mRNA_F-serratus_M_contig1173.1420.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1173.1420.1
Unique NamemRNA_F-serratus_M_contig1173.1420.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1173.1420.1 vs. uniprot
Match: F0W6E8_9STRA (Putative polyprotein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W6E8_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 7.160e-8
Identity = 35/116 (30.17%), Postives = 62/116 (53.45%), Query Frame = 1 
Query:  118 MMEVDKLAGDLHRLGDKSVTELRRCVIIVSGLSADYEMECRMLENNPDGLNMGEIERVVGNQYNRLLRQQQDSKALSASRGTITANRENGKNRRPSNKFEGKCFNCGKRGHRAVDC 465
            MM+ DKL  ++  + D  + +    VI++  L  D++   R+LE+ P G+++   +  +  ++ R+  ++    AL A+RG I+  +          +F GKCF CGKRGHR  +C
Sbjct:    4 MMKFDKLTMEIAAMED-GLNDQEMIVILLGSLPVDFDPIVRILESMP-GIDLISAKGTLQREWERMQNRESSEVALQATRGRISKKKYQRHPGTLGEEFNGKCFQCGKRGHRKNEC 117
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BLAST of mRNA_F-serratus_M_contig1173.1420.1 vs. uniprot
Match: F0X0S7_9STRA (Putative polyprotein n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X0S7_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.060e-6
Identity = 33/116 (28.45%), Postives = 59/116 (50.86%), Query Frame = 1 
Query:  118 MMEVDKLAGDLHRLGDKSVTELRRCVIIVSGLSADYEMECRMLENNPDGLNMGEIERVVGNQYNRLLRQQQDSKALSASRGTITANRENGKNRRPSNKFEGKCFNCGKRGHRAVDC 465
            MM+ DKL  ++  +GD  + +    VI++  L  +++   R+LEN   G+++   +     ++ R+  ++     L  +RG I+  +          +F GKCF CGKRGHR  +C
Sbjct:    4 MMKFDKLTMEMAAMGD-GLNDQEMLVILLGSLPLNFDPIVRILENIT-GIDLMSAKETPRREWGRIKNRESSEVTLEVTRGRISKKKYQRNPGTVGEEFNGKCFQCGKRGHRKYEC 117
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BLAST of mRNA_F-serratus_M_contig1173.1420.1 vs. uniprot
Match: A0A329S4C9_9STRA (CCHC-type domain-containing protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329S4C9_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.450e-6
Identity = 40/154 (25.97%), Postives = 74/154 (48.05%), Query Frame = 1 
Query:    4 AWRNLELHYRAKGTREILRLSHKINGKTMEPGSDPFKFMMEVDKLAGDLHRLGDKSVTELRRCVIIVSGLSADYEMECRMLENNPDGLNMGEIERVVGNQYNRLLRQQQDSKALSASRGTITANRENGKNRRPSNKFEGKCFNCGKRGHRAVDC 465
            AW  LE  +  +     + L+ K+N  T+  G + +  +    +L+  L   G+  + E R+ VI++  L  +Y +  +++E+   G+ M +   ++  +Y     +  +    SA        R+  KN +P +K  GKCFNCGK GH+  +C
Sbjct:   66 AWEVLEGFFNRQTMHNRVALNQKMNEFTLASGGNLYDHLTRFKELSTALAAAGEP-LDEQRQLVILLGNLPREYHVTVKIIESIA-GVTMLQAAEMLKREYAESRHEDTEVAFHSA--------RQRNKNTKPQSKCRGKCFNCGKIGHKEAEC 209
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1173.1420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
F0W6E8_9STRA7.160e-830.17Putative polyprotein n=1 Tax=Albugo laibachii Nc14... [more]
F0X0S7_9STRA1.060e-628.45Putative polyprotein n=1 Tax=Albugo laibachii Nc14... [more]
A0A329S4C9_9STRA1.450e-625.97CCHC-type domain-containing protein n=1 Tax=Phytop... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1173contigF-serratus_M_contig1173:109945..110409 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size465
