mRNA_F-serratus_M_contig12.1563.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig12.1563.1
Unique NamemRNA_F-serratus_M_contig12.1563.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig12.1563.1 vs. uniprot
Match: D8LFF8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFF8_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 3.140e-32
Identity = 61/73 (83.56%), Postives = 66/73 (90.41%), Query Frame = 1 
Query:    1 MGGVSGLMSLTNYLTVGRTDRLVGLDDFDYMLLNRDIRIRNPPTAAVERMLANGRTREALEKAKADMASAEGK 219
            MGGVSGLMSLTNYLTVGRTDRL+GLDDFDYMLLNRD+RIRNPP AAV+RMLAN  TR ALE+A ADMA+A  K
Sbjct:    1 MGGVSGLMSLTNYLTVGRTDRLIGLDDFDYMLLNRDMRIRNPPQAAVDRMLANPATRSALERANADMAAAASK 73
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BLAST of mRNA_F-serratus_M_contig12.1563.1 vs. uniprot
Match: A0A6H5K0K0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K0_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 8.070e-6
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = -2 
Query:   90 MSALAFSNASLVLPFASILSTAAVGGLRMRMSRFNSM 200
            MSA A SNA LV  FASILSTAA GG+RMRMSRFNS+
Sbjct:    1 MSAFALSNADLVAGFASILSTAACGGVRMRMSRFNSL 37
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig12.1563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFF8_ECTSI3.140e-3283.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0K0_9PHAE8.070e-678.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig12contigF-serratus_M_contig12:1044390..1045666 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_006160.1
Exons2
Model size678
Cds size285
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig12.1563.1prot_F-serratus_M_contig12.1563.1Fucus serratus malepolypeptideF-serratus_M_contig12 1044783..1045666 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929109.0742836-UTR-F-serratus_M_contig12:1044389..10447821622929109.0742836-UTR-F-serratus_M_contig12:1044389..1044782Fucus serratus maleUTRF-serratus_M_contig12 1044390..1044782 -
1690962708.8524408-UTR-F-serratus_M_contig12:1044389..10447821690962708.8524408-UTR-F-serratus_M_contig12:1044389..1044782Fucus serratus maleUTRF-serratus_M_contig12 1044390..1044782 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929109.0869448-CDS-F-serratus_M_contig12:1044782..10449751622929109.0869448-CDS-F-serratus_M_contig12:1044782..1044975Fucus serratus maleCDSF-serratus_M_contig12 1044783..1044975 -
1690962708.873853-CDS-F-serratus_M_contig12:1044782..10449751690962708.873853-CDS-F-serratus_M_contig12:1044782..1044975Fucus serratus maleCDSF-serratus_M_contig12 1044783..1044975 -
1622929109.0980697-CDS-F-serratus_M_contig12:1045574..10456661622929109.0980697-CDS-F-serratus_M_contig12:1045574..1045666Fucus serratus maleCDSF-serratus_M_contig12 1045575..1045666 -
1690962708.891666-CDS-F-serratus_M_contig12:1045574..10456661690962708.891666-CDS-F-serratus_M_contig12:1045574..1045666Fucus serratus maleCDSF-serratus_M_contig12 1045575..1045666 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig12.1563.1

