniprot
Match: A0A6H5KN08_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN08_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.110e-31
Identity = 61/95 (64.21%), Postives = 73/95 (76.84%), Query Frame = 1

Query:    1 QLPLALCWSITMHKSQGQTLDKAVVDLGRSEATAGLTFVCLSRAKRLTDILIEPMTFERLSKLGEKPTLRLRLREEERLRTLAGK---RYTTTGV 276
            QLPL LCW+ITMHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL D+++EPM+F+R+  LG  PT++ RL+EE RL  LA     +YT  GV
Sbjct:   15 QLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKYTDMGV 109

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BLAST of mRNA_F-serratus_M_contig1213.1684.1 vs. uniprot
Match: A0A6H5K214_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K214_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 2.870e-31
Identity = 61/95 (64.21%), Postives = 72/95 (75.79%), Query Frame = 1

Query:    1 QLPLALCWSITMHKSQGQTLDKAVVDLGRSEATAGLTFVCLSRAKRLTDILIEPMTFERLSKLGEKPTLRLRLREEERLRTLAGK---RYTTTGV 276
            QLPL LCW+ITMHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL D+++EPM+F+R+  LG   T++ RL+EE RL  LA     RYT  GV
Sbjct:   12 QLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLIVEPMSFDRIGNLGNSSTMKGRLQEEVRLGELARTTRVRYTDMGV 106

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BLAST of mRNA_F-serratus_M_contig1213.1684.1 vs. uniprot
Match: A0A6H5KFN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFN2_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 7.160e-31
Identity = 53/76 (69.74%), Postives = 64/76 (84.21%), Query Frame = 1

Query:    1 QLPLALCWSITMHKSQGQTLDKAVVDLGRSEATAGLTFVCLSRAKRLTDILIEPMTFERLSKLGEKPTLRLRLREE 228
            QLPL LCW+ITMHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL D+++EPM+F+R+  LG  PT++ RL+EE
Sbjct:   15 QLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEE 90

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BLAST of mRNA_F-serratus_M_contig1213.1684.1 vs. uniprot
Match: A0A6H5JFG8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG8_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.440e-30
Identity = 61/95 (64.21%), Postives = 73/95 (76.84%), Query Frame = 1

Query:    1 QLPLALCWSITMHKSQGQTLDKAVVDLGRSEATAGLTFVCLSRAKRLTDILIEPMTFERLSKLGEKPTLRLRLREEERLRTLAGK---RYTTTGV 276
            QLPL LCW+ITMHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL D+++EPM+F+R+  LG  PT++ RL+EE RL  LA     +YT  GV
Sbjct:  362 QLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKYTDMGV 456

[Close]

BLAST of mRNA_F-serratus_M_contig1213.1684.1 vs. uniprot
Match: A0A6H5K4U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U7_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 1.750e-30
Identity = 61/95 (64.21%), Postives = 73/95 (76.84%), Query Frame = 1

Query:    1 QLPLALCWSITMHKSQGQTLDKAVVDLGRSEATAGLTFVCLSRAKRLTDILIEPMTFERLSKLGEKPTLRLRLREEERLRTLAGK---RYTTTGV 276
            QLPL LCW+ITMHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL D+++EPM+F+R+  LG  PT++ RL+EE RL  LA     +YT  GV
Sbjct:   79 QLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKYTDMGV 173

[Close]

BLAST of mRNA_F-serratus_M_contig1213.1684.1 vs. uniprot
Match: A0A6H5J8Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8Y8_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 3.660e-30
Identity = 61/95 (64.21%), Postives = 73/95 (76.84%), Query Frame = 1

Query:    1 QLPLALCWSITMHKSQGQTLDKAVVDLGRSEATAGLTFVCLSRAKRLTDILIEPMTFERLSKLGEKPTLRLRLREEERLRTLAGK---RYTTTGV 276
            QLPL LCW+ITMHKSQGQTL KAV+DLG  EA  GLTFVCLSRAKRL D+++EPM+F+R+  LG  PT++ RL+EE RL  LA     +YT  GV
Sbjct:  358 QLPLRLCWAITMHKSQGQTLAKAVIDLGPKEACTGLTFVCLSRAKRLVDLMVEPMSFDRIGNLGNSPTMKARLQEEVRLGELAQSTRVKYTDMGV 452

