mRNA_F-serratus_M_contig12.1566.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig12.1566.1
Unique NamemRNA_F-serratus_M_contig12.1566.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig12.1566.1 vs. uniprot
Match: A0A6H5K7W3_9PHAE (PUM-HD domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7W3_9PHAE)

HSP 1 Score: 504 bits (1298), Expect = 6.560e-162
Identity = 266/364 (73.08%), Postives = 313/364 (85.99%), Query Frame = 2 
Query:  482 QHRPEFDTVSRAKQIWNKLRERKIPRDDRAKLVQELLRLIKGKVPAIAMKHDASRVVQTALQFGNREERLALLDELEGHLVELSQLMYSHHIVQRLFKDAKGPEEQKRLAKVFRGHGVRLATHAIGAEVVQTALISLPTASAGLIKSEFYGKEFALFDDGDSQPRSLKAVLESRPDRRAVVMDHVHEVIGKLLSKGLMKFQFAHDLLWEYFQEATPARIQEMVPRLLEPYLVLLSTRAGSMCAAVCAAYGGAKERKRMMRSLKGHVVASLVHRDSYVAVIRLVESVDDTITCQKTILAELLKPSEVS-----IGQSGVPKVGKGTTAEEWVPKGTTAPRGGLPEGGVSKADLQDEDGVTGMDVD 1558
            Q RP+FDTV R+K+IWNKLRERK+P ++RAKLVQELL+LIKGKV  IA+KHDASRVVQTALQFGN+EERL++L E+EGH+ +LSQL Y+H IV RLFK+ KG EEQKR+AK FRG  V+LATHAIGA VVQTAL SLP ASA LIKSEFYGKE+ALF D D+QP SLKAVL++RPDRRAVVM HV+ VI KLLSKGLMKF+FAHDLLWEY QEATP ++QE+VP+L++ Y++LLSTR GSM AA+CAA+GGAKERKRMMR+LKG+V ASL+HRD+Y+AVIRLVESVDDT+TCQK ILAELLKP EV+      G S VPK GKGT+AEEWVP+GTTAP+G   +GGV+ A     DGVTGMDV+
Sbjct:  143 QQRPQFDTVKRSKEIWNKLRERKVPPEERAKLVQELLQLIKGKVMDIALKHDASRVVQTALQFGNQEERLSILTEIEGHIAQLSQLTYAHFIVLRLFKEIKGAEEQKRVAKTFRGQTVKLATHAIGARVVQTALDSLPVASAALIKSEFYGKEYALFTD-DNQPHSLKAVLKARPDRRAVVMAHVNGVIAKLLSKGLMKFEFAHDLLWEYMQEATPVQMQELVPQLVDSYILLLSTRPGSMAAAMCAAHGGAKERKRMMRALKGYVAASLMHRDAYIAVIRLVESVDDTVTCQKAILAELLKPKEVTPKTTPAGNS-VPKAGKGTSAEEWVPRGTTAPKGNS-DGGVAAAG----DGVTGMDVE 499
[Close]
BLAST of mRNA_F-serratus_M_contig12.1566.1 vs. uniprot
Match: D7FHP3_ECTSI (PUM-HD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHP3_ECTSI)

HSP 1 Score: 444 bits (1143), Expect = 2.050e-139
Identity = 241/359 (67.13%), Postives = 287/359 (79.94%), Query Frame = 2 
Query:  482 QHRPEFDTVSRAKQIWNKLRERKIPRDDRAKLVQELLRLIKGKVPAIAMKHDASRVVQTALQFGNREERLALLDELEGHLVELSQLMYSHHIVQRLFKDAKGPEEQKRLAKVFRGHGVRLATHAIGAEVVQTALISLPTASAGLIKSEFYGKEFALFDDGDSQPRSLKAVLESRPDRRAVVMDHVHEVIGKLLSKGLMKFQFAHDLLWEYFQEATPARIQEMVPRLLEPYLVLLSTRAGSMCAAVCAAYGGAKERKRMMRSLKGHVVASLVHRDSYVAVIRLVESVDDTITCQKTILAELLKPSEVSIGQSGVPKVGKGTTAEEWVPKGTTAPRGGLPEGGVSKADLQDEDGVTGMDVD 1558
            Q RP+F+TV R+K+IWNKLRERK+P ++RAKLVQELL+LIKGKV  IA+KHDASRVVQTALQFGN+EERL++L E+EGH+ +LSQL Y+H IV RLFK+ KG EEQKR+AK FRG  V+LATHAIGA VVQTAL SLP ASA LIKSEFYGKE+ALF D D+QP SLKAVL++RPDRRAVVM HV+ VI KLLSKGLMKF+FAHDLLWEY QEATP ++QE+VP+L++ Y++LLSTR GSM AA+CAA+GGAKERKRMMR+LKG+V ASL H D       +V+  D            L+ P   + G   VPK GKGT+AEEWVP+GTTAP+G  PE GV+ A     DGVTGMDV+
Sbjct:  144 QQRPQFNTVKRSKEIWNKLRERKVPPEERAKLVQELLQLIKGKVMDIALKHDASRVVQTALQFGNQEERLSILTEIEGHIAQLSQLTYAHFIVLRLFKEIKGAEEQKRVAKTFRGQTVKLATHAIGARVVQTALDSLPVASAALIKSEFYGKEYALFTD-DNQPHSLKAVLKARPDRRAVVMAHVNGVITKLLSKGLMKFEFAHDLLWEYMQEATPVQMQELVPQLVDSYMLLLSTRPGSMAAAMCAAHGGAKERKRMMRALKGYVAASLTHSD-------VVKQAD-----------HLVAPKTTAAGNI-VPKAGKGTSAEEWVPRGTTAPKGN-PERGVAAAG----DGVTGMDVE 477
[Close]
BLAST of mRNA_F-serratus_M_contig12.1566.1 vs. uniprot
Match: A0A835Z7T9_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7T9_9STRA)

HSP 1 Score: 366 bits (939), Expect = 9.690e-109
Identity = 198/356 (55.62%), Postives = 253/356 (71.07%), Query Frame = 2 
Query:  464 LKLERQQHRPEFDTVSRAKQIWNKLRERKIPRDDRAKLVQELLRLIKGKVPAIAMKHDASRVVQTALQFGNREERLALLDELEGHLVELSQLMYSHHIVQRLFKDAKGPEEQKRLAKVFRGHGVRLATHAIGAEVVQTALISLPTASAGLIKSEFYGKEFALFDDG--DSQPRSLKAVLESRPDRRAVVMDHVHEVIGKLLSKGLMKFQFAHDLLWEYFQEATP-----ARIQEMVPRLLEPYLVLLSTRAGSMCAAVCAAYGGAKERKRMMRSLKGHVVASLVHRDSYVAVIRLVESVDDTITCQKTILAELLKP--SEVSIGQSGVP------KVGKGTTAEEWVPKGTTAPRG 1486
            LK ERQ HRP+ DTV RAK++WNKLRERKI  + RA LV+EL++L++GKV  I+MKHDASRVVQ+A+ FG+  +R  +L ELEGHLVELSQL Y+H IV +L + A+G EEQ+R+ K  RGH  +LATH+IGA V+Q A+  LP+A A  +++E YG E ALF D   D  PR+LK V+  RPDRRA+V++ V   +GK+  KGL+ F FAH LLWEY  E        A I +MVP +++ Y+ LLSTR GS  AA+CAAYG AK+RKRMM+  KG V  SL+HRD+Y+AV+RLV SVDDT+TCQK++LAELL P    V+   +GV       K G+G TAE WVPKG     G
Sbjct:  153 LKKERQAHRPDNDTVVRAKELWNKLRERKITEEQRAPLVRELMQLLRGKVYKISMKHDASRVVQSAVTFGSNTDRDLILTELEGHLVELSQLQYAHFIVLKLLQRARGAEEQRRVTKDLRGHVAKLATHSIGARVIQQAMDMLPSARAAQLRAELYGPEHALFADMAFDKAPRNLKQVIALRPDRRAIVLEGVKRTLGKIAQKGLLSFAFAHSLLWEYMSEVNVNSDGGAAIADMVPTVIDGYMALLSTRDGSRAAALCAAYGSAKDRKRMMKGFKGFVGTSLMHRDAYLAVLRLVASVDDTVTCQKSVLAELLVPLPRPVAAAVTGVTASGAAVKPGEGVTAEAWVPKGVARSSG 508
[Close]
BLAST of mRNA_F-serratus_M_contig12.1566.1 vs. uniprot
