mRNA_F-serratus_M_contig1195.1489.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1195.1489.1
Unique NamemRNA_F-serratus_M_contig1195.1489.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1195.1489.1 vs. uniprot
Match: A0A6H5JYC6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYC6_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 4.530e-61
Identity = 93/122 (76.23%), Postives = 104/122 (85.25%), Query Frame = 1 
Query:    1 MKAKDRCTVVGCCNTTGSLMVPLAVISTSKSPMVFRHERKPPIPYYAQASAWLDSSICQGWFDEVFVSFVTSKTGRKVALVWDNCPGYIIQNDHPQITIIFLPPNVTSVYQPCDQGILYALK 366
            MKAKD+CTVV CCNTTGSL VPLAVI T+K PMVFRH RKPP PYYAQ SAWLD+SICQ WFDEVFV FV   TG+KVAL+W+NCPG+ I+ND PQI IIFLPP VTSV+QP D G+L+ALK
Sbjct:  333 MKAKDQCTVVACCNTTGSLKVPLAVIHTAKDPMVFRHVRKPPCPYYAQQSAWLDASICQRWFDEVFVPFVKENTGKKVALLWNNCPGHEIKNDDPQIVIIFLPPKVTSVFQPMDMGVLFALK 454
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BLAST of mRNA_F-serratus_M_contig1195.1489.1 vs. uniprot
Match: A0A6H5JEY2_9PHAE (HTH CENPB-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEY2_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 6.390e-61
Identity = 94/122 (77.05%), Postives = 106/122 (86.89%), Query Frame = 1 
Query:    1 MKAKDRCTVVGCCNTTGSLMVPLAVISTSKSPMVFRHERKPPIPYYAQASAWLDSSICQGWFDEVFVSFVTSKTGRKVALVWDNCPGYIIQNDHPQITIIFLPPNVTSVYQPCDQGILYALK 366
            MKAKDRCTVV CCNTTGSL VPLAVIST+K+PMVFRH R+ PIPYY+Q SAWLDS++CQ WFDEVFV FV   TG+KV L+WDNCPG+ I+ND PQI IIFLPPNVTSV+QP D GIL+ALK
Sbjct:  166 MKAKDRCTVVACCNTTGSLKVPLAVISTAKNPMVFRHIRRSPIPYYSQQSAWLDSTLCQRWFDEVFVPFVKKTTGKKVVLLWDNCPGHKIKNDDPQIIIIFLPPNVTSVFQPMDMGILFALK 287
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BLAST of mRNA_F-serratus_M_contig1195.1489.1 vs. uniprot
Match: A0A6H5JV64_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV64_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 5.890e-60
Identity = 94/122 (77.05%), Postives = 106/122 (86.89%), Query Frame = 1 
Query:    1 MKAKDRCTVVGCCNTTGSLMVPLAVISTSKSPMVFRHERKPPIPYYAQASAWLDSSICQGWFDEVFVSFVTSKTGRKVALVWDNCPGYIIQNDHPQITIIFLPPNVTSVYQPCDQGILYALK 366
            MKAKDRCTVV CCNTTGSL VPLAVIST+K+PMVFRH R+ PIPYY+Q SAWLDS++CQ WFDEVFV FV   TG+KV L+WDNCPG+ I+ND PQI IIFLPPNVTSV+QP D GIL+ALK
Sbjct:  371 MKAKDRCTVVACCNTTGSLKVPLAVISTAKNPMVFRHIRRSPIPYYSQQSAWLDSTLCQRWFDEVFVPFVKKTTGKKVVLLWDNCPGHKIKNDDPQIIIIFLPPNVTSVFQPMDMGILFALK 492
[Close]
BLAST of mRNA_F-serratus_M_contig1195.1489.1 vs. uniprot
Match: A0A6H5JEK6_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEK6_9PHAE)

HSP 1 Score: 199 bits (507), Expect = 5.870e-59
Identity = 92/122 (75.41%), Postives = 105/122 (86.07%), Query Frame = 1 
Query:    1 MKAKDRCTVVGCCNTTGSLMVPLAVISTSKSPMVFRHERKPPIPYYAQASAWLDSSICQGWFDEVFVSFVTSKTGRKVALVWDNCPGYIIQNDHPQITIIFLPPNVTSVYQPCDQGILYALK 366
            MKAKDRCTVV CCNTTGSLMVPLAVISTSK+ M+FRH RKPP PY+AQ SAWLD++ICQ WFDEVFV+FV  KT +KVAL+WDNCPG+ I ++ PQI I+FLPPNV SVYQP D GIL+ LK
