mRNA_F-serratus_M_contig12.1546.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig12.1546.1
Unique NamemRNA_F-serratus_M_contig12.1546.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig12.1546.1 vs. uniprot
Match: D8LFD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFD8_ECTSI)

HSP 1 Score: 293 bits (750), Expect = 1.020e-88
Identity = 266/625 (42.56%), Postives = 316/625 (50.56%), Query Frame = 3 
Query:   45 MAGASSLQQDILALVNKHSDTCLPQDLLRRLAEEARLLAAREEIRSLHEEDRFGLFLELSSTEHDSVEEVDEEADHEGNLRQRGVAGLGESAVV----LPDNVKRMLGTMRVTRLDKVRCKLEKQGSSLDQLERGIAPVAALSGFTTIDAEVEFSES-----CEACATDCTPFPASPGVEQGGAEHTQQEDEEEAQQAR---------------------------------PVFLTFRFRREPLTKTSPEDCCANAKCIPSPDAGILRVGSVAEPGVLAGGVETIDLDAEEDGQEIVALL--------------------------------KGRA---PLKSPSGHSININNGAARW----GIEGRKRSGSRGGEFDV-RGGGEKGIKRPKAGRREQXXXXXXXXXXXXXXXXXXXDN-----AESGDGLDYDPKTLVSYTVCGGIGYDRPEVLLQAVVYARGDGPACVMPPLDDGEDPGDLIDVDVL---------GSVSGDQEDVFDCNVDGPALAAVGRALGLH-HDPSESDSNG-TAEEEGLDDSSEETG---------------------GPADGGMTLSDLVWWIMLFPFFEKEFDMVEVVASSVFG-DDGSDSDDG 1559
            MAGASSLQ DILALV KHSDTCLP+DLL R++E+ARLLAA+ +IRSLHEED FGLF               +  D EG   + G  G G   V     LPDNV RML  M++ RLDK   K EK   S + + R  + VAAL+GFTTIDAEVEFS +       A A+  T  PA         + T  E    A                                     PVFLTFRFRREPL ++ P +          P  G        E G   GG +  D D +E G+ I   L                                KG A   P K  +G  ++ + G        G EGRKR+GSRG E +  RGG +KG KRP       XXXXXXXXXXXXXX     +       E  +GLDY+P+TLVSY++ GGIGYD P  LLQA+VYARGDGPACVMPP                         GS   DQEDVFDC+V+GPALAA+GRALGLH  DP  SDS+  +A ++G D   +++G                     G   G MT SDLVWW++LFPFFEKEFD+VEVVASSVFG DD  DSDDG
Sbjct:    1 MAGASSLQDDILALVKKHSDTCLPEDLLARVSEDARLLAAKMKIRSLHEEDPFGLF--------------SDGRDEEG--AENGGGGEGARKVPSTDELPDNVLRMLEGMKINRLDKSSIKGEKVPDSSNLVPR--SQVAALNGFTTIDAEVEFSRTGTDSTATAAASAGTDGPALTSAAATRGKPTLSEGTVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAESPVFLTFRFRREPL-RSGPAE----------PSRG--------EGGRAVGGGDARDHDHQEAGEVIDLALDDXXXXXXXXXXXXXXXXXPKGDNEGGSLFEKKGSATAVPAKIAAGKDVSCDGGXXXXXDSHGKEGRKRAGSRGRESEEGRGGNDKGRKRPXXXXXXXXXXXXXXXXXXXXXGKQGVNGDAKQCEEDDEGLDYEPRTLVSYSISGGIGYDAPATLLQALVYARGDGPACVMPPXXXXXXXXXXXXXXXXXXXXXXXXXGSACNDQEDVFDCDVNGPALAALGRALGLHTEDPPTSDSDSDSASDDGGDVRMKDSGARPSASAKGPEKEPDTADGEPGKGIGSMTQSDLVWWLLLFPFFEKEFDVVEVVASSVFGEDDLDDSDDG 588
[Close]
BLAST of mRNA_F-serratus_M_contig12.1546.1 vs. uniprot
Match: A0A6H5K398_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K398_9PHAE)

HSP 1 Score: 249 bits (635), Expect = 6.330e-72
Identity = 246/622 (39.55%), Postives = 290/622 (46.62%), Query Frame = 3 