Match: A0A4D9CTP5_9STRA (PUM-HD domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CTP5_9STRA)

HSP 1 Score: 253 bits (647), Expect = 7.480e-69
Identity = 140/322 (43.48%), Postives = 207/322 (64.29%), Query Frame = 2 
Query:  443 PSNKKRRLKLERQQHRPEFDTVSRAKQIWNKLRERKIPRDDRAKLVQELLRLIKGKVPAIAMKHDASRVVQTALQFGNREERLALLDELEGHLVELSQLMYSHHIVQRLFK-DAKGPEEQKRLAKVFRGHGVRLATHAIGAEVVQTALISLPTASAGLIKSEFYGKEFALF--DDGDSQPRSLKAVLESRPDRRAVVMDHVHEVIGKLLSKGLMKFQFAHDLLWEYFQEATPARIQEMVPRLLEPYLVLLSTRAGSMCAAVCAAYGGAKERKRMMRSLKGHVVASLVHRDSYVAVIRLVESVDDTITCQKTILAELLKPSEV 1399
            P+NKKR +K ER + RP FD V+RAK IW   R +++ +D+R K+ +EL  LIKGK+  IA+KHDA+RVVQ AL+ GNR ++ A + EL  +L+E S++ Y+H IV RL    A  P E+KR+++VF G    LATHA+GA+V++    + P      +++E YG+E  L   D    Q R L A+L   P RR  V+ +V  +I K+L K L    F  +L+WEY   A P  ++E+VP LL+  L+L  TR G    A CAAYG  K+RK+M+++LKG+VV +L+H+D+Y+ ++RL + +DDT+   K +  ELL+ + V
Sbjct:   25 PANKKRHVKYERAKARPAFDLVARAKAIWAIFRSKRLGKDEREKMSEELYSLIKGKLHQIAVKHDAARVVQAALKHGNRIQQEAYITELLEYLLEFSKVQYAHFIVLRLLDVTASLPAERKRVSRVFTGKVHTLATHAVGAKVLEGIFSTYPKQDTQALRAELYGRETTLLLGDPTGPQGRDLAAILRELPGRRERVLSNVLGMIQKMLVKDLAVLPFVQELIWEYTCNAGPVLVRELVPTLLDYLLLLTGTRPGCKALAECAAYGTPKDRKKMLKALKGYVVPTLLHKDAYLLILRLADVIDDTVAFNKAVWQELLERNAV 346
[Close]
BLAST of mRNA_F-serratus_M_contig12.1566.1 vs. uniprot
Match: A0A7S4QEX1_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QEX1_9STRA)

HSP 1 Score: 243 bits (621), Expect = 1.580e-66
Identity = 135/329 (41.03%), Postives = 203/329 (61.70%), Query Frame = 2 
Query:  416 GGSAEEDSLPSNKKRRLKLERQQHRPEFDTVSRAKQIWNKLRERKIPRDDRAKLVQELLRLIKGKVPAIAMKHDASRVVQTALQFGNREERLALLDELEGHLVELSQLMYSHHIVQRLFKDAKGPEEQKRL-AKVFRGHGVRLATHAIGAEVVQTALISLPTASAGLIKSEFYGKEFALFDDG-----DSQPRSLKAVLESR-PDRRAVVMDHVHEVIGKLLSKGLMKFQFAHDLLWEYFQEATPARIQEMVPRLLEPYLVLLSTRAGSMCAAVCAAYGGAKERKRMMRSLKGHVVASLVHRDSYVAVIRLVESVDDTITCQKTILAEL 1381
            GG+ E++   + +KR +K ERQ HR   D V  AK IWNKLR R   +++ + +   L+ L++GK+  +A++HDASRVVQ A+QFGN ++R  +  EL   + EL++  Y+H +V +L K      E  RL  K  +GH  +LA HA+GA VV+    + P  S  L+K E YG +F LF DG      +   +L++V ++  P ++   ++HVH ++ K + KGL  F +   L  EY   ATP  I+ + P +++  + +LSTRAG+   A CAAYG  K+RK +MRSLKG+  +SL+HRD+Y+AV+RL + VDDT+T  K +L EL
Sbjct:   16 GGNNEKEQSSTRQKRAMKQERQSHRRHADAVVEAKSIWNKLRLRTNTKEETSAMADNLMGLLRGKMVEVALQHDASRVVQAAVQFGNEKQRREIAKELGSKISELAKSQYAHFVVLKLIKYCVRDGEAVRLIVKSLKGHISKLAVHAVGARVVELLFSTFPPKSTTLLKQEMYGPQFTLFTDGALSGGTAASPTLQSVFKTATPSQKKSALEHVHGLLQKGIDKGLFGFTYYQSLFCEYVIAATPNDIRSIAPSVVDHSIHMLSTRAGARVVAECAAYGTVKDRKNIMRSLKGYTRSSLLHRDAYIAVLRLADVVDDTVTLDKNVLVEL 344
[Close]
BLAST of mRNA_F-serratus_M_contig12.1566.1 vs. uniprot
Match: A0A7R9U7V4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7V4_9STRA)

HSP 1 Score: 239 bits (611), Expect = 1.470e-64
Identity = 127/319 (39.81%), Postives = 201/319 (63.01%), Query Frame = 2 
Query:  500 DTVSRAKQIWNKLRERKIPRDDRAKLVQELLRLIKGKVPAIAMKHDASRVVQTALQFGNREERLALLDELEGHLVELSQLMYSHHIVQRLFKDAKGP---EEQKRLAKVFRGHGVRLATHAIGAEVVQTALISLPTASAGLIKSEFYGKEFALFDDGDSQ-PRSLKAVLESRPDRRAVVMDHVHEVIGKLLSKGLMKFQFAHDLLWEYFQEATPARIQEMVPRLLEPYLVLLSTRAGSMCAAVCAAYGGAKERKRMMRSLKGHVVASLVHRDSYVAVIRLVESVDDTITCQKTILAELLKPSEVSIGQSGVPKVGKGTT 1444
            + VSR  ++WN+LR+R++  +DR KLV E+  L++GK  A+++KHD SRVVQ  + FG  E+   +L E+E  + +L    Y+H +V +L K    P   + ++R+ K+  GH +RL  H++GA VV+TAL  LP   A  +  EFYG+E  L   GD++    L  +L+ RPDRR  ++  V  ++ K++ KGL +F F  +LL EY + A PA+I ++VP L E  + LL +R GS  AA+ AAY GA+ER++M+++LKGHV + + HRD+Y+ +++LV   DDT++ +K +LAE+    +     +G  K  + TT
Sbjct:   58 EEVSRLLRLWNQLRDRQVSSEDRRKLVNEVASLMRGKYAAMSLKHDVSRVVQAVVSFGTAEQVDEVLVEVEPRIFDLCVSPYAHFLVIKLLKSVAQPRRRDSRRRMVKLLSGHMLRLGVHSVGARVVETALEELPKPDARRLNREFYGREHLLATGGDAEGSHRLDGLLKLRPDRRETILTRVWGLLSKMIDKGLCQFVFVQELLCEYLECAGPAQIAKVVPSLAEHAVALLVSRNGSKAAAMLAAYSGARERRKMIKALKGHVKSCIFHRDAYMFLLKLVSVTDDTVSVKKNLLAEIFAKEDEEFTATGEEKAAEHTT 376
[Close]
BLAST of mRNA_F-serratus_M_contig12.1566.1 vs. uniprot
Match: A0A7S2SB37_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SB37_9STRA)

HSP 1 Score: 233 bits (594), Expect = 1.480e-63
Identity = 126/327 (38.53%), Postives = 194/327 (59.33%), Query Frame = 2 
Query:  422 SAEEDSLPSNKKRRLKLERQQHRPEFDTVSRAKQIWNKLRERKIPRDDRAKLVQELLRLIKGKVPAIAMKHDASRVVQTALQFGNREERLALLDELEGHLVELSQLMYSHHIVQRLFKDA-KGPEEQKRLAKVFRGHGVRLATHAIGAEVVQTALISLPTASAGLIKSEFYGKEFALFDDGD------SQPRSLKAVLESRPDRRAVVMDHVHEVIGKLLSKGLMKFQFAHDLLWEYFQEATPARIQEMVPRLLEPYLVLLSTRAGSMCAAVCAAYGGAKERKRMMRSLKGHVVASLVHRDSYVAVIRLVESVDDTITCQKTILAEL 1381