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929077.1761386-CDS-F-serratus_M_contig1173:109944..1104091622929077.1761386-CDS-F-serratus_M_contig1173:109944..110409Fucus serratus maleCDSF-serratus_M_contig1173 109945..110409 +
1690962695.1030886-CDS-F-serratus_M_contig1173:109944..1104091690962695.1030886-CDS-F-serratus_M_contig1173:109944..110409Fucus serratus maleCDSF-serratus_M_contig1173 109945..110409 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1173.1420.1prot_F-serratus_M_contig1173.1420.1Fucus serratus malepolypeptideF-serratus_M_contig1173 109945..110409 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1173.1420.1

>prot_F-serratus_M_contig1173.1420.1 ID=prot_F-serratus_M_contig1173.1420.1|Name=mRNA_F-serratus_M_contig1173.1420.1|organism=Fucus serratus male|type=polypeptide|length=155bp
EAWRNLELHYRAKGTREILRLSHKINGKTMEPGSDPFKFMMEVDKLAGDL
HRLGDKSVTELRRCVIIVSGLSADYEMECRMLENNPDGLNMGEIERVVGN
QYNRLLRQQQDSKALSASRGTITANRENGKNRRPSNKFEGKCFNCGKRGH
RAVDC
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mRNA from alignment at F-serratus_M_contig1173:109945..110409+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1173.1420.1 ID=mRNA_F-serratus_M_contig1173.1420.1|Name=mRNA_F-serratus_M_contig1173.1420.1|organism=Fucus serratus male|type=mRNA|length=465bp|location=Sequence derived from alignment at F-serratus_M_contig1173:109945..110409+ (Fucus serratus male)
GAGGCATGGCGTAACCTTGAACTTCACTATAGAGCAAAGGGTACCAGAGA
AATTCTTCGCTTGTCGCATAAAATAAACGGAAAAACAATGGAGCCAGGTA
GTGATCCATTCAAATTCATGATGGAAGTCGACAAGCTGGCAGGAGACTTG
CACCGTCTAGGCGACAAATCAGTGACTGAACTAAGGAGATGCGTGATTAT
TGTGTCCGGTTTGTCTGCTGATTATGAGATGGAATGCCGTATGCTAGAGA
ACAACCCCGACGGTCTTAACATGGGTGAGATTGAACGTGTTGTAGGAAAC
CAGTACAACAGACTTCTCAGACAGCAACAGGACTCGAAGGCATTGTCAGC
GTCGAGGGGCACCATCACCGCGAACCGAGAAAACGGGAAGAATAGGAGAC
CCAGCAACAAGTTCGAAGGAAAATGCTTCAACTGTGGAAAGAGAGGGCAC
CGCGCTGTGGATTGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1173:109945..110409+

>mRNA_F-serratus_M_contig1173.1420.1 ID=mRNA_F-serratus_M_contig1173.1420.1|Name=mRNA_F-serratus_M_contig1173.1420.1|organism=Fucus serratus male|type=CDS|length=930bp|location=Sequence derived from alignment at F-serratus_M_contig1173:109945..110409+ (Fucus serratus male)
GAGGCATGGCGTAACCTTGAACTTCACTATAGAGCAAAGGGTACCAGAGA
AATTCTTCGCTTGTCGCATAAAATAAACGGAAAAACAATGGAGCCAGGTA
GTGATCCATTCAAATTCATGATGGAAGTCGACAAGCTGGCAGGAGACTTG
CACCGTCTAGGCGACAAATCAGTGACTGAACTAAGGAGATGCGTGATTAT
TGTGTCCGGTTTGTCTGCTGATTATGAGATGGAATGCCGTATGCTAGAGA
ACAACCCCGACGGTCTTAACATGGGTGAGATTGAACGTGTTGTAGGAAAC
CAGTACAACAGACTTCTCAGACAGCAACAGGACTCGAAGGCATTGTCAGC
GTCGAGGGGCACCATCACCGCGAACCGAGAAAACGGGAAGAATAGGAGAC
CCAGCAACAAGTTCGAAGGAAAATGCTTCAACTGTGGAAAGAGAGGGCAC
CGCGCTGTGGATTGTGAGGCATGGCGTAACCTTGAACTTCACTATAGAGC
AAAGGGTACCAGAGAAATTCTTCGCTTGTCGCATAAAATAAACGGAAAAA
CAATGGAGCCAGGTAGTGATCCATTCAAATTCATGATGGAAGTCGACAAG
CTGGCAGGAGACTTGCACCGTCTAGGCGACAAATCAGTGACTGAACTAAG
GAGATGCGTGATTATTGTGTCCGGTTTGTCTGCTGATTATGAGATGGAAT
GCCGTATGCTAGAGAACAACCCCGACGGTCTTAACATGGGTGAGATTGAA
CGTGTTGTAGGAAACCAGTACAACAGACTTCTCAGACAGCAACAGGACTC
GAAGGCATTGTCAGCGTCGAGGGGCACCATCACCGCGAACCGAGAAAACG
GGAAGAATAGGAGACCCAGCAACAAGTTCGAAGGAAAATGCTTCAACTGT
GGAAAGAGAGGGCACCGCGCTGTGGATTGT
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