Query:   45 MAGASSLQQDILALVNKHSDTCLPQDLLRRLAEEARLLAAREEIRSLHEEDRFGLFLELSSTEHDSVEEVDEEADHEGNLRQRGVAGLGESAVV----LPDNVKRMLGTMRVTRLDKVRCKLEKQGSSLDQLERGIAPVAALSGFTTIDAEVEFSESCEACATDCTPFPAS------PGVEQGGAEHTQQEDEEEAQQAR-------------------------------------PVFLTFRFRREPLTKTSPEDCCANAKCIPSPDAGILRVGSVAEPGVLAGGVETIDLDAEEDGQEIVALL-------------------KGRA---PLKSPSGHSININNGAA--RWGIEGRKRSGSRGGEFDVRGGGEKGIKRPKAGRREQXXXXXXXXXXXXXXXXXXXDNA-------------------ESGDGLDYDPKTLVSYTVCGGIGYDRPEVLLQAVVYARGDGPACVMPPLDDGEDPGDLIDVDVL--------GSVSGDQEDVFDCNVDGPALAAVGRALGLH-HDPSESDSNG-TAEEEGLDDSSEETG---------------------GPADGGMTLSDLVWWIMLFPFFEKEFDMVEVVASSVFGDDGSD 1547
            MAGASSLQ DILALV KHSDTC P+DLL R++E+ARLLAA+ +IRSLHEED FGLF      + D  E               G  G G   V     LPDNV RML  M++ RLDKV                     AAL+GFTTIDAEVEFS +     TD T   A+      P V    A   +    E    A                                      PVFLTFRFRREPL +   E      K +         +G            E IDL  ++                            KG A   P K  +   I+ ++G      G EGRKR+GSRG                       XXXXXXXXXXXXXXXXXXX                      E  +GLDY+P+TLVSY++ GGIGYD P  LLQA+VYARGDGPACVMPP                        GSV  DQEDVFDC+V+GPALAA+GRALGLH  DP  SDS+  ++ ++G D   +++G                     G   G MT SDLVWW++LFPFFEKEFD+VEVVASSVFG+D SD
Sbjct:    1 MAGASSLQDDILALVKKHSDTCFPEDLLARVSEDARLLAAKMKIRSLHEEDPFGLF--SYGRDEDGAE--------------NGGGGDGARKVPSTDDLPDNVLRMLEGMKINRLDKV---------------------AALNGFTTIDAEVEFSRT----GTDSTATAAASAGTNGPTVTSSAATRGKPTLSERTVAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGSPVFLTFRFRREPLGRGPAESWDGRGKRV--------ALGGDVHDNDHQKAREVIDLALDDXXXXXXXXXXXXXXTPKGDNEGGSLFEKKGSATAVPNKIAASRDISCDDGGGGDSHGKEGRKRAGSRGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKQGVDGDAKQCEEDDEGLDYEPRTLVSYSISGGIGYDAPATLLQALVYARGDGPACVMPPXXXXXXXXXXXXXXXXXXXXXXXGGSVCNDQEDVFDCDVNGPALAALGRALGLHTEDPPTSDSHSDSSSDDGGDVRMKDSGARPSASAKGPEKESDTADGEPGKGIGSMTQSDLVWWLLLFPFFEKEFDLVEVVASSVFGEDDSD 573
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig12.1546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFD8_ECTSI1.020e-8842.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K398_9PHAE6.330e-7239.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig12contigF-serratus_M_contig12:707769..717443 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score307.4
Seed ortholog evalue1.3e-80
Seed eggNOG ortholog2880.D8LFD8
Hectar predicted targeting categoryother localisation
EggNOG OGs2EXJ4@1,2SZ7F@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_005910.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1559
Cds size1515
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig12.1546.1prot_F-serratus_M_contig12.1546.1Fucus serratus malepolypeptideF-serratus_M_contig12 707769..717399 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929105.2959297-CDS-F-serratus_M_contig12:707768..7080711622929105.2959297-CDS-F-serratus_M_contig12:707768..708071Fucus serratus maleCDSF-serratus_M_contig12 707769..708071 -