            S EE    SNKKR LK ERQ HR   D V   K++WNK+R +   +++  ++         GK   +AM+HDASR+VQ A+QFGN ++RL ++ EL   + ELS++ Y+H  + ++ K   +  +  K + K  +GH  +L  HA+GA VV+  L + P      +K E YG +FALF  GD      +   +L+++++ +PD++ V + ++  +I K + K L  F +   L  EY    +P  I+ + P + +  + LLSTR+G+   A CAAY   KERKRMMRSLKG+  +SL H D+Y+A++RL++  DDT+T QK +L EL
Sbjct:   34 SLEEGQSASNKKRALKHERQSHRKHADIVVSGKELWNKMRLKSNTKEEITEMXXXXXXSFTGKFNDVAMQHDASRIVQAAIQFGNEDQRLIIVKELSSSISELSKVQYAHFAILKMIKYCVRNKDAMKIIVKSLKGHINKLCVHAVGARVVELLLATFPAKITAHLKLELYGPQFALFASGDLSASTSTNNPTLQSIIKEQPDKKEVAVQNILNIINKGIEKSLFSFAYFQRLFSEYVLAVSPNEIRAIAPSISDHAIHLLSTRSGARVVAECAAYSTPKERKRMMRSLKGYTRSSLKHADAYIALLRLIDVTDDTVTAQKLLLEEL 360
[Close]
BLAST of mRNA_F-serratus_M_contig12.1566.1 vs. uniprot
Match: A0A448Z1A3_9STRA (PUM-HD domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z1A3_9STRA)

HSP 1 Score: 222 bits (565), Expect = 1.060e-58
Identity = 131/341 (38.42%), Postives = 212/341 (62.17%), Query Frame = 2 
Query:  416 GGSAEEDSLPSNKKRRLKLERQQHRPEFDTVSRAKQIWNKLRERKIPRDDRAKLVQELLRLIKGKVPAIAMKHDASRVVQTALQFGNREERLALLDEL---EGHLVELSQLMYSHHIVQRLFKD-AKGPEEQKRLAKVFRGHGVRLATHAIGAEVVQTALISLPTASAGLIKSEFYGKEFALFDDGDSQPRSLKAVLESRPD--RRAVVMDHVHEVIGKLLSKGLMKFQFAHDLLWEYFQEATPARIQEMVPRLLEPYLVLLSTRAGSMCAAVCAAYGGAKERKRMMRSLKGHVVASLVHRDSYVAVIRLVESVDDTITCQKTILAELL-KPSEVSIGQSG 1417
            GG A E S  S +KR ++ ERQ  R   ++V+ AK +WNKLR +   ++D  KL+++++ LI+GKV  IA++HDASRVVQ A+QFG+  +R  +L+E+   EG L E++++ Y+H +  +  K  A+     K + K F+G   +LA H +GA VV++  ++LP+     +K EFYG  F+LF    +   SLK+ +E+     ++   +D V  +I K ++K    F +   L  EY + A P+ I+ +   + +  + LLSTR G+   A CA+YG  K+RKR  +SLKG+  +SL+HRD+Y+A++RLV+  DDT++ QK++L E+L KP E +  ++G
Sbjct:   40 GGEARELSS-SAQKRLVRKERQATRRHAESVTEAKALWNKLRMKTNTKEDTQKLMEKVMDLIRGKVREIALQHDASRVVQAAIQFGSDAQRKEILEEICRSEGSLGEMAKIQYAHFVSLKFIKYCARDEASVKLIVKSFKGEMPKLAVHGVGARVVESIFLNLPSKLTAPLKQEFYGPHFSLFAKDLTSAPSLKSNIENAKTETQKKSAIDFVQAIINKGMTKSFYGFTYFQQLFAEYVEVADPSEIRSISSSVADHSIHLLSTRVGTRVVAACASYGTPKDRKRSCKSLKGYTSSSLLHRDAYLALLRLVQVTDDTVSIQKSVLNEILTKPKEGNDEENG 379
[Close]
BLAST of mRNA_F-serratus_M_contig12.1566.1 vs. uniprot
Match: B5YP90_THAPS (RNA-binding protein of the pumilio family n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YP90_THAPS)

HSP 1 Score: 222 bits (566), Expect = 2.530e-58
Identity = 133/352 (37.78%), Postives = 204/352 (57.95%), Query Frame = 2 
Query:  437 SLPSNKKRRLKLERQQHRPEFDTVSRAKQIWNKLRERKIPRDDRAKLVQELLRLIKGKVPAIAMKHDASRVVQTALQFGNREERLALLDEL-------------EGH----LVELSQLMYSHHIVQRLFKD-AKGPEEQKRLAKVFRGHGVRLATHAIGAEVVQTALISLPTASAGLIKSEFYGKEFALF-------DDGDSQPR------SLKAVLESRPDRRAVVMDHVHEVIGKLLSKGLMKFQFAHDLLWEYFQEATPARIQE-MVPRLLEPYLVLLSTRAGSMCAAVCAAYGGAKERKRMMRSLKGHVVASLVHRDSYVAVIRLVESVDDTITCQKTILAELLKPSE 1396
            + PSNKKR LK ERQ HR    TV  AK+IWN+LR +    D  +KL  EL  L +GK+  +AM+HDASR+VQ  +QFGN+ ER   + EL             +GH    L EL ++ Y+H +V ++ K  A+  +  K + K  R    +LA H++G+ VV+    + P+ +   +K E YG ++ALF        DG S+        +L + +E+ PD+    + H+  ++ K L K L  F + H LL++Y   A+P  I++ + P L E  L L+STRAG+     CAAYG  K+RK+M++  KG+  +SL+HRD+Y+A++R+V+ +DDT+   K +LAEL + S+
Sbjct:   44 ATPSNKKRALKAERQSHRKHATTVRTAKEIWNELRIKTNTSDQNSKLATELYGLFEGKMMEVAMQHDASRMVQAVIQFGNKNERGETVRELCGVSGGAVQKEESKGHGTVNLAELCKIQYAHFVVLKMIKYCARDEDSVKLIVKSLRKQMTKLAVHSVGSRVVELLFATFPSKATAPLKLELYGPQYALFATSNPTPTDGKSKSSISPTLPTLASFIETNPDKLESTLTHLQTLLQKGLDKHLTGFAYFHSLLFDYVSIASPNDIRDFLTPALAEHSLHLISTRAGTKVVCECAAYGSVKDRKKMLKCFKGYTRSSLLHRDAYLAILRMVDVMDDTVLVNKMLLAELHQNSD 395
[Close]
BLAST of mRNA_F-serratus_M_contig12.1566.1 vs. uniprot
Match: A0A7S2FGZ7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FGZ7_9STRA)

HSP 1 Score: 216 bits (550), Expect = 3.810e-56
Identity = 129/357 (36.13%), Postives = 210/357 (58.82%), Query Frame = 2 
Query:  443 PSNKKRRLKLERQQHRPEFDTVSRAKQIWNKLRERKIPRDDRAKLVQELLRLIKGKVPAIAMKHDASRVVQTALQFGNREERLALLDELEGHLVELSQLMYSHHIVQRLFKDA-KGPEEQKRLAKVFRGHGVRLATHAIGAEVVQTALISLPTASAGLIKSEFYGKEFALFDD----------GDSQPRSL-KAVLESRPDRRAVVMDHVHEVIGKLLSKGLMKFQFAHDLLWEYFQEATPARIQEMVPRLLEPYLVLLSTRAGSMCAAVCAAYGGAKERKRMMRSLKGHVVASLVHRDSYVAVIRLVESVDDTITCQKTILAELL-----------KPS-EVSIGQSGVPKVGKGT 1441
            P+NKKR L+ +RQ  R  + TV+  K +WN+LR +      R  LV +L + +KG  P +A+KHDASR+VQ+ L+FG  ++RL ++ E+   LVELS+  Y+H +V +L   A + P+ Q++L K  RG+   +AT A+ A +V+ AL +L  A    ++ E YGKE+ +F D             Q  S+  A+L  +P  +  +++ +  + GK + KGL+ F++ H+LL E+      A++ E++P +L   LVLLSTR G+           AK+R++ +++LKGH V  L HRD+Y+AV+R+V+ +DDT+  Q+++LAEL             PS +   G++ +  +GKGT
