mRNA_F-serratus_M_contig1204.1619.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1204.1619.1 vs. uniprot
Match: D7FTL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTL7_ECTSI) HSP 1 Score: 127 bits (319), Expect = 9.880e-32 Identity = 62/115 (53.91%), Postives = 82/115 (71.30%), Query Frame = 1
Query: 4 NPTIFDGCSFIGNIALATGGAVDSASGQDVFNNTLFKGNEARAGGALRLGGSASIDNCSFEDNTSDLGEGPTVSNVGYMSSLTSSTFMNNVFNCDPQTFLDFNKSEDLYGTICSG 348
+PT FD CSF+GN A ATGGA +SA+GQD F +F GN+A GGALR+ G+AS++NCSF DN SD GEG +SN+G++S + F +NVF+C TFLD N S D + +C+G
Sbjct: 619 SPTTFDRCSFVGNQASATGGAFESAAGQDAFVGNVFVGNKAGTGGALRMAGTASVENCSFVDNVSDDGEGAALSNIGFISKMAHIYFSDNVFDCPSGTFLDLNASGDPFEAVCAG 733
BLAST of mRNA_F-serratus_M_contig1204.1619.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE) HSP 1 Score: 125 bits (315), Expect = 3.450e-31 Identity = 62/116 (53.45%), Postives = 83/116 (71.55%), Query Frame = 1
Query: 1 DNPTIFDGCSFIGNIALATGGAVDSASGQDVFNNTLFKGNEARAGGALRLGGSASIDNCSFEDNTSDLGEGPTVSNVGYMSSLTSSTFMNNVFNCDPQTFLDFNKSEDLYGTICSG 348
D PT FD C FIGN A++TGGA++SA+G+D N++F+GN A GGALRL G A I NCSF +NTSD GEG VSN+G++SS+T+++F N F+C TF + S D + IC+G
Sbjct: 901 DLPTTFDTCQFIGNQAISTGGAINSAAGEDAIENSVFEGNSAGTGGALRLAGEAYISNCSFRENTSDEGEGAAVSNIGFISSITNASFDGNGFDCPAGTFRNVTGSVDHFEAICNG 1016
BLAST of mRNA_F-serratus_M_contig1204.1619.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI) HSP 1 Score: 125 bits (314), Expect = 4.620e-31 Identity = 67/114 (58.77%), Postives = 81/114 (71.05%), Query Frame = 1
Query: 7 PTIFDGCSFIGNIALATGGAVDSASGQDVFNNTLFKGNEARAGGALRLGGSASIDNCSFEDNTSDLGEGPTVSNVGYMSSLTSSTFMNNVFNCDPQTFLDFNKSEDLYGTICSG 348
PT F C F N A ATGGAVDSASGQD+F +T+F+GN+A GGALRL G AS+ NCSF +N SD GEG VSNVG +S ++++TF NVFNC P TFL++ S D CSG
Sbjct: 413 PTTFSRCRFTFNRATATGGAVDSASGQDLFEDTVFRGNQAVTGGALRLAGRASLVNCSFVENLSDDGEGAAVSNVGVISEISNTTFSGNVFNCAPDTFLNYT-SGDALDEACSG 525
BLAST of mRNA_F-serratus_M_contig1204.1619.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI) HSP 1 Score: 125 bits (314), Expect = 4.670e-31 Identity = 64/115 (55.65%), Postives = 78/115 (67.83%), Query Frame = 1
Query: 4 NPTIFDGCSFIGNIALATGGAVDSASGQDVFNNTLFKGNEARAGGALRLGGSASIDNCSFEDNTSDLGEGPTVSNVGYMSSLTSSTFMNNVFNCDPQTFLDFNKSEDLYGTICSG 348
NPT FD C FI N A ATGGA+DSA+GQD F N+ F+GN A GG LRL G+AS+D CSF DN SD G VSN+G + S+ + TF NVF+CDP +LD+N S + Y C G