1690962707.1406667-CDS-F-serratus_M_contig12:707768..7080711690962707.1406667-CDS-F-serratus_M_contig12:707768..708071Fucus serratus maleCDSF-serratus_M_contig12 707769..708071 -
1622929105.3149748-CDS-F-serratus_M_contig12:708680..7088721622929105.3149748-CDS-F-serratus_M_contig12:708680..708872Fucus serratus maleCDSF-serratus_M_contig12 708681..708872 -
1690962707.1515472-CDS-F-serratus_M_contig12:708680..7088721690962707.1515472-CDS-F-serratus_M_contig12:708680..708872Fucus serratus maleCDSF-serratus_M_contig12 708681..708872 -
1622929105.333576-CDS-F-serratus_M_contig12:709332..7099501622929105.333576-CDS-F-serratus_M_contig12:709332..709950Fucus serratus maleCDSF-serratus_M_contig12 709333..709950 -
1690962707.1621146-CDS-F-serratus_M_contig12:709332..7099501690962707.1621146-CDS-F-serratus_M_contig12:709332..709950Fucus serratus maleCDSF-serratus_M_contig12 709333..709950 -
1622929105.3457072-CDS-F-serratus_M_contig12:716533..7168011622929105.3457072-CDS-F-serratus_M_contig12:716533..716801Fucus serratus maleCDSF-serratus_M_contig12 716534..716801 -
1690962707.1747696-CDS-F-serratus_M_contig12:716533..7168011690962707.1747696-CDS-F-serratus_M_contig12:716533..716801Fucus serratus maleCDSF-serratus_M_contig12 716534..716801 -
1622929105.3641932-CDS-F-serratus_M_contig12:717265..7173991622929105.3641932-CDS-F-serratus_M_contig12:717265..717399Fucus serratus maleCDSF-serratus_M_contig12 717266..717399 -
1690962707.182692-CDS-F-serratus_M_contig12:717265..7173991690962707.182692-CDS-F-serratus_M_contig12:717265..717399Fucus serratus maleCDSF-serratus_M_contig12 717266..717399 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929105.380459-UTR-F-serratus_M_contig12:717399..7174431622929105.380459-UTR-F-serratus_M_contig12:717399..717443Fucus serratus maleUTRF-serratus_M_contig12 717400..717443 -
1690962707.1901565-UTR-F-serratus_M_contig12:717399..7174431690962707.1901565-UTR-F-serratus_M_contig12:717399..717443Fucus serratus maleUTRF-serratus_M_contig12 717400..717443 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig12.1546.1

>prot_F-serratus_M_contig12.1546.1 ID=prot_F-serratus_M_contig12.1546.1|Name=mRNA_F-serratus_M_contig12.1546.1|organism=Fucus serratus male|type=polypeptide|length=505bp
MAGASSLQQDILALVNKHSDTCLPQDLLRRLAEEARLLAAREEIRSLHEE
DRFGLFLELSSTEHDSVEEVDEEADHEGNLRQRGVAGLGESAVVLPDNVK
RMLGTMRVTRLDKVRCKLEKQGSSLDQLERGIAPVAALSGFTTIDAEVEF
SESCEACATDCTPFPASPGVEQGGAEHTQQEDEEEAQQARPVFLTFRFRR
EPLTKTSPEDCCANAKCIPSPDAGILRVGSVAEPGVLAGGVETIDLDAEE
DGQEIVALLKGRAPLKSPSGHSININNGAARWGIEGRKRSGSRGGEFDVR
GGGEKGIKRPKAGRREQEEEADRDEGEEEGEGEGVGDNAESGDGLDYDPK
TLVSYTVCGGIGYDRPEVLLQAVVYARGDGPACVMPPLDDGEDPGDLIDV