Sbjct:   62 PANKKRALRFDRQSGRKHYSTVTDGKVVWNELRAKSCDPARRTTLVNDLHKALKGNYPEVALKHDASRLVQSVLEFGTSDQRLDIMGEVAPRLVELSRSTYAHFVVVKLLDLADRDPKLQQQLHKALRGNIRMMATSAVAARIVELALGNLKNAFT--LRLELYGKEYGVFTDEALSKTPAYDAKGQRNSIVAAILALKPQSKPGLLEGLAVLCGKFVKKGLLAFEYVHELLDEFVGHCDEAQMAELLPSILNNALVLLSTRPGTRVVVAALGLSIAKDRRKFLKALKGHGVQLLTHRDAYLAVLRIVDVMDDTVALQRSLLAELTTRATSDGKISANPSLDADGGKAALASMGKGT 416
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig12.1566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K7W3_9PHAE6.560e-16273.08PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FHP3_ECTSI2.050e-13967.13PUM-HD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835Z7T9_9STRA9.690e-10955.62Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
A0A4D9CTP5_9STRA7.480e-6943.48PUM-HD domain-containing protein n=2 Tax=Monodopsi... [more]
A0A7S4QEX1_9STRA1.580e-6641.03Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7R9U7V4_9STRA1.470e-6439.81Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2SB37_9STRA1.480e-6338.53Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A448Z1A3_9STRA1.060e-5838.42PUM-HD domain-containing protein n=1 Tax=Pseudo-ni... [more]
B5YP90_THAPS2.530e-5837.78RNA-binding protein of the pumilio family n=1 Tax=... [more]
A0A7S2FGZ7_9STRA3.810e-5636.13Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig12contigF-serratus_M_contig12:1116161..1126519 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score447.6
Seed ortholog evalue7.7e-123
Seed eggNOG ortholog2880.D7FHP3
Preferred namePUF8
KEGG koko:K14844
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mRNA binding
EggNOG OGsKOG2050@1,KOG2050@2759
Ec32 ortholog descriptionPumilio RNA-binding repeat protein
Ec32 orthologEc-07_006210.1
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009,ko03019
Exons12
Model size2771
Cds size1503
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig12.1566.1prot_F-serratus_M_contig12.1566.1Fucus serratus malepolypeptideF-serratus_M_contig12 1116255..1122114 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929109.7377484-UTR-F-serratus_M_contig12:1116160..11162541622929109.7377484-UTR-F-serratus_M_contig12:1116160..1116254Fucus serratus maleUTRF-serratus_M_contig12 1116161..1116254 +
1690962709.1706514-UTR-F-serratus_M_contig12:1116160..11162541690962709.1706514-UTR-F-serratus_M_contig12:1116160..1116254Fucus serratus maleUTRF-serratus_M_contig12 1116161..1116254 +
1622929109.8403957-UTR-F-serratus_M_contig12:1122114..11222051622929109.8403957-UTR-F-serratus_M_contig12:1122114..1122205Fucus serratus maleUTRF-serratus_M_contig12 1122115..1122205 +
1690962709.25537-UTR-F-serratus_M_contig12:1122114..11222051690962709.25537-UTR-F-serratus_M_contig12:1122114..1122205Fucus serratus maleUTRF-serratus_M_contig12 1122115..1122205 +
1622929109.854419-UTR-F-serratus_M_contig12:1122859..11231241622929109.854419-UTR-F-serratus_M_contig12:1122859..1123124Fucus serratus maleUTRF-serratus_M_contig12 1122860..1123124 +
1690962709.2672176-UTR-F-serratus_M_contig12:1122859..11231241690962709.2672176-UTR-F-serratus_M_contig12:1122859..1123124Fucus serratus maleUTRF-serratus_M_contig12 1122860..1123124 +
1622929109.865886-UTR-F-serratus_M_contig12:1123410..11234941622929109.865886-UTR-F-serratus_M_contig12:1123410..1123494Fucus serratus maleUTRF-serratus_M_contig12 1123411..1123494 +
1690962709.2748132-UTR-F-serratus_M_contig12:1123410..11234941690962709.2748132-UTR-F-serratus_M_contig12:1123410..1123494Fucus serratus maleUTRF-serratus_M_contig12 1123411..1123494 +
1622929109.877646-UTR-F-serratus_M_contig12:1125278..11255931622929109.877646-UTR-F-serratus_M_contig12:1125278..1125593Fucus serratus maleUTRF-serratus_M_contig12 1125279..1125593 +
1690962709.2835248-UTR-F-serratus_M_contig12:1125278..11255931690962709.2835248-UTR-F-serratus_M_contig12:1125278..1125593Fucus serratus maleUTRF-serratus_M_contig12 1125279..1125593 +
1622929109.8894334-UTR-F-serratus_M_contig12:1126100..11265191622929109.8894334-UTR-F-serratus_M_contig12:1126100..1126519Fucus serratus maleUTRF-serratus_M_contig12 1126101..1126519 +
1690962709.2907212-UTR-F-serratus_M_contig12:1126100..11265191690962709.2907212-UTR-F-serratus_M_contig12:1126100..1126519Fucus serratus maleUTRF-serratus_M_contig12 1126101..1126519 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929109.7509794-CDS-F-serratus_M_contig12:1116254..11167101622929109.7509794-CDS-F-serratus_M_contig12:1116254..1116710Fucus serratus maleCDSF-serratus_M_contig12 1116255..1116710 +
