mRNA_F-serratus_M_contig1199.1525.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1199.1525.1 vs. uniprot
Match: A0A6H5JGF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGF5_9PHAE) HSP 1 Score: 350 bits (899), Expect = 1.040e-104 Identity = 247/581 (42.51%), Postives = 312/581 (53.70%), Query Frame = 1
Query: 451 LTPQKGARGGLIAAGAACGVLSAVNFFSAAKHQLRLG-PRSTPLRKFLLTELVGSLGAGFIAGVKLASGYLVLRGLVELLPNQPLQPVLALFLGLP------NDHDSGARE------AGMLTVTYLVFLSTALNFALHLVSAVIMNLIILAPQDFVRLWGAKSSSASTARQ-------SSWPLPQSPSAMLLDMLCIGHEAALWAAEKDFLKERESGG----------SSYTPGSMGDWKEELELQRRSLALTSMGTSAGTGQRSG-----------WAVVTATWLPVWAQVAKAQALQSIALQAPRDVGIRAALYEVNITQVLRALCLELDSTNLLVQSFRLRENPSAVASSLGCEGRGDLGWLAQKMMSSSSAGSSSMGGPYRRALQYVQVRFTLPFRDTL-----FSVLLALWSSG------GREQEREARPGEGPEKPTLSSARAQSTVWAAQGVSALMVHAPGESRHVVLDAMLPVVLGSLAGLLLAVRSCSA------------QEAASDDRPEGSYARALAGHRT----------LALELEKALSEVAQKYRGCLGEYRFPPAYAEVINSLCSA 1971
L GA GGL+A GAAC SAV F +H LRLG P + +L E GS G + G + +GYLV+R + ELL + L++ LGL D G + G L V YL+ +STA NFALH +MN II+A QDF+RLW A +AS + ++ +P SP+AMLLD L IGHE L AE+DFL+ R GG SSYT G M DW EE ELQRR++AL M +R G ++ +PVWAQVAKAQALQS+AL+AP D +R ALYEVNI QVLR LCLE+D +LL+Q+ + E+ + A +LGCEGRGD+ WL + M +SS G RR L ++ TLPF TL +VL L +S GR E E GE LS AR QST+WA QG+SAL+V+APGESR LD MLPVVLGSL+GLLLAV+ S +EA S + + L LE+AL+ V+ KYR CL + RFPP YAE IN C++
Sbjct: 232 LAETSGALGGLVAGGAACSAWSAVCFLRERRHHLRLGLPSGAAMPAYLRGEACGSAKEGLLCGAVIGAGYLVVRTVSELLTGSMVGRALSVLLGLSAAASTSEGADGGGGQPTVGEGVGRLLVAYLIVVSTAANFALHGFLTKLMNFIIVASQDFLRLWQATVDAASDEQDRAGGRPAAAANVPASPAAMLLDSLSIGHETVLRTAERDFLQARGLGGGNGGAGGHEASSYTRGPMSDWTEETELQRRAVALACMEPPRTERRRGGGVGVRGIVRMPFSYTRGVVVPVWAQVAKAQALQSLALRAPCDKNLRVALYEVNIAQVLRTLCLEVDEASLLLQASAVGEDKAEAARALGCEGRGDIKWLVESM-------ASSRGEAGRRWLGWLNDGLTLPFSGTLTLAGLIAVLRPLMASNASGSGRGRGGEEEGGVGE-----VLSPARLQSTIWAVQGMSALVVNAPGESRMWSLDTMLPVVLGSLSGLLLAVQDRSRGQGXXXXXXXXXREAVSTEGVQXXXXXXXXXXXXXXXXXXXXXLLVAALEEALARVSSKYRSCLPDLRFPPVYAETINRFCAS 800
BLAST of mRNA_F-serratus_M_contig1199.1525.1 vs. uniprot
Match: D8LU93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU93_ECTSI) HSP 1 Score: 323 bits (828), Expect = 3.890e-96 Identity = 254/627 (40.51%), Postives = 330/627 (52.63%), Query Frame = 1