DVLGSVSGDQEDVFDCNVDGPALAAVGRALGLHHDPSESDSNGTAEEEGL
DDSSEETGGPADGGMTLSDLVWWIMLFPFFEKEFDMVEVVASSVFGDDGS
DSDDG
back to top

mRNA from alignment at F-serratus_M_contig12:707769..717443-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig12.1546.1 ID=mRNA_F-serratus_M_contig12.1546.1|Name=mRNA_F-serratus_M_contig12.1546.1|organism=Fucus serratus male|type=mRNA|length=9675bp|location=Sequence derived from alignment at F-serratus_M_contig12:707769..717443- (Fucus serratus male)
AGCAGTAGTAGTTGTTCTTAATCCCAAACCGCCTATTAGCAGGCATGGCT
GGCGCTTCGTCCCTCCAACAAGATATACTTGCTCTAGTTAATAAGCATAG
CGACACATGCCTTCCCCAAGATCTGCTCAGGAGGCTGGCCGAGGAAGCTC
GATTGCTAGCTGCTAGGGAAGAGATCAGGTGATAGAGGCGCGCGCGCTCT
CGGGAGAGCCGTTCTTTCGATTTGCTGTCGGGGAATTGGACGTGTGGGCT
TATGCCCGCCTCTCCCTAGCCGACGCCGATATAATCGCGCGGATTATACG
TCCAACCAGTACGCAGCCGAGCTGTTCAGAGTTGCCCTCACTTGGTCGCT
GTTCGCTGTCCGGCTCACTTCTACGCATGATGTACACCCTACTCCTTGTA
GTCTAATACAACAGCGGCGATTGGTTTTTCAAAACGCTCTGTGACGGAAA
AGTATTATAATAAAAGGGATGCATTCCCCTTGCCTGTCGCAGGTATAGAG
CTTCTGCAATCCTGTCCATGGAACCTAACCATGAGATGCTTCCCTCGAAA
TCGTTCCGTCTGGAGGATTTCCTCCCCAGAGGATCCGGCCTTGGCAGACA
AAATTTAACATCAAATCGTTTGCGTGTTTCATCTCAGCATAGGTCGCTCC
ATGAAGAGGACAGGTTCGGTTTGTTCTTGGAGCTCAGCAGCACGGAACAT
GACTCTGTCGAAGAAGTGGACGAGGAGGCGGACCACGAGGGGAATCTTAG
ACAGCGCGGGGTGGCAGGACTGGGTGAAAGTGCCGTAGTGCTGCCGGATA
ACGTAAAGCGCATGCTCGGAACGATGAGAGTCACACGTCTCGACAAGGTA
CGCTGCAAGCTGGAGAAACAGGGGTCAAGCCTCGACCAATTAGAAAGAGG
CATTGCCCCTGTACCAATTATTACTGGCTTAACAATTGAAACTCATAAAT
TTGAAATAAATACCCCGTATTTTGTCGTTTGATCAGTTCGTACAGGAAGC
GTGCTTATTTAGTCTACCCTGGCAGAAAATCGAGATCATTGACAAATACA
GCTGCAGTAATGGAGAGCAGTAAATTCCGGTCACCCCGGTAGCTCAGGGG
TAGCCTCGTAACCTTCTGACACGTTGGGACTTTTCTCACTAAAAAACTAA
AAAAACTAGAATATAAATGCCCAACGAGTGGAGAACGATTAAAATCGTAA
GTACACAAAATTCAACTTCACGGTCGACGAGAGAAACGAAAGGCTGAATC
CTTCTCGCGAGAAAAATGAAGACACGCACCGCAGGAAGGTTGATGAGAAA
TCCTGTGTGACCTTCCTCCTGTGTGACCCCGGCTGGTACGTCCTAACGAA
CTTGATGTTCAGAATGAATGTGAAGAAAAAACATTTGGCCAAGAATGGTG
AACCCAATTTTATACCGCCTAATGTGGGATCAAAAAAAGAAAAAAAGCGG
TTTAGAGTTAATCTGGCCTAGAATCAATTTTTGGCAGCGACTGCATCACT
CACGTCCAAGCCGAAATGAGTAGATAAATCTCGATGTGTATTCTACCATT
TTCTTTCCTAATTCTTCCCCAGCGACTCATCACCTCGCGCTATTACACGC
CAAAGCCAAAGCCAAAGCCAAAGGGGCTCCGGTCACGTGATAGGTTAGGT
TCACACGTTCTGTCTCAAAATCGTGTCTTCAGCAGCACGATATAGATTAG
CCCACTCCAAACTCTTCTTACGTATCGAAAAAACTACCAATGCCTGCCAT
TCTGTGTCGCCTTTTAATAATTGCTGTCGGCCGCAACTCGAAATAAGCCC
CTCACACACACGTTTGCAATCATCGTTCATCGTCTTTGATGGGGTCTTTC
TTTCCGCAAATCCCGTGGAGGTACTGTACCCATAACATTTTACGGCATTT
GTGGATTGCGTAGAGGGGTGGCCCTGGTGTCTGCCCCGGTAGCTTACCGC
GCACGCCCGGTACACACGGCATGACTTGGAGTCTCTACCCCCACCGTCTA
GCGTCCATTGAACAAACCCAACCCTTTTCGCGAGAATGTTGTACCGTATT
ACATATTCGCCGTTACTTTCAACATGCCTACTTCATAACCAATAGTGGGT
GTGGGAAAGAAAGGCGTATATTAATTGGTCCATAGTGACCTGCGAAGGCA
GCACTCGTTCGAAACTACCTTGAGGTATGCTGGCCCTGTGCCGGCGGATT
CTCGGCAGTGAACGCCATCGGTACGCAATTGCGTGACCCGATAACTTGGG