Sbjct:  339 MKAKDRCTVVPCCNTTGSLMVPLAVISTSKNTMIFRHVRKPPCPYFAQESAWLDAAICQRWFDEVFVAFVKGKTSKKVALLWDNCPGHKINSNDPQIFIMFLPPNVISVYQPMDMGILFVLK 460
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BLAST of mRNA_F-serratus_M_contig1195.1489.1 vs. uniprot
Match: A0A6H5JNS8_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS8_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 1.560e-58
Identity = 94/125 (75.20%), Postives = 106/125 (84.80%), Query Frame = 1 
Query:    1 MKAKDRCTVVGCCNTTGSLMVP---LAVISTSKSPMVFRHERKPPIPYYAQASAWLDSSICQGWFDEVFVSFVTSKTGRKVALVWDNCPGYIIQNDHPQITIIFLPPNVTSVYQPCDQGILYALK 366
            MKAKDRCTVV CCNTTGSLMVP   LAVISTSK PMVFRH RKPP PY+AQ+SAWLD++ICQ WFDEVFV FV  KT +KVAL+WDNCPG+ I+++ PQI IIFLPPNV SVYQP + GIL+ LK
Sbjct:  200 MKAKDRCTVVACCNTTGSLMVPFXPLAVISTSKKPMVFRHVRKPPCPYFAQSSAWLDAAICQRWFDEVFVPFVKGKTSKKVALLWDNCPGHKIKSNDPQIVIIFLPPNVNSVYQPMNMGILFVLK 324
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BLAST of mRNA_F-serratus_M_contig1195.1489.1 vs. uniprot
Match: A0A6H5JV34_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV34_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 5.530e-58
Identity = 90/116 (77.59%), Postives = 97/116 (83.62%), Query Frame = 1 
Query:    1 MKAKDRCTVVGCCNTTGSLMVPLAVISTSKSPMVFRHERKPPIPYYAQASAWLDSSICQGWFDEVFVSFVTSKTGRKVALVWDNCPGYIIQNDHPQITIIFLPPNVTSVYQPCDQG 348
            MKAKDRCTVV CCNTTGSL VPLAVI T+K PMVFRH RKP  PYYAQ S WLDSS+CQ WFDEVFV FV   TG+KVAL+WDNCPG+ I+ND PQI IIFLPPNVTSV+QP D G
Sbjct:  153 MKAKDRCTVVSCCNTTGSLKVPLAVIHTAKDPMVFRHVRKPACPYYAQKSGWLDSSLCQRWFDEVFVPFVKKTTGKKVALLWDNCPGHRIKNDDPQIVIIFLPPNVTSVFQPMDMG 268
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BLAST of mRNA_F-serratus_M_contig1195.1489.1 vs. uniprot
Match: A0A6H5KA74_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA74_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 3.160e-56
Identity = 92/124 (74.19%), Postives = 103/124 (83.06%), Query Frame = 1 
Query:    1 MKAKDRCTVVGCCNTTGSLMVPLAVISTSKSPMVFRHERKPPIPY--YAQASAWLDSSICQGWFDEVFVSFVTSKTGRKVALVWDNCPGYIIQNDHPQITIIFLPPNVTSVYQPCDQGILYALK 366
            MKAKDRCTVV CCNTTGSL VPLA+I T+K PMVFR  RKP  PY  YAQ SAWLDS++CQ WFDEVFV FV   TG+K+AL+WDNCPG+ I+ND PQI IIFLPPNVTSV+QP D GIL+ALK
Sbjct:  450 MKAKDRCTVVACCNTTGSLKVPLAIIHTAKDPMVFRQVRKPACPYLYYAQKSAWLDSALCQRWFDEVFVPFVKKTTGKKMALLWDNCPGHRIKNDDPQIVIIFLPPNVTSVFQPMDMGILFALK 573
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BLAST of mRNA_F-serratus_M_contig1195.1489.1 vs. uniprot
Match: A0A6H5KIE7_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIE7_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 7.410e-55
Identity = 87/122 (71.31%), Postives = 100/122 (81.97%), Query Frame = 1 
Query:    1 MKAKDRCTVVGCCNTTGSLMVPLAVISTSKSPMVFRHERKPPIPYYAQASAWLDSSICQGWFDEVFVSFVTSKTGRKVALVWDNCPGYIIQNDHPQITIIFLPPNVTSVYQPCDQGILYALK 366
            MKAKDR T+V CCNTTGSLMVP AVISTSK  MVFRH RKPP  Y+ Q SAWLD++ICQ WFD+VFV FV  KT +KVAL+WDNCPG+ I+++ PQI IIFLPP +TSVYQP D GIL+ LK