Sbjct: 649 NPTTFDHCHFIDNRATATGGAIDSAAGQDAFVNSTFQGNRAGTGGGLRLAGTASLDTCSFVDNISDDQGGAAVSNIGSLLSVENITFSGNVFDCDPGMYLDYNASGNPYEAACGG 763
BLAST of mRNA_F-serratus_M_contig1204.1619.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI) HSP 1 Score: 120 bits (302), Expect = 1.960e-29 Identity = 60/117 (51.28%), Postives = 82/117 (70.09%), Query Frame = 1
Query: 1 DNPTIFDGCSFIGNIALATGGAVDSASGQDVFNNTLFKGNEARAGGALRLGGSASIDNCSFEDNTSDLGEGPTVSNVGYMSSLTSSTFMNNVFNCDPQTFLDF-NKSEDLYGTICSG 348
DNPT FD C F+ N +TGGA++SA+G+D FN ++F+GN A GGALRL G+A NCSF NT+D GEG VSN+GY+S++ S+ F N F+C +LDF +S+D + +CSG
Sbjct: 1011 DNPTTFDRCRFVDNQGASTGGAIESAAGKDAFNGSIFEGNSAGTGGALRLAGAAYFFNCSFVGNTADEGEGAAVSNIGYISAVESNFFSGNRFDCRSSMYLDFIQQSDDPFEVMCSG 1127
BLAST of mRNA_F-serratus_M_contig1204.1619.1 vs. uniprot
Match: A0A6H5KR67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR67_9PHAE) HSP 1 Score: 120 bits (300), Expect = 3.530e-29 Identity = 60/101 (59.41%), Postives = 76/101 (75.25%), Query Frame = 1
Query: 7 PTIFDGCSFIGNIALATGGAVDSASGQDVFNNTLFKGNEARAGGALRLGGSASIDNCSFEDNTSDLGEGPTVSNVGYMSSLTSSTFMNNVFNCDPQTFLDF 309
PT F C F N ATGGAVDSASGQD+F +T+F+GN+A GGALRL G AS++NCSF +N SD GEG VSNVG +S +++++F NVFNC P TFL++
Sbjct: 407 PTTFSRCRFTYNRETATGGAVDSASGQDLFEDTVFRGNQAVTGGALRLAGRASLENCSFVENLSDEGEGAAVSNVGIISEISNTSFSGNVFNCAPDTFLNY 507
BLAST of mRNA_F-serratus_M_contig1204.1619.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI) HSP 1 Score: 120 bits (300), Expect = 3.700e-29 Identity = 61/101 (60.40%), Postives = 76/101 (75.25%), Query Frame = 1
Query: 7 PTIFDGCSFIGNIALATGGAVDSASGQDVFNNTLFKGNEARAGGALRLGGSASIDNCSFEDNTSDLGEGPTVSNVGYMSSLTSSTFMNNVFNCDPQTFLDF 309
PT F C F N A ATGGAVDSASGQD+F +T+F+GN+A GGALRL G AS+ NCSF +N SD GEG VSNVG +S +++++F NVFNC P TFL++
Sbjct: 2326 PTTFSRCRFTFNRATATGGAVDSASGQDLFEDTVFRGNQAVTGGALRLAGRASLVNCSFVENISDEGEGAAVSNVGVISEISNTSFSGNVFNCAPDTFLNY 2426
BLAST of mRNA_F-serratus_M_contig1204.1619.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI) HSP 1 Score: 119 bits (297), Expect = 9.070e-29 Identity = 59/114 (51.75%), Postives = 80/114 (70.18%), Query Frame = 1
Query: 7 PTIFDGCSFIGNIALATGGAVDSASGQDVFNNTLFKGNEARAGGALRLGGSASIDNCSFEDNTSDLGEGPTVSNVGYMSSLTSSTFMNNVFNCDPQTFLDFNKSEDLYGTICSG 348
PT F+ C F N A+ATGGAVD+A+GQD F N++F+GN A GGALRL G+A ++NCSF +N SD G G VSN+G++SS+++ +F NV+ C FL+ +S LY IC G
Sbjct: 370 PTTFEQCRFTSNRAIATGGAVDTAAGQDKFVNSVFEGNTAGTGGALRLAGTAEVNNCSFVENVSDDGGGAAVSNIGFVSSVSNLSFSRNVYGCQEGMFLECEESGTLYEAICDG 483