ACTTACCCGATGGCGTATGGCGGTTTAATATTAATATATGGACGCCGCCG
CGGAACTCGGGAGGAATCCCGTAAGTAAGCACCAGATTCAGCCTGAGTAT
GGAGATGAGCAGGCTGACGCGGGACGGGACTGCCGAAACCGTCTCGCGAG
ACCAAATTCCCAGGCTCGAACGCGGACAGGGGAATATTATTTTCTCTGTT
CAGCTGACCACAAGCAGGATTGGCAACCTTAACAGGTTGATCGATACTCT
TGCTATATGTGTGACCATACATTACATCAATAGTGCGAACCTCGTGTGAA
TTGTAAACGTACCGGTACTTTTTAAAAGAAAATTCAGAACGCGCCTGTAC
CTTCTGAGTCTTGCCATCTCTGATCTGAAGTGGCCTAAAAGCCGTTTTTT
TGTGTGTGTAGTTCGAGAAAAGGCGATATAAAATTAATCTGGCCTATAAT
ATCCGGTACAAAATCGGGTCCACTGTACTCCTTGATCTGAGGCCAACTCT
TATGCGAGATCGAAAACGAAAAATCCCAGATCGAAAATCGGCCGTTTTCG
ATCTGGCAAAATCGTTTTCGTTCCGGGAACAAAAACTATCTTATGTGAGA
TCGAAAAATCGGCTGGGTTTTACTTGCGGGGTTAGCTACATACCTTTGTT
CGCAAGTTCAAATGCCGACCGCTGACCACGTACCTGGTACATTTTTTGTA
CAAACGTACCAGTATACTGGTACTATGGTATAACTTATGTGTATGAAGAA
AACGAACATTCATTTGTAGCTCCTGCCCATATGTGGGCATGCTGCTACTA
TCAATACTCCATGGATCGACAGCAGTACAAGGGCTGGGTCACGCGGTGAC
AGCAGTACAAGGGCTGGTTGACTAAGCTATAAAATCGCCCTATCAAACGC
TCGCGGTTGCTGGTCGAGCGTACGCGGACGATATAAATATAAATAAACTG
CAGCACGAGCAGCAGGCAGCAAGTTTGTACAGCAGCCCTCGGTTGTGGCC
ATCGCCACAGAACAATCATTCATATCTACAGCAATACTATCCACACCAGA
GTCAAAATTAAAAAAGTACTGGGTGAAGTTGCTTTTAGTCAGGCCGTGGG
ACCACGGTCCTCGTTATCTGTCCGCTCGTCATCTTCCAAGTCTAACAGCT
CAAGCACTGCAACACAAGTAGCCACGGCCCGGACTCGCTGGCGAGTTTCT
GTGAAGGCTGCCACGGCAGCCAGTGAGGCCTTGTAGCGACGACGAGCAGA
GCGCCTCATGACCTCAATAGAAATGTCTTGAACAACTGCATCTAATTTAC
TATTGGTTTTTGTGAGGGGGTCTTGGACACGCTTTGGTATCTAGTGGAGC
AGTATTTTTCGATCACCATTTCCGTGATCGAAAATCAGCCCCATTTTCGT
GCGATGGAGTGAACGAAAACGCTAGATCGAAAAATACTGCTCGGAAATCG
CCAAAATCCGGGCGCATAAGATAGCTTTATTCTTCTGATCGAAAAATTCC
AGATCGAAAAACGCCGTTTTTCGTTTTCGATCTGCGTTTTCGATCTCGCA
TAAGATCGGGCCTGACTATTAATATTAATACTGTGTATCAGCTCTATTAA
TAATCCAAAATGGTAGGTAGTCAAATGTTCAACCATTTGTAATTTGCCAC
GTAGGACGTTGAACAAATCTGAAGGCATCTAGACCTTCTGAGTGTCCCCG
AGTCAGGGGAAAATATATCGAAACGTTTAGGTGGGATCGTCGGCTGCAAA
TACAAAACCTCTTCATGGTTCTGTATAAGCTCTAATATACAGTATATTAA
AGAAAAATGTAGACCTTCTGATCCGCCCCCGGTAGGGGGAAAAAAAATCA
AAACGTTTAGGTGGTATCAAAGGCTGCAAATACAAAACCACTTCATGGCA
TTTAAACGGGGACCTTGGGTCAACAGTATAATGTCGGGGAGAAACCCACC
GTTATACTTTACACTTACATTAATCGCCATGCAGGGACACCATAAAGACA
GCAGAGACAAACCAGTACATCATCAAACAGTAAAGACGAATCCAATACAA
CATTGAAACGGGAACAGAGGAGGACCATGGTGATGATGTGAAATCTTCAT
GTTATCCAAGTACGCGACACCGTTCACCTGGAATTAGTCGAAGAGCAGTG
GGAGATCACACAAGGAAGTAAGAGGCAAGCGGAAAGAACTGGGTTCCTCG
CTCAATACTTGTCAGGGCTACGACACACAGATGCTCCTGATACATGGACT
TAGCGATGGCCCCGCGGTGACCAGAAATAACACAAGAGGAAGAAGCATCT
GTTTGTCGAAGTGACTTAAGTACGCCTTGATTTGATTGTTGTCCCCCTTT
CCTCCTTCTGTGTTTTTCTTTCGCTTTGTGTCACATTCGTTGTCGTTGTC
CTTGCCTTCCTGATCCGCTGCTTATACTTGAAGGGCTGCTTTTTCTCGCG
TAGCCTGCTGACCAAGATATTTTTCTTGTCGTACGCGTATTAGACCTAGA
TTATAATTAGACCTATGTGATTGCCTTTTGTTTGTGATGTTTTTGTTTTT
ATCCAAGAAAAAAATGGGTCTCTTCTGTATCCTTTCCTGGCGACGATGTC
CTTTCTTGTCTGTTTACTTTTTTGTCTGTTCCGTCTATTCATATCTTGTG
ACCACGGCTGGATTCGTAGCGGGTCAGTTAATGTGAGATAAACAGCAACA