Query: 142 LREAHYKRQLAFALS-VGIPTFTWEVMMSLC------TAFP--RFFGDLQSLLMAWTSFVVAAFARYSVSEV-------------SALTVSQPSSVRAVAVMVAHAVAGFPLGLCAWKVV--RAGAKLTPQKGARGGLIAAGAACGVLSAVNFFSAAKHQLRLG-PRSTPLRKFLLTELVGSLGAGFIAGVKLASGYLVLRGLVELLPNQPLQPVLALFLGLPN------DHDSGARE------AGMLTVTYLVFLSTALNFALHLVSAVIMNLIILAP--------QDFVRLWGAKSSSASTARQSSWPLPQSPSAMLLDMLCIGHEAALWAAEKDFLKERE----SGG------SSYTPGSMGDWKEELELQRRSLALTSM-----------GTSAGTGQ--RSGWAVVTATWLPVWAQVAKAQALQSIALQAPRDVGIRAALYEVNITQVLRALCLELDSTNLLVQSFRLRENPSAVASSLGCEGRGDLGWLAQKMMSSSSAGSSSMGGPYRRALQYVQVRFTLPFRDTL-----FSVLLALWSSG------GREQEREARPGEGPEKPTLSSARAQSTVWAAQGVSALMVHAPGESRHVVLDAMLPVVLGSLAGLLLAVRSCS 1785
L+ H +R +AF + VG +W +++ LC T P R D S+++ +A F+RY V + S ++ P+ + +A +VAH + G LG AW R + GA GGL+A GAAC SAV F +H LRLG P + +L E GS+ G + G + +GYLVLR + ELLP + L++ LGLP+ D G + G L V YL+ STA NFALH +MN II+A QD R G +++AS +P SP+AMLLD L IGHE L AE+DFL+ R SGG SSYT G M DW EE ELQRR++AL M G G G R ++ +PVWAQVAKAQALQS+AL+AP D +R ALYEVNI QVLR LCLE+D +LL+Q+ + E+ + A +LGCEGR D+ WL + M +SS G RR L ++ +LPF TL +VL L +S GR E + GE LS AR QST+WA QG+SAL+V APGESR LD MLPVVLGSL+GLLLAV+ S
Sbjct: 17 LKRVHRQRLMAFGVVLVGCTLVSW-ILVILCWQLMPSTRGPGSRILADFLSIMVVALCHSLAVFSRYLVCDADDAPRRRAASGGFSYSALALPNLGQGLATVVAHWLIGMALGFFAWNFAAPRGAGGIAETSGALGGLVAGGAACSAWSAVCFLRERRHHLRLGLPSGAAMPAYLRGEAYGSVKEGLLCGAVIGAGYLVLRTVSELLPGSMVGRALSVLLGLPSAASTSEGTDGGGGQPVVGEGVGRLLVAYLIVASTAANFALHGFLTKVMNFIIVAATVDAASDEQD--RAGGRPAAAAS--------VPVSPAAMLLDSLSIGHETVLRTAERDFLQARGLDGGSGGAGGHGASSYTRGPMSDWTEETELQRRAVALACMEPPRTERRRGGGVGVGVGGIIRMPFSYTRGVVVPVWAQVAKAQALQSLALKAPCDKNLRVALYEVNIAQVLRTLCLEVDEASLLLQASVVGEDKAEAARALGCEGRRDIKWLVESM-------ASSRGEAGRRWLGWLNDGLSLPFSGTLTLAGLVAVLRPLMTSNASGSGRGRGGEEDGGVGE-----VLSPARMQSTIWAVQGMSALVVCAPGESRMWSLDTMLPVVLGSLSGLLLAVQDRS 620 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1199.1525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1199.1525.1 >prot_F-serratus_M_contig1199.1525.1 ID=prot_F-serratus_M_contig1199.1525.1|Name=mRNA_F-serratus_M_contig1199.1525.1|organism=Fucus serratus male|type=polypeptide|length=628bp MSMPVDCPPVARGSGPWLREAHYKRQLAFALSVGIPTFTWEVMMSLCTAFback to top mRNA from alignment at F-serratus_M_contig1199:264632..276227- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1199.1525.1 ID=mRNA_F-serratus_M_contig1199.1525.1|Name=mRNA_F-serratus_M_contig1199.1525.1|organism=Fucus serratus male|type=mRNA|length=11596bp|location=Sequence derived from alignment at F-serratus_M_contig1199:264632..276227- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1199:264632..276227- >mRNA_F-serratus_M_contig1199.1525.1 ID=mRNA_F-serratus_M_contig1199.1525.1|Name=mRNA_F-serratus_M_contig1199.1525.1|organism=Fucus serratus male|type=CDS|length=3768bp|location=Sequence derived from alignment at F-serratus_M_contig1199:264632..276227- (Fucus serratus male)back to top |