1690962709.180588-CDS-F-serratus_M_contig12:1116254..11167101690962709.180588-CDS-F-serratus_M_contig12:1116254..1116710Fucus serratus maleCDSF-serratus_M_contig12 1116255..1116710 +
1622929109.7639751-CDS-F-serratus_M_contig12:1117604..11177361622929109.7639751-CDS-F-serratus_M_contig12:1117604..1117736Fucus serratus maleCDSF-serratus_M_contig12 1117605..1117736 +
1690962709.1878433-CDS-F-serratus_M_contig12:1117604..11177361690962709.1878433-CDS-F-serratus_M_contig12:1117604..1117736Fucus serratus maleCDSF-serratus_M_contig12 1117605..1117736 +
1622929109.7738328-CDS-F-serratus_M_contig12:1117986..11182231622929109.7738328-CDS-F-serratus_M_contig12:1117986..1118223Fucus serratus maleCDSF-serratus_M_contig12 1117987..1118223 +
1690962709.1950336-CDS-F-serratus_M_contig12:1117986..11182231690962709.1950336-CDS-F-serratus_M_contig12:1117986..1118223Fucus serratus maleCDSF-serratus_M_contig12 1117987..1118223 +
1622929109.7826135-CDS-F-serratus_M_contig12:1119492..11195841622929109.7826135-CDS-F-serratus_M_contig12:1119492..1119584Fucus serratus maleCDSF-serratus_M_contig12 1119493..1119584 +
1690962709.2026808-CDS-F-serratus_M_contig12:1119492..11195841690962709.2026808-CDS-F-serratus_M_contig12:1119492..1119584Fucus serratus maleCDSF-serratus_M_contig12 1119493..1119584 +
1622929109.7925148-CDS-F-serratus_M_contig12:1120470..11206001622929109.7925148-CDS-F-serratus_M_contig12:1120470..1120600Fucus serratus maleCDSF-serratus_M_contig12 1120471..1120600 +
1690962709.2105489-CDS-F-serratus_M_contig12:1120470..11206001690962709.2105489-CDS-F-serratus_M_contig12:1120470..1120600Fucus serratus maleCDSF-serratus_M_contig12 1120471..1120600 +
1622929109.807389-CDS-F-serratus_M_contig12:1121067..11212251622929109.807389-CDS-F-serratus_M_contig12:1121067..1121225Fucus serratus maleCDSF-serratus_M_contig12 1121068..1121225 +
1690962709.2185974-CDS-F-serratus_M_contig12:1121067..11212251690962709.2185974-CDS-F-serratus_M_contig12:1121067..1121225Fucus serratus maleCDSF-serratus_M_contig12 1121068..1121225 +
1622929109.8169172-CDS-F-serratus_M_contig12:1121453..11215501622929109.8169172-CDS-F-serratus_M_contig12:1121453..1121550Fucus serratus maleCDSF-serratus_M_contig12 1121454..1121550 +
1690962709.2307837-CDS-F-serratus_M_contig12:1121453..11215501690962709.2307837-CDS-F-serratus_M_contig12:1121453..1121550Fucus serratus maleCDSF-serratus_M_contig12 1121454..1121550 +
1622929109.827398-CDS-F-serratus_M_contig12:1121913..11221141622929109.827398-CDS-F-serratus_M_contig12:1121913..1122114Fucus serratus maleCDSF-serratus_M_contig12 1121914..1122114 +
1690962709.244746-CDS-F-serratus_M_contig12:1121913..11221141690962709.244746-CDS-F-serratus_M_contig12:1121913..1122114Fucus serratus maleCDSF-serratus_M_contig12 1121914..1122114 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig12.1566.1

>prot_F-serratus_M_contig12.1566.1 ID=prot_F-serratus_M_contig12.1566.1|Name=mRNA_F-serratus_M_contig12.1566.1|organism=Fucus serratus male|type=polypeptide|length=501bp
MEGGRRSRGRGRGASRGGGRGRIHSANGAGARPAARSSKQDGKTAADEGG
SGSKRKMSSGSISRGRGERKDNRSGRGRGQRGGRIGAATKGSGRGSKGVV
KGDGVNGGGSAEEDSLPSNKKRRLKLERQQHRPEFDTVSRAKQIWNKLRE
RKIPRDDRAKLVQELLRLIKGKVPAIAMKHDASRVVQTALQFGNREERLA
LLDELEGHLVELSQLMYSHHIVQRLFKDAKGPEEQKRLAKVFRGHGVRLA
THAIGAEVVQTALISLPTASAGLIKSEFYGKEFALFDDGDSQPRSLKAVL
ESRPDRRAVVMDHVHEVIGKLLSKGLMKFQFAHDLLWEYFQEATPARIQE
MVPRLLEPYLVLLSTRAGSMCAAVCAAYGGAKERKRMMRSLKGHVVASLV
HRDSYVAVIRLVESVDDTITCQKTILAELLKPSEVSIGQSGVPKVGKGTT
AEEWVPKGTTAPRGGLPEGGVSKADLQDEDGVTGMDVDESPEEGGVKRKR
*
back to top

mRNA from alignment at F-serratus_M_contig12:1116161..1126519+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig12.1566.1 ID=mRNA_F-serratus_M_contig12.1566.1|Name=mRNA_F-serratus_M_contig12.1566.1|organism=Fucus serratus male|type=mRNA|length=10359bp|location=Sequence derived from alignment at F-serratus_M_contig12:1116161..1126519+ (Fucus serratus male)
CTGCATCCTGCCGGCTGTCAGTAAATTTGCGGAGGCTCGCGAGGTGCAAG
CTGCTCAGGATCGTCCAGAATTCGTCCGTACATTCAAATCTGAAATGGAA
GGTGGAAGAAGGAGCCGTGGACGTGGTCGAGGAGCGTCCAGAGGAGGAGG
AAGAGGCAGGATCCATTCAGCTAATGGTGCTGGTGCCCGTCCTGCTGCTC
GCTCCAGTAAGCAGGATGGGAAAACGGCAGCCGACGAGGGAGGCTCTGGC
AGTAAGCGCAAAATGTCATCGGGTAGCATATCTCGAGGACGAGGTGAAAG
GAAAGATAATAGAAGTGGAAGGGGAAGAGGTCAGAGAGGAGGCCGTATTG
GGGCGGCAACTAAAGGAAGTGGGAGGGGCAGCAAGGGGGTCGTCAAAGGT
GACGGTGTCAACGGCGGGGGCAGCGCCGAGGAGGATAGCCTGCCTTCCAA
CAAAAAGCGCCGGCTGAAGCTGGAGAGGCAGCAGCACCGCCCCGAGTTCG
ATACCGTGTCGAGGGCGAAGCAGATCTGGAATAAGCTCAGGGAGCGCAAG
GTGCGATGGGGTGACGTTGCAGTTTCAGCTACGACGGACAATGTATCGCG