ACCAACTACTAGTGCTGCTGTACGAAGTTTTTACAAGGCTGAACCGAACC
CAAATCTGGTCGTCCAACTACTACCGTACCTGTTATCCCCTCAAGTGATT
TGTTTTTGAGTTTTGTCCTGACAAGTCACTTGTACTGACTGAAACCACAG
ACAGTATTAAGTATTAATAGTGTAAGAGCAGTACAAATCTTCGGCTGAAA
AGTCGTGCATACCTGTACTATAAATAATATTAGCGTCATTTACTATGTAA
TGGCATCATTTAGCAGAAAAAAGAAGAAAAACAAATCACGTGAGATGACC
GCCGTTTTGAACCGAAGGTCCAGCAGCGATATCATAGCATATCATAGTAT
AGCGGTGGGTGGTGCGGTGGCGGCCTTTACTACTGTACTACTGTACTGTT
TAAGGAAAAATCAGAACGCGCCTATCTCTACCTTCTGTTAATAGTCAATA
GTCAATAGTCAATAGCATCCCCCAGTCAGGAGGGAAAAAATGTCAGAACG
GTTAGGTGGGATCATAGGCTTCAAATACAAAACTTCTTCAAGACATTTCA
ACGGGATCCCCTATGGTATTAATATTTAGTAACATTGGGTCAACAGTATA
TTGTCGGGGAGTACTGTAAAAGTTTGGTGTGCGTGCGTAGACTAATATTA
TCAAGAGTTTTACAAAATAATGGATGTCGGGTACCTGGCTGAGATGAGCG
TTCAAAATAAATAATATATAGTTGTACTAGGTAACGTACCTATCATAGAG
AACAGCACTCATATTAATAATAGACCTACTGAGTACGATGTAAATGGCGG
GGGGTTTCGTTGGGAAAGGCGGAAATAGGGAGGGGGGCTGAGGGGTGAAG
GTGACGCCTCCCCTTTATACCCCTTGTAGGGCTTTCCCCGCCTGATGCTG
CAGTAAATTGCAGTAAGCTAGCCGTCCCGGGACGCAAATTCGACTTGACT
CGAGCTCTTGCCCGGAACGGCGGGTGCCAGCGAAATGTATCGAGCCATAC
CTGGAACGGAGGGATGTCGCTGAGTTGTCTCGGCTGCAGCCAGGACTCAT
GAAAAGCTCTTCTTGAACAGCGCCTGGACCCTTATTACAGATCCCTGTCT
TACATTGAGCTGCGAGTAGCCGAAACATCCTCACAGTAACCACGAGGTAC
AGTACATGTACAGCAACAGAGAATTACGGGATACAGCAGTGATTTTTGGT
TACAGAGTCTGGACTCCTCGCCTGTCATATCTACACTATATCATTATTAG
TATATTAGTTGTACAGTAGTGTATTATACGAGATGTCCTGCCTGCAGGTA
CGCAGGACCCCCAACATTTTCTTCATAATATTGCTCACAGGATGTATCGC
CCAGGAGTCTTGTCACCGGAACGCCTTGGTTAGATAAACTGAAACCTTCC
TCGTCGTACTATTAATAGGTCGCCGAGATATGAAATAATATGAAATACCA
GTACTGTATATCGTTTCAGTGGCCTAAAGACAACCTTAATACGGCAGCAG
AACGGATTCAAGCTGTGTGGGAACAAGACGCTTACTGTACAGTACGTATG
TGATGTATGTTGTCTACCAAAATATGGAGCTGGCGATGATATAATTATAT
GGGAAAATGAGGCACTCAATATTCCTATTATATTAGTACAGTACAGTATA
GTACAGTAGTATAGTATCCCCACCCAAGCAAAGTTTTAAGGCGGGTGAAA
TAATGATAATGCAATAAAATGTAGTTCAACGGGGATGGAAATTGAAAACA
TCCGTCCCCCCGCCCCATCCCCCCTGATATTCATGACAATATGACTAAAT
CTGGTGTGTAACCAAAATGAAGCAAGCTATTAATGGTATTATTACTTTGC
GCAAGTGAATGCCTCCCAAGTTTTATACTGGTACGTTATAGACTATTTGC
CAATTAATAGTTTAGAGCACTATTGATAAGAGAGGAACCCTGAACCTTCC
TTTACAAGCCGCGACTCTCTGAGGCGTGGATCGACAGAAATGCTGCTCCA
AAATTCATCGGCAGAAATTTTTTCCCAAGCCTAGATCACATCGAGATTCT
AGGGAAATCGATTAAAGACAAGATCGAAAAAAACTATTCTGCGGGATAGT
AGTTGAGTTCTCTTGGAAAATATCAACCTGGAGCGTGATCGAAAACTGAG
GAAAATATCCAGCCGAATGTCAGATGATGACCACCCGCCACATAATTACT
TATCAATGACCTCACTATTTTAGCATATTTTAGCCAGGTACAAACAGTAG
GCACAACCCCTTCGGTATGGGCCCATCATGTCTGCGATGTCTGTGGCTTG
GATGGTTGCCATGTTCGATCCTTTCATTGCGGACCCAAGAAAACGCGGCG
AAAACATTGCGTAAGACACGTTGCCACCAGTATTAATAGTAAAAAACGTA
CCTAACTGAGAGGTCCATTCATACTGATAGTGGAGCTGCTGTTAACATTC
GATTCAGCTATTTAATAAGCGTAAAAGGGCATTGACCAGGACTGCGTCTG
TCTGTTCAATACCGCGCGTTGTTCTTGGCCAAATGTTTTTTAGGTCGCCG
CGCTGAGCGGCTTTACGACGATCGACGCCGAAGTGGAGTTCTCGGAATCG
TGCGAGGCTTGCGCGACAGATTGTACCCCCTTTCCGGCATCGCCCGGCGT
AGAGCAAGGCGGCGCAGAACACACTCAACAAGAAGACGAAGAAGAGGCAC