Sbjct:    1 MKAKDRWTMVACCNTTGSLMVPFAVISTSKKTMVFRHVRKPPCSYFDQESAWLDAAICQ-WFDKVFVPFVKGKTSKKVALLWDNCPGHKIKSNDPQIVIIFLPPEITSVYQPMDMGILFVLK 121
[Close]
BLAST of mRNA_F-serratus_M_contig1195.1489.1 vs. uniprot
Match: A0A6H5K051_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K051_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 3.880e-52
Identity = 86/122 (70.49%), Postives = 96/122 (78.69%), Query Frame = 1 
Query:    1 MKAKDRCTVVGCCNTTGSLMVPLAVISTSKSPMVFRHERKPPIPYYAQASAWLDSSICQGWFDEVFVSFVTSKTGRKVALVWDNCPGYIIQNDHPQITIIFLPPNVTSVYQPCDQGILYALK 366
            MKAKDRCTVV CCNT GSLMVPLAVISTSK  +VFR  RKPP PY+AQ SAWLD++I Q WFDEVFV FV  KT  KVAL+WD  PG+ I+++ PQI +IFLPPNV SVYQP   GIL  LK
Sbjct:  179 MKAKDRCTVVACCNTAGSLMVPLAVISTSKKRVVFRLVRKPPCPYFAQDSAWLDAAIYQRWFDEVFVPFVKGKTSTKVALLWDKGPGHKIKSNDPQIVVIFLPPNVPSVYQPMGMGILLVLK 300
[Close]
BLAST of mRNA_F-serratus_M_contig1195.1489.1 vs. uniprot
Match: A0A6H5KQ75_9PHAE (HTH CENPB-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ75_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 1.580e-47
Identity = 81/122 (66.39%), Postives = 91/122 (74.59%), Query Frame = 1 
Query:    1 MKAKDRCTVVGCCNTTGSLMVPLAVISTSKSPMVFRHERKPPIPYYAQASAWLDSSICQGWFDEVFVSFVTSKTGRKVALVWDNCPGYIIQNDHPQITIIFLPPNVTSVYQPCDQGILYALK 366
            MKAKDRCTVV CCNTTGSL VPLAVI T+K PMVFRH RKP  PYYA+ SAWLDS++CQ WFDEVFV FV   TG+KVAL+WDNCPG+ I+ND PQI              P + GIL+ALK
Sbjct:  317 MKAKDRCTVVACCNTTGSLKVPLAVIHTAKDPMVFRHVRKPACPYYARKSAWLDSALCQRWFDEVFVPFVKKTTGKKVALLWDNCPGHRIKNDDPQI--------------PMNMGILFALK 424
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1195.1489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JYC6_9PHAE4.530e-6176.23DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JEY2_9PHAE6.390e-6177.05HTH CENPB-type domain-containing protein n=2 Tax=E... [more]
A0A6H5JV64_9PHAE5.890e-6077.05HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JEK6_9PHAE5.870e-5975.41DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JNS8_9PHAE1.560e-5875.20HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JV34_9PHAE5.530e-5877.59HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5KA74_9PHAE3.160e-5674.19HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5KIE7_9PHAE7.410e-5571.31DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K051_9PHAE3.880e-5270.49HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5KQ75_9PHAE1.580e-4766.39HTH CENPB-type domain-containing protein (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1195contigF-serratus_M_contig1195:62676..63041 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score114.8
Seed ortholog evalue2.9e-23
Seed eggNOG ortholog6669.EFX80188
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Jerky protein homolog-like
EggNOG OGs38HJW@33154,3BCG5@33208,3CXR0@33213,420II@6656,KOG3105@1,KOG3105@2759
COG Functional cat.BD
Best tax levelArthropoda
Best eggNOG OGNA|NA|NA