>prot_F-serratus_M_contig12.1563.1 ID=prot_F-serratus_M_contig12.1563.1|Name=mRNA_F-serratus_M_contig12.1563.1|organism=Fucus serratus male|type=polypeptide|length=95bp
MGGVSGLMSLTNYLTVGRTDRLVGLDDFDYMLLNRDIRIRNPPTAAVERM
LANGRTREALEKAKADMASAEGKVRGRPLVCPFLIRDDHRNPVS*
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mRNA from alignment at F-serratus_M_contig12:1044390..1045666-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig12.1563.1 ID=mRNA_F-serratus_M_contig12.1563.1|Name=mRNA_F-serratus_M_contig12.1563.1|organism=Fucus serratus male|type=mRNA|length=1277bp|location=Sequence derived from alignment at F-serratus_M_contig12:1044390..1045666- (Fucus serratus male)
ATGGGCGGCGTATCGGGCCTCATGTCGTTGACCAACTACCTCACGGTTGG
CCGCACGGACAGGCTTGTCGGTCTCGACGACTTCGACTACATGTAAGTAG
CACGCTCTCTGTGCTTTGTAAAGGTTTGGATTTTCACTAGGACGTGGCGA
GATCTGCGCCGAACGGACATTGCACACACACGGACTCTTTTATTGGTATT
TTTGTTGATCGAGATCGAGATCGAGATCGAGATCGAGATCGAGTCGTACC
CGCCTGGCACCGTTGCTGACGAGGGGTTTCGGAGTCGAAGGAACGATCAC
GTTGCCTGAAGGGGCAGTATGGCTGCGATGGTATCAATACCGTTTGTACT
ATGTCTTGGAAAGTGTGAGAAAAATCGTGTAGCTCAACTACGTATTAGTA
TTATTTGTGTTCTTCTGCGAGAGATTAGTTCACATTTGAGATTGATCGAG
CATCTCGAACCTTCAGCCCGATTTTTTCCTCTCCTTCTCTCTCTTGGCAC
ACGCAGTGGGTTGGGGTGATTGGTTCACCGTGATGTGGTGATTGAAGAGA
CGTGAGGTTTGGTCGCGACTTGTTTTCGCCGCGCGACGTATTTGCGCTGC
AGCGTGAGATCATACGACACGTGACATCGATAGTCTACAGACTTGGGACG
CTGCTGCTGCTGCTGCTGTCCCGTTCGATCACTGGCGACAGGCTGTTGAA
CCGCGACATTCGCATCCGTAACCCTCCGACAGCTGCCGTTGAGAGAATGC
TCGCGAACGGCAGGACGAGGGAGGCATTGGAGAAGGCCAAGGCCGACATG
GCCTCTGCGGAGGGCAAGGTGCGCGGTCGCCCTCTGGTTTGTCCTTTTCT
AATTCGGGACGACCACAGGAATCCCGTCTCTTGAAAGCAGACCTTGCAGG
CTAACGGGCTGCGCCCTGATTTTTCTTGCGGTGTGTGGAGTTGGTTGGTG
CTCTTATGAAAGTGCCGTGGATCCACAGTAGTCACTCATAGGAGGAGAGA
CGCCGTGTGGGCCTTTAACGGGATTCGCTAGAGCACGAGTCGTGCTACGA
ATTCTGTCCGACGCACCCGCCGATGTTGGCATGGATGAAAGGTTTGAGAG
ACGCGACGTGTTTGGCGAGACCCGTCGCGATCCCTATCGTGTCAGTGCGC
AAACTCTTGCATCCCCTCCCCGAACGCCTACCCCAAATATGTTTCCGCGC
AGCAATAATAACGTTTGTGGACCACTAGGCAAGATGGTGGGCGAAAGAGG
ACTGCAGTCATGGCAGCAGAGGGAGAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig12:1044390..1045666-

>mRNA_F-serratus_M_contig12.1563.1 ID=mRNA_F-serratus_M_contig12.1563.1|Name=mRNA_F-serratus_M_contig12.1563.1|organism=Fucus serratus male|type=CDS|length=570bp|location=Sequence derived from alignment at F-serratus_M_contig12:1044390..1045666- (Fucus serratus male)
ATGGGCGGCGTATCGGGCCTCATGTCGTTGACCAACTACCTCACGGTTGG
CCGCACGGACAGGCTTGTCGGTCTCGACGACTTCGACTACATATGGGCGG
CGTATCGGGCCTCATGTCGTTGACCAACTACCTCACGGTTGGCCGCACGG
ACAGGCTTGTCGGTCTCGACGACTTCGACTACATGCTGTTGAACCGCGAC
ATTCGCATCCGTAACCCTCCGACAGCTGCCGTTGAGAGAATGCTCGCGAA
CGGCAGGACGAGGGAGGCATTGGAGAAGGCCAAGGCCGACATGGCCTCTG
CGGAGGGCAAGGTGCGCGGTCGCCCTCTGGTTTGTCCTTTTCTAATTCGG
GACGACCACAGGAATCCCGTCTCTTGAGCTGTTGAACCGCGACATTCGCA
TCCGTAACCCTCCGACAGCTGCCGTTGAGAGAATGCTCGCGAACGGCAGG
ACGAGGGAGGCATTGGAGAAGGCCAAGGCCGACATGGCCTCTGCGGAGGG
CAAGGTGCGCGGTCGCCCTCTGGTTTGTCCTTTTCTAATTCGGGACGACC
ACAGGAATCCCGTCTCTTGA
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