TGATGTAGCGTGAGACGCACGAGCGCCTAAAACCACGCTTTGACAGTACT
ATATACCTGGTATTGACCTGCTCGAGAAGAGAGCTGAGACTGTAAGATCC
CAGTAGGTGCTATCCCGCGGAGGTGTCTTGGCTTTCTGTCGGGCTCTTAA
GGCGTGGTAAGCCCGGCAGCGGTCAGGCGCACGCGAAAGAAAACGATGGT
CATGTGCCGAACCTTGCGTATATGATCCCTTTCCTCAAGGAAGATACGGC
TTGTACCGATGTTGCGTTTGGCCGGTCGCCCTGGTGGTTCAGTTGACAAC
CTCGAAACCTTCTGACGTTGGGACGGGAGTTCGAATCCCGATTCTGTCAC
ACAAACTTGGATCACACACACACACACAAAAAAAAAAAATGCCCAACAAG
TGGAGAACGATTATTTCGTTAGTACACAGAAATTCGACTCCACGATCAAC
GAGGGAAAGGAATGGTTGTCTGTATCCTTCTCGTGAGAAAAATTAAGGCA
AGCACCGCAGAAGGAAGGTGGACGAGAACTCCTGTGTGACACCGGCCGGT
ACGTCCACAAGCCTGACGCCCAGAATAAAAGGGAAGACAACACCCACCCC
CCACCCGCGACCTTATTTTTCTTGACTATTAAATATGAAAGATAAATCAC
CAATCGGGGTGAAAATGAAAATCCACAGGACTTGGCTTGACGTTGGGTCC
AAAAGTGGATTCAGCAGTGACTGTCACAGCAGGAAATATTCACGCAAGGA
TTTGTCGATGGGTTTCCTCGTGATGGTGGATTATAACCCCAAGCTTTCTT
ACTGCGGAGATCCTTCGCGGTTAAACTCTTCACCCTTTTGACAGATACCG
CGTGACGACAGGGCGAAGCTGGTCCAAGAGCTTCTGCGGCTGATCAAGGG
TAAGGTGCCCGCTATCGCGATGAAGCACGACGCCAGTCGGGTCGTTCAGA
CCGCTCTCCAGTTCGGCAACCGCGAGGTAACGGTACCCGAGCGTCAACGA
TGAAAAAAACCCCGTTCTCTTACCTCTACTCTTCCTTCATCTTACCGCAC
AATTCTCTCCTTCTCAATTCGAATAGTTCAGGTGGAGCTCGTCCGGCAAC
CCCAGCACCCAGTGGTGCCCTAGTCGGGAAGGTCGTTCTCACCAAATTTC
GATTAGCACTCAGCGGAGTCCTGGTTGGAAAGGCCGCTCTCACCGAATTT
CGATTCCCCGTTCTCACCCACGACAGGAGCGACTGGCTCTCTTGGATGAG
CTAGAGGGGCACCTCGTAGAGCTGTCGCAGCTCATGTACTCGCACCACAT
CGTGCAGCGTCTGTTCAAGGACGCGAAGGGACCCGAGGAGCAAAAACGCC
TCGCGAAGGTTTTCCGTGGACACGGGGTGCGGCTGGCGACGCACGCAATC
GGGGCGGAGGTGGTGCAGACCGCGCTGATCTCGCTGCCTACGGCGTCCGC
TGGTTTGATTAAGGTGCGTGCGCGCGCTCCTTAGACCCaACCCCCCTCCT
CCCCAGGAAAGCGCATGTAAATTTCACTCATTTCCCTATACTGTTTGAGG
TTAGTCAGAGAAAATGCATTCTCGTTGCAAAATATGTTTCGGCACCGAGC
TTGTTCATTTCCCTCACGAAGTTCTTGTGTTGGGCGGAGTGTATGTACAG
CCTGACGACGGCAGACTGAAGCCATGTCGTGTTCTCGGCGGCGTTTGAAC
GTGTAACATAGCACCCCCCTGGCGATCAGATTATGATGTCGTTGTTGTCC
ACGCGCTTCGCTCTGGCTTTCGCGTTCGCATCAGCAGCGGCGCTCTTACA
GGCTAGACGGAGTTGCCGAGAAATTAGTTGGATGTCTTATTTGGCCCCCC
TTTCCCCCTGTTGAGCAGAGGTCAAACGAGATTCGCCACCGTGTTCCAAA
TTATAGTGTATAATAGAGAGAGTGCCTTAAGTTGGCATCAGACCAGTCGT
TGAAAAAGAGGAAACAAGAACAACAACTACACCGACTCGCACTCTCTCTC
TTTTTATCTCTATCTCGTACTGGTACTCGTTTTATTGGACTGGTTACGGT
TACCCTGGCATCAATGCTGTGTAGGTACTTTTAACATGCCCACTTCATAC
CAATAGTGGGTGTGGGAAAGAGAGGCGAATATTAATTGGTCCACGGTGAC
CTGCCAAGGCAGCACTCATTCGGAACTACCTTGAGGTTTATTGACCCCGT
GCCGGCGGACTCTCGGCAGTGAAGGCCATCGGTACGCAATTGCGTGACCC
GATAAACTCGGGACTGGCCCGATGGCGTATGGCGGTTACACATTAGTAAA
TGGACGCCGCCGCGGAACTCGGGAGGAATCCCGTAATTAAGCACCAGATT
CAGCCTTGAGTATGGAGATGAGCAGACTGACGCGGGGCGGGACTGCCGAA
CCCGTCTCGCGAGACCAAATTCTCAGGCACGAACGTGGGCAGGAGAAAAA
CTATTTTTCCCTGTTCAGCTGACCACGTGCAGGATTGGCAACCTTACCCG
GTTGATCCATACTCTTGCTATATGTGTGGCCATACATACATACATACATA
CATACATACATACATACATACATACATACATACATACATACACACATACA
TACATAAAATTGGAGACTTCCGAGACTGTGTCGGCGGAATGCCGCGTGCT
TTTCCCCGGCGCATCTCTTCGCTCTCTCACCCATCGCATCTCGAATCGCG
ATTGTCAAACCGACGAACTCGTAAAAAAACAGTCGGAGTTCTACGGAAAG
GAGTTCGCCCTGTTCGACGACGGCGACAGCCAGCCCAGAAGCCTCAAGGC
AGTGCTGGAGTCGAGGCCGGACAGGTGAGAAAGAACAATCTCACGACGAC
GGTACTCGCCCCTGTCGAGCCTGTCGAGCTTCTGCGGCGAGACGGCATTG
CTTCTGTAGGGCTTTCATCCCATGACTGTTCTTTGGAGCCAAATTTCGGC
GAGGTAGGTACGAGTACCAGATACGTGGGGAAAAGCAACCTTGCAAAGGG
CAAGCCGGTGTACGGAGAAGGAGATAAGAGAGGGGACATAGAGTCTTGGT
CCGTTAGATGTGCTGTAGAGGAGGGTGTTGAGTCGGTTGTGAAATGGACA
GCCCACGTGTGCATCTGGCACATCCGCAGTCTGCCTTTCCTTGTCAGGCG
TGTCCACCCTCACCGTCTGGTTCGTGAAGTACCTGAGTTGTACGCTTGAA
TAGATCTACCCACGCTGTTGGAAGACCCTTCGAAGAAATTTCTTTGGAAG
ATATTTTCCTTGCGATTCCTAGATTAACGTCCGTGTCAGACCCATAAGCG
CGAATCCAATCGCGAGTTCGTTACAATTCCCGAATCCTGAATGATGTATT
TGACAATGCTCCAAGGAAACCTTGGTTCACGTAGGATACTCAACGCACCT
TTGAAAAAAAAGTGTTACATAAACGATGCTTGCGAAGAGACTGCAGATAC
AGTGTGAGACAATGTTATACAGCTTTGTTATACAGCTTTGGCGGGAGAAA
CGGGGGGGGTGAGCGGGGAATCCCTGTAGCGACCGTTGTCTCGCGTGGGG
GATACGAGTGCGCTCTTGTTCACCGTATCTTTTCGAAATGAGCGCCCAGT
CTGCGAAGAAAATAGATAAATCTGCGCCTGAAATTTCCTCCCGACGATTC
GTGGACATAAGGATGATCATCCCTTTTCTGTCAACTGTGGGGGGGTTTCG
CTTGCGGCAGGCGTGCCGTAGTGATGGATCACGTGCACGAAGTGATCGGC
AAGCTGCTCTCCAAGGGTCTCATGAAGTTCCAGTTTGCCCATGATCTCCT
TTGGGAGTACTTTCAGGAAGCGACTCCGGCCAGGATTCAGGTCCTGTTGG
AACTCCCCCGCGAGGCGTTTTGGCGCCCGAGAGTAGTCTAGGCCTGTGTC
GGTACTCGCGCCCACGACCGTGCGAGGAAAAACCAAGAGAGATGGCATGC
GAGGCGTTTTTCTTTACTGTCAAGCGATGTTTGTTTTTGACGCCCTCAAT
ACGAGGCATGGGGCGGCACTTGCGCTGAAACACCGTCGTTACGTCTCGCC
CTCGTGGTACTCCTTGTCATCGCCTTCGTGGTGCGGTGCATCTTACAACG
CACCAAGGGACGAGTGGCACATCCTCTTGACATTCGTACTGTTGATGTTT
GTGTAGTGTGTCTCCGCCTCTACTCAGACAGTGTTCCTCCCGTGGCCGGT
CTTTGACTCCGCCGACGCGCGACTGCTCCCCGCGTTTTCGCTTCCCATGA
CCCGCCGAATTGCCTCCTCGTATACTGGACACCGAAACACACTCACACAC
AAAATAGGAGATGGTTCCGCGGCTGTTGGAACCGTACCTTGTGCTCCTCT