AGCAGGCTCGGCCCGTGTTCCTAACGTTCCGCTTTCGAAGAGAGCCCTTG
ACCAAGACCTCGCCTGAAGACTGCTGCGCCAATGCGAAATGTATTCCTTC
ACCTGATGCCGGCATCCTTCGCGTCGGGAGCGTCGCCGAACCAGGCGTGC
TAGCGGGCGGCGTTGAAACGATCGACCTCGACGCCGAAGAGGACGGGCAA
GAGATCGTCGCGTTGCTGAAGGGCCGGGCACCCCTCAAGAGCCCCAGCGG
GCACAGTATAAATATCAATAATGGGGCGGCAAGGTGGGGGATCGAGGGTC
GGAAGCGATCTGGGTCGAGAGGCGGGGAGTTCGACGTCAGAGGCGGTGGT
GAGAAGGGGATTAAGAGGCCTAAGGCGGGGAGGAGGGAGCAGGAGGAAGA
AGCGGATCGCGACGAGGGCGAGGAGGAAGGGGAAGGGGAGGGCGTCGGGG
ATAACGCTGAGGTCGGAGACGACCCGGACGGATCGTTTGACGTCATCGAC
GGCGATGAAGATGCCGAGGTATTAATAGCGTAAAAGTCAACAGCGTTTTT
TCTTCTTCTATTTGACGCTGGTGGTTTTCATATGGCGTGGTCGGCGTAAA
ATCGCGGCCGTAGGAGCTTTAAGATGTGGCAGGGAAGGGGAGGGTTACGA
TGTACGGTAGGGCGTCATGCTCGATCTCGATTGCAAAGCAGGGGAAGATT
ACATGTAGGGTACGCTGGCTCTTTTTTGGGGAGGAGGGGGGGTAAACTCC
CGTTGACTCCATTCCATTGCCGCGTGCACCATGTTGTGCAGCACTTAGCC
AGCACCGGTAATGATTTTGCCAGCTTTGCGGATGATGCTGCACGACTGCC
ACGACACACACCGCCGCCTCAGCGCAAAACCTCCCTCGCTCTCCTCTCGG
GGCGTGTACCCGCACATGCAGTCTGGCGACGGCCTGGATTATGACCCCAA
GACCTTGGTGTCGTACACCGTCTGCGGCGGGATCGGCTACGATCGCCCGG
AAGTGCTGCTGCAAGCGGTCGTGTACGCCAGAGGGGACGGACCGGCGTGC
GTCATGCCTCCGCTGGACGACGGAGAGGATCCGGGTGATTTGATCGACGT
TGATGTGTTGGGTGTTTCAACTAGGCCTCACACCCCTTTCATCGGCTACA
GCAGTACTCGCAAGTTGTGTGCGGTAGCGCCTTTTCGCGGTCGGTATTAT
TAGCGACGCGGGAAGTAGCCCCGGTCTTGGCTCGTGATGCCCGAGCACTG
ACCGGACGTTATGCTTGCGTCGGGATTCGGATGCCCGCCGCGACTTTTCG
CCTTCGCGGTATCGTGCCACCGACGAGGCGCTGGCATTGGATAGTATGGA
GGTCTTTGGATGGCACTCGAAGGGTTTTCTCACTGACCCAGATCGCCCTG
CATCACGAACAGGCTGGCGTATTTTAGAGATCCGATCATTGTGACTCGCG
CGTTGTTTGCGCGCGGCATGCAAAATTGAATCGCGTGTATAACCCACATG
CCTTTCCTACTGTTGGAACTCTTGTGGTGATATCGCGAGGAATGTTATTC
GCGTCAGAGATGCGGTGCTCGACGTCCAGAACATTGTGAGGTATTCGATT
CTACGCGCCCCCGCCGTGTTCTCTCCCTCCTCACCTTACCTTACCTTACC
TTTCCTTACCCGCGATGCATGCCCTCTCCCTGCCGGTATTTCGTTATTAT
TTTTAATGATTACCTTGTAGAGAGTGTTTCCGGCGACCAGGAGGACGTGT
TCGACTGCAACGTCGATGGCCCGGCGTTGGCGGCCGTGGGGCGAGCGCTG
GGGCTGCACCATGACCCATCAGAGTCGGACTCCAATGGCACCGCGGAGGA
GGAGGGTTTGGACGATTCAAGTGAAGAGACCGGCGGCCCAGCCGACGGGG
GAATGACGCTGTCTGACTTGGTGTGGTGGATCATGTTGTTCCCGTTTTTT
GAGAAGGAGTTCGATATGGTGGAGGTCGTTGCGTCGAGCGTGTTCGGAGA
CGACGGTTCCGATTCGGACGACGGC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig12:707769..717443-

>mRNA_F-serratus_M_contig12.1546.1 ID=mRNA_F-serratus_M_contig12.1546.1|Name=mRNA_F-serratus_M_contig12.1546.1|organism=Fucus serratus male|type=CDS|length=3030bp|location=Sequence derived from alignment at F-serratus_M_contig12:707769..717443- (Fucus serratus male)
ATGGCTGGCGCTTCGTCCCTCCAACAAGATATACTTGCTCTAGTTAATAA
GCATAGCGACACATGCCTTCCCCAAGATCTGCTCAGGAGGCTGGCCGAGG
AAGCTCGATTGCTAGCTGCTAGGGAAGAGATCAGATGGCTGGCGCTTCGT
CCCTCCAACAAGATATACTTGCTCTAGTTAATAAGCATAGCGACACATGC
CTTCCCCAAGATCTGCTCAGGAGGCTGGCCGAGGAAGCTCGATTGCTAGC
TGCTAGGGAAGAGATCAGGTCGCTCCATGAAGAGGACAGGTTCGGTTTGT
TCTTGGAGCTCAGCAGCACGGAACATGACTCTGTCGAAGAAGTGGACGAG