Exons1
Model size366
Cds size366
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929090.8654509-CDS-F-serratus_M_contig1195:62675..630411622929090.8654509-CDS-F-serratus_M_contig1195:62675..63041Fucus serratus maleCDSF-serratus_M_contig1195 62676..63041 -
1690962700.5476296-CDS-F-serratus_M_contig1195:62675..630411690962700.5476296-CDS-F-serratus_M_contig1195:62675..63041Fucus serratus maleCDSF-serratus_M_contig1195 62676..63041 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1195.1489.1prot_F-serratus_M_contig1195.1489.1Fucus serratus malepolypeptideF-serratus_M_contig1195 62676..63041 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1195.1489.1

>prot_F-serratus_M_contig1195.1489.1 ID=prot_F-serratus_M_contig1195.1489.1|Name=mRNA_F-serratus_M_contig1195.1489.1|organism=Fucus serratus male|type=polypeptide|length=122bp
MKAKDRCTVVGCCNTTGSLMVPLAVISTSKSPMVFRHERKPPIPYYAQAS
AWLDSSICQGWFDEVFVSFVTSKTGRKVALVWDNCPGYIIQNDHPQITII
FLPPNVTSVYQPCDQGILYALK
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mRNA from alignment at F-serratus_M_contig1195:62676..63041-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1195.1489.1 ID=mRNA_F-serratus_M_contig1195.1489.1|Name=mRNA_F-serratus_M_contig1195.1489.1|organism=Fucus serratus male|type=mRNA|length=366bp|location=Sequence derived from alignment at F-serratus_M_contig1195:62676..63041- (Fucus serratus male)
ATGAAGGCCAAGGACCGATGCACGGTTGTCGGCTGCTGCAACACGACCGG
CTCGCTCATGGTGCCGCTAGCCGTCATCAGCACGTCGAAAAGCCCGATGG
TTTTCCGACATGAGCGCAAACCACCCATCCCCTACTACGCCCAAGCAAGC
GCCTGGCTCGATTCATCCATCTGTCAGGGGTGGTTCGACGAGGTCTTTGT
CTCCTTCGTTACCAGCAAGACAGGGAGGAAGGTGGCCCTTGTGTGGGATA
ACTGCCCAGGCTACATAATCCAGAACGACCATCCACAAATCACCATCATA
TTCTTGCCTCCAAACGTCACGTCCGTCTACCAGCCCTGCGATCAGGGAAT
CCTGTATGCCCTCAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1195:62676..63041-

>mRNA_F-serratus_M_contig1195.1489.1 ID=mRNA_F-serratus_M_contig1195.1489.1|Name=mRNA_F-serratus_M_contig1195.1489.1|organism=Fucus serratus male|type=CDS|length=732bp|location=Sequence derived from alignment at F-serratus_M_contig1195:62676..63041- (Fucus serratus male)
ATGAAGGCCAAGGACCGATGCACGGTTGTCGGCTGCTGCAACACGACCGG
CTCGCTCATGGTGCCGCTAGCCGTCATCAGCACGTCGAAAAGCCCGATGG
TTTTCCGACATGAGCGCAAACCACCCATCCCCTACTACGCCCAAGCAAGC
GCCTGGCTCGATTCATCCATCTGTCAGGGGTGGTTCGACGAGGTCTTTGT
CTCCTTCGTTACCAGCAAGACAGGGAGGAAGGTGGCCCTTGTGTGGGATA
ACTGCCCAGGCTACATAATCCAGAACGACCATCCACAAATCACCATCATA
TTCTTGCCTCCAAACGTCACGTCCGTCTACCAGCCCTGCGATCAGGGAAT
CCTGTATGCCCTCAAGATGAAGGCCAAGGACCGATGCACGGTTGTCGGCT
GCTGCAACACGACCGGCTCGCTCATGGTGCCGCTAGCCGTCATCAGCACG
TCGAAAAGCCCGATGGTTTTCCGACATGAGCGCAAACCACCCATCCCCTA
CTACGCCCAAGCAAGCGCCTGGCTCGATTCATCCATCTGTCAGGGGTGGT
TCGACGAGGTCTTTGTCTCCTTCGTTACCAGCAAGACAGGGAGGAAGGTG
GCCCTTGTGTGGGATAACTGCCCAGGCTACATAATCCAGAACGACCATCC
ACAAATCACCATCATATTCTTGCCTCCAAACGTCACGTCCGTCTACCAGC
CCTGCGATCAGGGAATCCTGTATGCCCTCAAG
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