CGACGAGGGCGGGGTCGATGTGCGCCGCGGTGTGCGCGGCGTACGGAGGC
GCCAAGGAGCGCAAGAGGATGATGCGCTCCCTCAAGGGCCACGTAGTTGC
CTCTCTCGTCCACAGGTGATCAGTGGTTATGAGGTTTAGGGTTTTGGTCA
TTGGTCGGGGTGGCGGGGGGATGTTGATGTTGGTGTGCCTGGTGCGGCGT
GACTTCATTTTAACAGCAACTTGAGATCGGCGAGCGCTACCGTGGGCGTC
ATGTTCGTCGTCTTTCACAGAAAATGATTTATTTTGAGATACGCGCGATG
GGAACTCCACGAGGCGTTCGTTTCTTTTATTGTATGCCTGCAGGGATTCC
TACGTGGCTGTAATACGGCTCGTTGAGTCCGTCGACGATACCATCACGTG
CCAGAAGACTATTCTCGCGGAGTTGCTGAAACCCTCGGAGGCGAGTGAGG
ACCGGGAACAGTGTAGATACAGGGTGTCAGAAGAAATGTTTTGTTTTTGT
TTTGTTTCTGCGAAAGGCGAGACACTTGTGAAAGTACAGGGGGTATCGGG
CATGACTTGACCGATGACTCCCTAAAAAATAAGTTGACGAAAAACTCTGC
TACTCAACCTATCGTTGAAAGGGCACCAAAGGGTTTCGTATTCGCTTGGT
ATGGCTGCAGCTGTGTAGTACTGAGACTGTGGCAGAGGATTGTGGATGAC
CTTAGCTTTCGACGAACCCGACGCCGGGCAAGCATGCAGCTAGGGTACGT
ACGGTGACAACAATGTGTAGTGTGCCCTCTATCATCATTCTCCTTTTGGA
CAGGTTTCCATCGGGCAGAGCGGCGTTCCCAAAGTCGGGAAGGGCACCAC
CGCCGAGGAATGGGTGCCAAAGGGTACCACCGCGCCTCGAGGGGGTCTTC
CTGAAGGAGGCGTGTCGAAAGCGGATTTGCAAGACGAGGATGGCGTTACA
GGCATGGACGTCGACGAGTCGCCAGAGGAAGGGGGGGTAAAGAGGAAAAG
GTAGACGAGTCCGCCCCGCCCGCCCTGCTCGAGGTGATGACGAGCCGCAA
CGGATGCAAGCTGCTGCTAAGGCTGTTGGCACCCGAGCACACCGGGTGAG
ACCTGAGCGTGAGAAACACGGAGCGCTGACTTAACGACACGATCACATGC
TGTTTGAGGGGTTAATGTTGTGGGGAGGTGTTGTTGTTGGCGACGATGCT
CGAAGTGCTGTGTCACTGAGCATTTTGAGGGCAAAGCACGAAAATGTTGC
CTATTTTCCCGTGGCGGGATTTCGTTTCTGAAAAGGGATAGGGATGCTCG
TATGACCCGAGAGGTAACGTGAACATAGCCCCGATCCAGCGGTGTAGTTG
TTTAAAGAAAATCAGAACAGCACCTAGACCTTTTGAGCATCCCCCGGTTA
GAGGGTTGTTTTACTAGAAAACTGCAGAAAAAACGATGAACGCCTCATCC
AGACGAGGCGCGGGAGTCACCATAAGGCGAAGATTTCGATCGATTCGATT
CATCCACATCCATCGACATTTGCACAAAAACGAAGGCCCAAACGTGTTGC
GTTTTTTTCCCTCTTTTTTGTTTTGTTTATATCACTTATTAATAGTATAG
CTCATGGACCTCATTCCATCCTGTCTTTGGTCACTAAGGATCTTCCCATC
TCTCCTCGGTTCACGCCTTACGAAGTTTTATTATCCGCTAATTTCCCGCT
TTTGTGTCATCCTTAAATGCGTACCCCCCCCCCCCCCCCCCCCCCCCAGC
TACCTCCACCCTGAAGAGCTGGAACTCCTGAAGCCAACCATGATACCCGC
CTCCACCCCAAAGACCAGCGGGAGTTCGGACGCATCTCCTGCAGCCGAAA
CAGAGGTAAAGCTGGTTCCGTCTTCCAAAAAGGAACCCTCTGTCAGACAG
CGGGAGCTTCTGGCCTACCTCAGGGAACCGCTCAGGGAGGTGTGCGCTTC
CCATGCGGGGGAGCTGATGAGGTCGAAGTTCGCCGGAGCGTTGGTGCTGC
TGGAGGCGATTCGGGTGCGCACGCTGGGTAGCTCGGGTTATGAAAAGGTC
TGGGGGGGCGGAGAGGTGTTGGTGCTGGTGTTGGTGCTCTCGTGAGACGT
ATGCCACCGGGGGGAAAAGAGGTTTTGAATTTGGATATGCAGGAGGCGTT
TTTTTATGACCTTTCTTCCGCCAACGACGATGAGATACGAGACTTTAATC
CAAAAGGCTTGTGTGCGGCGATCTCTCGGCCACATGAAACAGAGGGATTG
CTATGTGCCCCCCCCCCCTGATTCCGCACCCCAATGCGGCTCCTTCGCAG
GGCATAGGAACTCCACAGCTGATGCAGGCTGTGGCTCAGGCGGCGTGCAC
CAAGCCTATGGACGGGCAGCTCCCCATGTTCGAGGTAAGGTTAAAGCTGT
AATCAATGTGGAAGCCCGTAGGGCGTGTATACAGAGGGGAAGGGTTGTGG
GGCCCAGCGACTCCGAGAGGATTTTGGACTCTTGTACAGCTCTCAGGATT
TCCACTCTGAGAATTGGGCAACAGTCATAGTACTATTGATAGTCTTGCCG
GGTTGAGCGAGGACAGGTGAGACACGATGGAGTTTTACGAGTGCCCCCTA
GTTAGCAGGGGCAGGGATTATTTGGGTGACATTGCCTGTTGTGGTCCGAA
GCGCTCATCGCAGTGGAATTTTCGAGAGGCGGGAATCGACTGCGCGAGCT
GACGGCGGCCTCTGATTTCCCCCTGATATCAACCGATCTGTGATTTACCC
AAAATAAACCGATGGAACTTTTGGTAAGACTTTTGAGTAACCCTTTCTCT
TACTATTAATAGCTGCATACAAAAAAACAGTGTTATTGATAGCTTCTTCA
AAGATTGATGTCACCAATAAAGTTGGACTGGCAGGCCGCTTCAAAGATCT
GTCGGGGATGAGGGCGTCGTGTCACCTTCGAGTATATCTCCTCGAAGCCC
CCGCTGCGAAGAAAAACCAACCTCTACCGAAACCCCTACGGTACTGTACA
TTGAAACATTGGAAGAAAAGTGAAGAAAAACCAAGCCCTGCGTTACGTTG
TACACAGTACGTCTTTGGTGGCGTCGAGCAACTCTCCGGCAACGTCGTGC
AGCTACTTGCTACTTTCAAGGGCGTCTATCCCAAACCTTTGCACCTACAC
TCAACCGGACAGGGTCCTTGTACGCGGTTGTTGATGGTATTCACGGGGGG
AAGAGAATGGCGTGCCGTAGATCACGCCTTGAACCTCACGATTTAATTTC
TGCCGAGTCGGAAGCCATGCATGAAATCGGCACCCCCGTATTAATGCTAC
TCTTACTGGAGGGGGGGGGGGCGCAGTAAAGTTAGAGGCCTGGCTTTGCC
TTGATTGAAGTGGTTCTGCAGTATTACGCCGGTACTTTGAACATGCCCAC
TTCGTGCCAGTAGTGGGTGTGTGGGAGAAAGGCGCAAAGTAGTTGGTCCA
TGATGACCTGCCTAGGCAGCACCGGACTCTCGGCAGTGAACGCCATCGGT
ACGCAATTGCGCGACCTGATGAATTCGGGAGGAATCTCGTAAGTGGACGC
CGCCGAGGAAATCGGGAGGAATCCCGTAAGTAAGCACCAGATTCAGCCTG
AGTATGGAGATGAGCAGGCTGACGCGGGACGGCACTGCCGAACCCGTCTC
GCGAGACCAATTTATCAGGCGCGAACGGGGACAGAGAAATGTTCATTGTT
CCTGTTCAGCTGACCACGAGGAGAGCAGGATTGGCAACCTTACCACCCGG
TTGATACATACTCTTGCTGTATGTGTGACCATACATACATAAATGTGTGT
GTGTGCGTGTGTGTGTATTTATTGTTTTGTACATAACCGCGCAATACGGC
TCTGTCATCCTAGCCATTCTATGCCATTCGCATTGATCCTCCCAAGGGGG
GGGATCAGTGATACTTATTATTTGTGTATGTGTGTGTTTTGTTTCTTGGT
TTTGCAAACGTTTACCGATTTTTCAAAAAGAAAAACAGATAGGAACGAAA
TACACAAAACACAAAAGATAAAACTCATAAAGAGACAGCCACAAATCCCT
CCCAACTCACCGCAACCCCCCCGAGATTCTCCTACTGTTTAAACGTTTCG
TGAACCCAACACACATCCACACCGCTGGCTGATCTTGAGCAACGTACGGC
GATCCCATCTCCCGGCAGGACGCTGCGGGTCACCTTTTCATGAAGCAGCT
CCTCAAGCGCGAGGCGGCGGCGCAGGAAGCGGATCCCGCTGCAACCGGGG
ACGAAGGCGATTCATCCCCGCCAACCGCGCCGTCATTCGCAGAAGCGCTC
CTGGATCGCGCGGGCGGGGAGCTGGTGTCGTGGGTGGGCAGCAACCGTGG
AGCCTTCGTGGTGGCTGCGTTGGAGCAGGTGCCGAGTGCTAGCGCCCGCG
