mRNA_F-serratus_M_contig1183.1463.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1183.1463.1
Unique NamemRNA_F-serratus_M_contig1183.1463.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1183.1463.1 vs. uniprot
Match: A0A6H5KEU8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU8_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 2.260e-17
Identity = 34/58 (58.62%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    1 ELIYRWNLDRSISNRGLNGSIGGFYDQPIIEAFQKMSWNLFGKATFSDWIPTGAFADT 174
            E  YRWNL +S+ NRGL+ ++GGFYDQPI+EA Q+M+  L+GKA +S W+PT A+ DT
Sbjct:  491 EYNYRWNLRQSMKNRGLDEAVGGFYDQPILEAIQRMTSKLYGKAKYSQWLPTSAYGDT 548
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BLAST of mRNA_F-serratus_M_contig1183.1463.1 vs. uniprot
Match: A0A6H5JD89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD89_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 5.590e-17
Identity = 33/58 (56.90%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    1 ELIYRWNLDRSISNRGLNGSIGGFYDQPIIEAFQKMSWNLFGKATFSDWIPTGAFADT 174
            E  YRWNL +S+ NRGL+ ++GGFYDQP++EA Q+M+  L+GKA +S W+PT A+ DT
Sbjct:  316 EYNYRWNLRQSMKNRGLDEAVGGFYDQPMLEAIQRMTSKLYGKAKYSQWLPTSAYGDT 373
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BLAST of mRNA_F-serratus_M_contig1183.1463.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 5.790e-17
Identity = 33/58 (56.90%), Postives = 46/58 (79.31%), Query Frame = 1 
Query:    1 ELIYRWNLDRSISNRGLNGSIGGFYDQPIIEAFQKMSWNLFGKATFSDWIPTGAFADT 174
            E  YRWNL +S+ NRGL+ ++GGFYDQP++EA Q+M+  L+GKA +S W+PT A+ DT
Sbjct:  889 EYNYRWNLRQSMKNRGLDEAVGGFYDQPMLEAIQRMTSKLYGKAKYSQWLPTSAYGDT 946
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1183.1463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KEU8_9PHAE2.260e-1758.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JD89_9PHAE5.590e-1756.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JET4_9PHAE5.790e-1756.903'-5' exonuclease domain-containing protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1183contigF-serratus_M_contig1183:170624..170998 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size176
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929086.558284-CDS-F-serratus_M_contig1183:170624..1706961622929086.558284-CDS-F-serratus_M_contig1183:170624..170696Fucus serratus maleCDSF-serratus_M_contig1183 170625..170696 -
1690962698.9259079-CDS-F-serratus_M_contig1183:170624..1706961690962698.9259079-CDS-F-serratus_M_contig1183:170624..170696Fucus serratus maleCDSF-serratus_M_contig1183 170625..170696 -
1622929086.5761058-CDS-F-serratus_M_contig1183:170896..1709981622929086.5761058-CDS-F-serratus_M_contig1183:170896..170998Fucus serratus maleCDSF-serratus_M_contig1183 170897..170998 -
1690962698.9342608-CDS-F-serratus_M_contig1183:170896..1709981690962698.9342608-CDS-F-serratus_M_contig1183:170896..170998Fucus serratus maleCDSF-serratus_M_contig1183 170897..170998 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1183.1463.1prot_F-serratus_M_contig1183.1463.1Fucus serratus malepolypeptideF-serratus_M_contig1183 170625..170998 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1183.1463.1

>prot_F-serratus_M_contig1183.1463.1 ID=prot_F-serratus_M_contig1183.1463.1|Name=mRNA_F-serratus_M_contig1183.1463.1|organism=Fucus serratus male|type=polypeptide|length=58bp
ELIYRWNLDRSISNRGLNGSIGGFYDQPIIEAFQKMSWNLFGKATFSDWI
PTGAFADT
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mRNA from alignment at F-serratus_M_contig1183:170624..170998-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1183.1463.1 ID=mRNA_F-serratus_M_contig1183.1463.1|Name=mRNA_F-serratus_M_contig1183.1463.1|organism=Fucus serratus male|type=mRNA|length=375bp|location=Sequence derived from alignment at F-serratus_M_contig1183:170624..170998- (Fucus serratus male)
GAGTTGATCTACCGCTGGAACCTGGACCGGAGCATCAGCAACAGAGGTCT
CAATGGTTCCATCGGTGGTTTCTATGATCAACCAATCATCGAAGCTTTCC
AGGTGCGCTGGGTCTGTGTTTGAACTCAGCTCAGAGTATGTCGAGGTATC
AGTGTGAAACTACTCTTGGCCCCACCTGGTTTTTCCCCACCTGGTAACCG
ACACCACCCTCGACTATCCACCTATTTATGTTTTTTCCCAGCCGGTGATT
TATTAACAACGTTACCTCACTGTTTTAGTTTCGAACCCCACTCTTTCTGT
AGAAAATGAGCTGGAACCTGTTCGGCAAGGCCACGTTCTCCGATTGGATA
CCTACTGGCGCATTCGCTGATACCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1183:170624..170998-

>mRNA_F-serratus_M_contig1183.1463.1 ID=mRNA_F-serratus_M_contig1183.1463.1|Name=mRNA_F-serratus_M_contig1183.1463.1|organism=Fucus serratus male|type=CDS|length=348bp|location=Sequence derived from alignment at F-serratus_M_contig1183:170624..170998- (Fucus serratus male)
GAGTTGATCTACCGCTGGAACCTGGACCGGAGCATCAGCAACAGAGGTCT
CAATGGTTCCATCGGTGGTTTCTATGATCAACCAATCATCGAAGCTTTCC
AGGAGTTGATCTACCGCTGGAACCTGGACCGGAGCATCAGCAACAGAGGT
CTCAATGGTTCCATCGGTGGTTTCTATGATCAACCAATCATCGAAGCTTT
CCAGAAAATGAGCTGGAACCTGTTCGGCAAGGCCACGTTCTCCGATTGGA
TACCTACTGGCGCATTCGCTGATACCAAAATGAGCTGGAACCTGTTCGGC
AAGGCCACGTTCTCCGATTGGATACCTACTGGCGCATTCGCTGATACC
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