GAGGCGGACCACGAGGGGAATCTTAGACAGCGCGGGGTGGCAGGACTGGG
TGAAAGTGCCGTAGTGCTGCCGGATAACGTAAAGCGCATGCTCGGAACGA
TGAGAGTCACACGTCTCGACAAGGTACGCTGCAAGCTGGAGAAACAGGGG
TCAAGCCTCGACCAATTAGAAAGAGGCATTGCCCCTGTCGCTCCATGAAG
AGGACAGGTTCGGTTTGTTCTTGGAGCTCAGCAGCACGGAACATGACTCT
GTCGAAGAAGTGGACGAGGAGGCGGACCACGAGGGGAATCTTAGACAGCG
CGGGGTGGCAGGACTGGGTGAAAGTGCCGTAGTGCTGCCGGATAACGTAA
AGCGCATGCTCGGAACGATGAGAGTCACACGTCTCGACAAGGTACGCTGC
AAGCTGGAGAAACAGGGGTCAAGCCTCGACCAATTAGAAAGAGGCATTGC
CCCTGTCGCCGCGCTGAGCGGCTTTACGACGATCGACGCCGAAGTGGAGT
TCTCGGAATCGTGCGAGGCTTGCGCGACAGATTGTACCCCCTTTCCGGCA
TCGCCCGGCGTAGAGCAAGGCGGCGCAGAACACACTCAACAAGAAGACGA
AGAAGAGGCACAGCAGGCTCGGCCCGTGTTCCTAACGTTCCGCTTTCGAA
GAGAGCCCTTGACCAAGACCTCGCCTGAAGACTGCTGCGCCAATGCGAAA
TGTATTCCTTCACCTGATGCCGGCATCCTTCGCGTCGGGAGCGTCGCCGA
ACCAGGCGTGCTAGCGGGCGGCGTTGAAACGATCGACCTCGACGCCGAAG
AGGACGGGCAAGAGATCGTCGCGTTGCTGAAGGGCCGGGCACCCCTCAAG
AGCCCCAGCGGGCACAGTATAAATATCAATAATGGGGCGGCAAGGTGGGG
GATCGAGGGTCGGAAGCGATCTGGGTCGAGAGGCGGGGAGTTCGACGTCA
GAGGCGGTGGTGAGAAGGGGATTAAGAGGCCTAAGGCGGGGAGGAGGGAG
CAGGAGGAAGAAGCGGATCGCGACGAGGGCGAGGAGGAAGGGGAAGGGGA
GGGCGTCGGGGATAACGCTGAGGTCGCCGCGCTGAGCGGCTTTACGACGA
TCGACGCCGAAGTGGAGTTCTCGGAATCGTGCGAGGCTTGCGCGACAGAT
TGTACCCCCTTTCCGGCATCGCCCGGCGTAGAGCAAGGCGGCGCAGAACA
CACTCAACAAGAAGACGAAGAAGAGGCACAGCAGGCTCGGCCCGTGTTCC
TAACGTTCCGCTTTCGAAGAGAGCCCTTGACCAAGACCTCGCCTGAAGAC
TGCTGCGCCAATGCGAAATGTATTCCTTCACCTGATGCCGGCATCCTTCG
CGTCGGGAGCGTCGCCGAACCAGGCGTGCTAGCGGGCGGCGTTGAAACGA
TCGACCTCGACGCCGAAGAGGACGGGCAAGAGATCGTCGCGTTGCTGAAG
GGCCGGGCACCCCTCAAGAGCCCCAGCGGGCACAGTATAAATATCAATAA
TGGGGCGGCAAGGTGGGGGATCGAGGGTCGGAAGCGATCTGGGTCGAGAG
GCGGGGAGTTCGACGTCAGAGGCGGTGGTGAGAAGGGGATTAAGAGGCCT
AAGGCGGGGAGGAGGGAGCAGGAGGAAGAAGCGGATCGCGACGAGGGCGA
GGAGGAAGGGGAAGGGGAGGGCGTCGGGGATAACGCTGAGTCTGGCGACG
GCCTGGATTATGACCCCAAGACCTTGGTGTCGTACACCGTCTGCGGCGGG
ATCGGCTACGATCGCCCGGAAGTGCTGCTGCAAGCGGTCGTGTACGCCAG
AGGGGACGGACCGGCGTGCGTCATGCCTCCGCTGGACGACGGAGAGGATC
CGGGTGATTTGATCGACGTTGATGTGTTGGGTTCTGGCGACGGCCTGGAT
TATGACCCCAAGACCTTGGTGTCGTACACCGTCTGCGGCGGGATCGGCTA
CGATCGCCCGGAAGTGCTGCTGCAAGCGGTCGTGTACGCCAGAGGGGACG
GACCGGCGTGCGTCATGCCTCCGCTGGACGACGGAGAGGATCCGGGTGAT
TTGATCGACGTTGATGTGTTGGGTAGTGTTTCCGGCGACCAGGAGGACGT
GTTCGACTGCAACGTCGATGGCCCGGCGTTGGCGGCCGTGGGGCGAGCGC
TGGGGCTGCACCATGACCCATCAGAGTCGGACTCCAATGGCACCGCGGAG
GAGGAGGGTTTGGACGATTCAAGTGAAGAGACCGGCGGCCCAGCCGACGG
GGGAATGACGCTGTCTGACTTGGTGTGGTGGATCATGTTGTTCCCGTTTT
TTGAGAAGGAGTTCGATATGGTGGAGGTCGTTGCGTCGAGCGTGTTCGGA
GACGACGGTTCCGATTCGGACGACGGCAGTGTTTCCGGCGACCAGGAGGA
CGTGTTCGACTGCAACGTCGATGGCCCGGCGTTGGCGGCCGTGGGGCGAG
CGCTGGGGCTGCACCATGACCCATCAGAGTCGGACTCCAATGGCACCGCG
GAGGAGGAGGGTTTGGACGATTCAAGTGAAGAGACCGGCGGCCCAGCCGA
CGGGGGAATGACGCTGTCTGACTTGGTGTGGTGGATCATGTTGTTCCCGT
TTTTTGAGAAGGAGTTCGATATGGTGGAGGTCGTTGCGTCGAGCGTGTTC
GGAGACGACGGTTCCGATTCGGACGACGGC
back to top