TGAGGAAGGTCCTGGGGGTGAAGGCGGCTAGGTCGAAGGTGGTGGATGGC
GCGAAGGCCGAGGGCAACAACGTGGGCGTTAAGGTAATGAAGGAGGCATT
TTGCTGTAGTAAAGGAGGCGTATGAGGCAAAAAAGGGGTTAAGGTTGAAG
ACTTGAGGGAATAAAGGAGTTAGGTTGTGAGGCAGGCATGTTTGGTAATT
TAATGGGGCGTTGCGTCAACGGAGGAGAGGCGTGTGCAGGGTGACGAAGC
AAGCGTAAATGTAATGGAGGAGGCGTTACATACTGAAGGATAATAGGGTA
ATGTCCTTCTGTTTGTGTTTACTAGAGGGAAAGGGAGAAAGTAACAAACT
GATGGATGGAAAAAATGGCGCAGATGCACGCCGATGGGATGTATCCTCGA
TTTATCGTCCGCGTGACTCCGTATAGTCCATATCCCCAGCGTGACTCCGT
GGCGCCATAGCTGCAGGGTTAAATGCCCAGTTCAACCGGAAAGCATACTG
TATTGGTTACATGTTGAGCTCTGGTCCCTAACCTCGTCTTAAAGCACGCC
TCCATCGACCAAACCCCTGCGGTGTCCGTATGAATGGCAGGTCCTCGCGG
AGCAGCTGGGGTACGGCGATTTTGGGGCAAAGGCTGCGAAGGCAGCGTCC
GACGTCGCCGAAACCTCTACAGCGAAGAATTCTGGACAAAAAAAGAAGCT
AGAGCTCTAAGAAGCTTGACCCGGCTAGACAAAGCAGCAGATTGCGAGGC
CGAGATCCGGAATCAGTAGCCTCAATAGCCTTAATAGACTTAATGTGGTG
ATGAACTGAGTCGAAGGTCTTGTGTCACCGCGATCCGGCCGATGTAGCTC
TCTCTGAGGTTTTGACGCGTTTTTTTCCTCGTCCATGTCGGGGATCTTGA
GCTATAATGGAACTTCGCCACACAGTTTTCCGGTCACGGTCATCCCCTCC
CCTATGAGAAAGGCACAAGAAAACCTTCATGCGGTCGAGGACGCATTCGC
AAATCTTCC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig12:1116161..1126519+

>mRNA_F-serratus_M_contig12.1566.1 ID=mRNA_F-serratus_M_contig12.1566.1|Name=mRNA_F-serratus_M_contig12.1566.1|organism=Fucus serratus male|type=CDS|length=3006bp|location=Sequence derived from alignment at F-serratus_M_contig12:1116161..1126519+ (Fucus serratus male)
ATGGAAGGTGGAAGAAGGAGCCGTGGACGTGGTCGAGGAGCGTCCAGAGG
AGGAGGAAGAGGCAGGATCCATTCAGCTAATGGTGCTGGTGCCCGTCCTG
CTGCTCGCTCCAGTAAGCAGGATGGGAAAACGGCAGCCGACGAGGGAGGC
TCTGGCAGTAAGCGCAAAATGTCATCGGGTAGCATATCTCGAGGACGAGG
TGAAAGGAAAGATAATAGAAGTGGAAGGGGAAGAGGTCAGAGAGGAGGCC
GTATTGGGGCGGCAACTAAAGGAAGTGGGAGGGGCAGCAAGGGGGTCGTC
AAAGGTGACGGTGTCAACGGCGGGGGCAGCGCCGAGGAGGATAGCCTGCC
TTCCAACAAAAAGCGCCGGCTGAAGCTGGAGAGGCAGCAGCACCGCCCCG
AGTTCGATACCGTGTCGAGGGCGAAGCAGATCTGGAATAAGCTCAGGGAG
CGCAAGATGGAAGGTGGAAGAAGGAGCCGTGGACGTGGTCGAGGAGCGTC
CAGAGGAGGAGGAAGAGGCAGGATCCATTCAGCTAATGGTGCTGGTGCCC
GTCCTGCTGCTCGCTCCAGTAAGCAGGATGGGAAAACGGCAGCCGACGAG
GGAGGCTCTGGCAGTAAGCGCAAAATGTCATCGGGTAGCATATCTCGAGG
ACGAGGTGAAAGGAAAGATAATAGAAGTGGAAGGGGAAGAGGTCAGAGAG
GAGGCCGTATTGGGGCGGCAACTAAAGGAAGTGGGAGGGGCAGCAAGGGG
GTCGTCAAAGGTGACGGTGTCAACGGCGGGGGCAGCGCCGAGGAGGATAG
CCTGCCTTCCAACAAAAAGCGCCGGCTGAAGCTGGAGAGGCAGCAGCACC
GCCCCGAGTTCGATACCGTGTCGAGGGCGAAGCAGATCTGGAATAAGCTC
AGGGAGCGCAAGATACCGCGTGACGACAGGGCGAAGCTGGTCCAAGAGCT
TCTGCGGCTGATCAAGGGTAAGGTGCCCGCTATCGCGATGAAGCACGACG
CCAGTCGGGTCGTTCAGACCGCTCTCCAGTTCGGCAACCGCGAGATACCG
CGTGACGACAGGGCGAAGCTGGTCCAAGAGCTTCTGCGGCTGATCAAGGG
TAAGGTGCCCGCTATCGCGATGAAGCACGACGCCAGTCGGGTCGTTCAGA
CCGCTCTCCAGTTCGGCAACCGCGAGGAGCGACTGGCTCTCTTGGATGAG
CTAGAGGGGCACCTCGTAGAGCTGTCGCAGCTCATGTACTCGCACCACAT
CGTGCAGCGTCTGTTCAAGGACGCGAAGGGACCCGAGGAGCAAAAACGCC
TCGCGAAGGTTTTCCGTGGACACGGGGTGCGGCTGGCGACGCACGCAATC
GGGGCGGAGGTGGTGCAGACCGCGCTGATCTCGCTGCCTACGGCGTCCGC
TGGTTTGATTAAGGAGCGACTGGCTCTCTTGGATGAGCTAGAGGGGCACC
TCGTAGAGCTGTCGCAGCTCATGTACTCGCACCACATCGTGCAGCGTCTG
TTCAAGGACGCGAAGGGACCCGAGGAGCAAAAACGCCTCGCGAAGGTTTT
CCGTGGACACGGGGTGCGGCTGGCGACGCACGCAATCGGGGCGGAGGTGG
TGCAGACCGCGCTGATCTCGCTGCCTACGGCGTCCGCTGGTTTGATTAAG
TCGGAGTTCTACGGAAAGGAGTTCGCCCTGTTCGACGACGGCGACAGCCA
GCCCAGAAGCCTCAAGGCAGTGCTGGAGTCGAGGCCGGACAGTCGGAGTT
CTACGGAAAGGAGTTCGCCCTGTTCGACGACGGCGACAGCCAGCCCAGAA
GCCTCAAGGCAGTGCTGGAGTCGAGGCCGGACAGGCGTGCCGTAGTGATG
GATCACGTGCACGAAGTGATCGGCAAGCTGCTCTCCAAGGGTCTCATGAA
GTTCCAGTTTGCCCATGATCTCCTTTGGGAGTACTTTCAGGAAGCGACTC
CGGCCAGGATTCAGGCGTGCCGTAGTGATGGATCACGTGCACGAAGTGAT
CGGCAAGCTGCTCTCCAAGGGTCTCATGAAGTTCCAGTTTGCCCATGATC
TCCTTTGGGAGTACTTTCAGGAAGCGACTCCGGCCAGGATTCAGGAGATG
GTTCCGCGGCTGTTGGAACCGTACCTTGTGCTCCTCTCGACGAGGGCGGG
GTCGATGTGCGCCGCGGTGTGCGCGGCGTACGGAGGCGCCAAGGAGCGCA
AGAGGATGATGCGCTCCCTCAAGGGCCACGTAGTTGCCTCTCTCGTCCAC
AGGAGATGGTTCCGCGGCTGTTGGAACCGTACCTTGTGCTCCTCTCGACG
AGGGCGGGGTCGATGTGCGCCGCGGTGTGCGCGGCGTACGGAGGCGCCAA
GGAGCGCAAGAGGATGATGCGCTCCCTCAAGGGCCACGTAGTTGCCTCTC
TCGTCCACAGGGATTCCTACGTGGCTGTAATACGGCTCGTTGAGTCCGTC
GACGATACCATCACGTGCCAGAAGACTATTCTCGCGGAGTTGCTGAAACC
CTCGGAGGGATTCCTACGTGGCTGTAATACGGCTCGTTGAGTCCGTCGAC
GATACCATCACGTGCCAGAAGACTATTCTCGCGGAGTTGCTGAAACCCTC
GGAGGTTTCCATCGGGCAGAGCGGCGTTCCCAAAGTCGGGAAGGGCACCA
CCGCCGAGGAATGGGTGCCAAAGGGTACCACCGCGCCTCGAGGGGGTCTT
CCTGAAGGAGGCGTGTCGAAAGCGGATTTGCAAGACGAGGATGGCGTTAC
AGGCATGGACGTCGACGAGTCGCCAGAGGAAGGGGGGGTAAAGAGGAAAA
GGTAGGTTTCCATCGGGCAGAGCGGCGTTCCCAAAGTCGGGAAGGGCACC
ACCGCCGAGGAATGGGTGCCAAAGGGTACCACCGCGCCTCGAGGGGGTCT
TCCTGAAGGAGGCGTGTCGAAAGCGGATTTGCAAGACGAGGATGGCGTTA
CAGGCATGGACGTCGACGAGTCGCCAGAGGAAGGGGGGGTAAAGAGGAAA
AGGTAG
back to top