mRNA_F-serratus_M_contig120.1588.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig120.1588.1
Unique NamemRNA_F-serratus_M_contig120.1588.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig120.1588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig120contigF-serratus_M_contig120:336625..337102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size479
Cds size312
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929111.868581-CDS-F-serratus_M_contig120:336624..3369361622929111.868581-CDS-F-serratus_M_contig120:336624..336936Fucus serratus maleCDSF-serratus_M_contig120 336625..336936 +
1690962710.2269707-CDS-F-serratus_M_contig120:336624..3369361690962710.2269707-CDS-F-serratus_M_contig120:336624..336936Fucus serratus maleCDSF-serratus_M_contig120 336625..336936 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929111.8809175-UTR-F-serratus_M_contig120:336936..3371021622929111.8809175-UTR-F-serratus_M_contig120:336936..337102Fucus serratus maleUTRF-serratus_M_contig120 336937..337102 +
1690962710.2399607-UTR-F-serratus_M_contig120:336936..3371021690962710.2399607-UTR-F-serratus_M_contig120:336936..337102Fucus serratus maleUTRF-serratus_M_contig120 336937..337102 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig120.1588.1prot_F-serratus_M_contig120.1588.1Fucus serratus malepolypeptideF-serratus_M_contig120 336625..336936 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig120.1588.1

>prot_F-serratus_M_contig120.1588.1 ID=prot_F-serratus_M_contig120.1588.1|Name=mRNA_F-serratus_M_contig120.1588.1|organism=Fucus serratus male|type=polypeptide|length=104bp
LRVTSHHTCALIVSSQRNKLQKRGNPFHVAGRECLISLHLSRRFKERIDV
IVVPKHYSRLTVASTELIELAFHVVQPINDCSTEKLPSLLPAKKTDHWFV
VAR*
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mRNA from alignment at F-serratus_M_contig120:336625..337102+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig120.1588.1 ID=mRNA_F-serratus_M_contig120.1588.1|Name=mRNA_F-serratus_M_contig120.1588.1|organism=Fucus serratus male|type=mRNA|length=478bp|location=Sequence derived from alignment at F-serratus_M_contig120:336625..337102+ (Fucus serratus male)
TTGAGAGTGACCAGCCATCATACTTGTGCACTAATCGTTTCTTCCCAACG
GAATAAACTTCAAAAAAGGGGAAATCCATTCCACGTCGCAGGAAGAGAAT
GCCTTATCTCTCTGCACCTCAGTAGAAGATTCAAGGAGCGAATCGACGTT
ATAGTAGTTCCGAAACACTACAGCAGGTTAACAGTGGCTTCAACGGAACT
AATTGAACTAGCATTTCACGTGGTTCAACCAATCAACGACTGCTCGACGG
AGAAACTTCCATCACTGTTGCCTGCAAAAAAAACGGATCACTGGTTTGTC
GTCGCTCGTTAAGGATGGGGATACGTGACCTTTGTTTCTACCCTCCTCAT
TTGGTTCGGCCTTTCCTATCATACCTGTCGACGGACTTTATGCATAGAAT
CTAGTCCGGACAAAAGGAACCAACGTTCCTTCCTTGTCTACCCCGATCCC
CGAAGCTTGATGTCTCAGAGCAGCGGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig120:336625..337102+

>mRNA_F-serratus_M_contig120.1588.1 ID=mRNA_F-serratus_M_contig120.1588.1|Name=mRNA_F-serratus_M_contig120.1588.1|organism=Fucus serratus male|type=CDS|length=624bp|location=Sequence derived from alignment at F-serratus_M_contig120:336625..337102+ (Fucus serratus male)
TTGAGAGTGACCAGCCATCATACTTGTGCACTAATCGTTTCTTCCCAACG
GAATAAACTTCAAAAAAGGGGAAATCCATTCCACGTCGCAGGAAGAGAAT
GCCTTATCTCTCTGCACCTCAGTAGAAGATTCAAGGAGCGAATCGACGTT
ATAGTAGTTCCGAAACACTACAGCAGGTTAACAGTGGCTTCAACGGAACT
AATTGAACTAGCATTTCACGTGGTTCAACCAATCAACGACTGCTCGACGG
AGAAACTTCCATCACTGTTGCCTGCAAAAAAAACGGATCACTGGTTTGTC
GTCGCTCGTTAATTGAGAGTGACCAGCCATCATACTTGTGCACTAATCGT
TTCTTCCCAACGGAATAAACTTCAAAAAAGGGGAAATCCATTCCACGTCG
CAGGAAGAGAATGCCTTATCTCTCTGCACCTCAGTAGAAGATTCAAGGAG
CGAATCGACGTTATAGTAGTTCCGAAACACTACAGCAGGTTAACAGTGGC
TTCAACGGAACTAATTGAACTAGCATTTCACGTGGTTCAACCAATCAACG
ACTGCTCGACGGAGAAACTTCCATCACTGTTGCCTGCAAAAAAAACGGAT
CACTGGTTTGTCGTCGCTCGTTAA
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