BLAST of mRNA_F-serratus_M_contig1204.1619.1 vs. uniprot
Match: A0A6H5K1P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1P8_9PHAE) HSP 1 Score: 111 bits (278), Expect = 3.360e-26 Identity = 57/121 (47.11%), Postives = 80/121 (66.12%), Query Frame = 1
Query: 1 DNPTIFDGCSFIGNIALATGGAVDSASGQDVFNNTLFKGNEARAGGALRLGGSASIDNCSFEDNTSDLGEGPTVSNVGYMSSLTSSTFMNNVFNCDPQTFLDFNK-----SEDLYGTICSG 348
DNPT FD C F+ N +TGGA++SA+G+D FN ++F+GN A GGALRL GS NC+F NT+D GEG VSN+GY+S + ++ F N F+C + +LDF + S+ + +CSG
Sbjct: 737 DNPTTFDRCRFVDNQGASTGGAIESAAGKDAFNGSIFEGNSAGTGGALRLAGSEYFFNCTFVGNTADDGEGAAVSNIGYISEMENTFFSGNRFDCRSRMYLDFIQVRTFASDYPFEVMCSG 857
BLAST of mRNA_F-serratus_M_contig1204.1619.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI) HSP 1 Score: 108 bits (269), Expect = 5.580e-25 Identity = 57/115 (49.57%), Postives = 75/115 (65.22%), Query Frame = 1
Query: 4 NPTIFDGCSFIGNIALATGGAVDSASGQDVFNNTLFKGNEARAGGALRLGGSASIDNCSFEDNTSDLGEGPTVSNVGYMSSLTSSTFMNNVFNCDPQTFLDFNKSEDLYGTICSG 348
NPTIF C F+ N A ATGGAV++A+GQDVF + LF GGALRL G+A+++NCSF +N S+ G G VSN+G +S + + ++ NVF+C FLDFN S D C G
Sbjct: 1458 NPTIFTRCRFVNNQAAATGGAVETAAGQDVFVDCLFXXXXXGTGGALRLAGTATLENCSFVENVSEDGGGAAVSNIGSISKMDNISYRGNVFSCALGMFLDFNASGDPNEAACDG 1572 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1204.1619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1204.1619.1 >prot_F-serratus_M_contig1204.1619.1 ID=prot_F-serratus_M_contig1204.1619.1|Name=mRNA_F-serratus_M_contig1204.1619.1|organism=Fucus serratus male|type=polypeptide|length=116bp DNPTIFDGCSFIGNIALATGGAVDSASGQDVFNNTLFKGNEARAGGALRLback to top mRNA from alignment at F-serratus_M_contig1204:210737..211675+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1204.1619.1 ID=mRNA_F-serratus_M_contig1204.1619.1|Name=mRNA_F-serratus_M_contig1204.1619.1|organism=Fucus serratus male|type=mRNA|length=939bp|location=Sequence derived from alignment at F-serratus_M_contig1204:210737..211675+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1204:210737..211675+ >mRNA_F-serratus_M_contig1204.1619.1 ID=mRNA_F-serratus_M_contig1204.1619.1|Name=mRNA_F-serratus_M_contig1204.1619.1|organism=Fucus serratus male|type=CDS|length=696bp|location=Sequence derived from alignment at F-serratus_M_contig1204:210737..211675+ (Fucus serratus male)back to top |