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig1213.1684.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig1213.1684.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KSF1_9PHAE	1.020e-33	64.21	Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KCP5_9PHAE	6.080e-33	64.21	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JMH2_9PHAE	6.260e-33	64.21	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JUS2_9PHAE	8.960e-32	64.21	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KN08_9PHAE	1.110e-31	64.21	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]
A0A6H5K214_9PHAE	2.870e-31	64.21	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KFN2_9PHAE	7.160e-31	69.74	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JFG8_9PHAE	1.440e-30	64.21	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5K4U7_9PHAE	1.750e-30	64.21	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J8Y8_9PHAE	3.660e-30	64.21	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig1213	contig	F-serratus_M_contig1213:207287..207583 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Opisthokonta
Seed ortholog score	80.9
Seed ortholog evalue	3.7e-13
Seed eggNOG ortholog	588596.U9U7T2
Hectar predicted targeting category	signal peptide
EggNOG OGs	2D017@1,2SCDQ@2759,3AE97@33154
Best tax level	Opisthokonta
Best eggNOG OG	NA\|NA\|NA
Exons	1
Model size	297
Cds size	297
Stop	0
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929135.5154078-CDS-F-serratus_M_contig1213:207286..207583	1622929135.5154078-CDS-F-serratus_M_contig1213:207286..207583	Fucus serratus male	CDS	F-serratus_M_contig1213 207287..207583 -
1690962719.0285041-CDS-F-serratus_M_contig1213:207286..207583	1690962719.0285041-CDS-F-serratus_M_contig1213:207286..207583	Fucus serratus male	CDS	F-serratus_M_contig1213 207287..207583 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig1213.1684.1	prot_F-serratus_M_contig1213.1684.1	Fucus serratus male	polypeptide	F-serratus_M_contig1213 207287..207583 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig1213:207287..207583-
coding sequence from alignment at F-serratus_M_contig1213:207287..207583-

protein sequence of mRNA_F-serratus_M_contig1213.1684.1

>prot_F-serratus_M_contig1213.1684.1 ID=prot_F-serratus_M_contig1213.1684.1|Name=mRNA_F-serratus_M_contig1213.1684.1|organism=Fucus serratus male|type=polypeptide|length=99bp
QLPLALCWSITMHKSQGQTLDKAVVDLGRSEATAGLTFVCLSRAKRLTDI
LIEPMTFERLSKLGEKPTLRLRLREEERLRTLAGKRYTTTGVLRNACQF

mRNA from alignment at F-serratus_M_contig1213:207287..207583-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig1213.1684.1 ID=mRNA_F-serratus_M_contig1213.1684.1|Name=mRNA_F-serratus_M_contig1213.1684.1|organism=Fucus serratus male|type=mRNA|length=297bp|location=Sequence derived from alignment at F-serratus_M_contig1213:207287..207583- (Fucus serratus male)
CAATTACCCCTGGCTCTTTGTTGGTCTATAACAATGCACAAGAGCCAAGG
GCAGACGTTGGACAAGGCCGTTGTCGACCTCGGACGGTCAGAGGCTACAG
CGGGATTGACGTTCGTGTGTCTTAGCCGCGCAAAACGCCTAACGGATATT
TTAATAGAGCCCATGACATTCGAGAGGCTTTCAAAACTCGGCGAGAAACC
GACATTGCGGCTTCGGCTACGAGAAGAAGAGCGCCTTCGAACTCTCGCGG
GGAAACGCTACACCACCACGGGGGTGTTGCGTAATGCATGTCAGTTT

Coding sequence (CDS) from alignment at F-serratus_M_contig1213:207287..207583-

>mRNA_F-serratus_M_contig1213.1684.1 ID=mRNA_F-serratus_M_contig1213.1684.1|Name=mRNA_F-serratus_M_contig1213.1684.1|organism=Fucus serratus male|type=CDS|length=594bp|location=Sequence derived from alignment at F-serratus_M_contig1213:207287..207583- (Fucus serratus male)
CAATTACCCCTGGCTCTTTGTTGGTCTATAACAATGCACAAGAGCCAAGG
GCAGACGTTGGACAAGGCCGTTGTCGACCTCGGACGGTCAGAGGCTACAG
CGGGATTGACGTTCGTGTGTCTTAGCCGCGCAAAACGCCTAACGGATATT
TTAATAGAGCCCATGACATTCGAGAGGCTTTCAAAACTCGGCGAGAAACC
GACATTGCGGCTTCGGCTACGAGAAGAAGAGCGCCTTCGAACTCTCGCGG
GGAAACGCTACACCACCACGGGGGTGTTGCGTAATGCATGTCAGTTTCAA
TTACCCCTGGCTCTTTGTTGGTCTATAACAATGCACAAGAGCCAAGGGCA
GACGTTGGACAAGGCCGTTGTCGACCTCGGACGGTCAGAGGCTACAGCGG
GATTGACGTTCGTGTGTCTTAGCCGCGCAAAACGCCTAACGGATATTTTA
ATAGAGCCCATGACATTCGAGAGGCTTTCAAAACTCGGCGAGAAACCGAC
ATTGCGGCTTCGGCTACGAGAAGAAGAGCGCCTTCGAACTCTCGCGGGGA
AACGCTACACCACCACGGGGGTGTTGCGTAATGCATGTCAGTTT