mRNA_F-serratus_M_contig117.1384.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig117.1384.1
Unique NamemRNA_F-serratus_M_contig117.1384.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig117.1384.1 vs. uniprot
Match: A0A6H5JIE4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIE4_9PHAE)

HSP 1 Score: 278 bits (711), Expect = 1.490e-77
Identity = 131/209 (62.68%), Postives = 159/209 (76.08%), Query Frame = 1
Query: 1462 SAGGGVEFKRGSPEELAQRVKHVEAELARKLLAEEDAKSLLDIWVEKAREFVLTRTVPPTDAECDFNWSRLRCEPKCLCGSRLRFGDYTPGRSCRLLHPWERSSDC----------------------EDAWDPSDEPALRRLGAATKRALGSVKRAYDARVAPATDADCTFDLETRRCQPQPACRFRFRWGDISLSNACRLV*EEAAD 2022
            S+G   +F RGSPEE+AQRV+ +EAEL RKLLAEEDAKSLLDIWVE+ RE+VLT+TVPPTDAECDFNWSRLRCEPKC CG+RLRFGDYTPGR+CRLLHPWER+ +                         AWDPSDEPA+RR+ AA    LG +++AY+ARVAP +D++C+F  ETRRC+PQP CR RFRWGD++ S+ACRL    ++D
Sbjct:  615 SSGSTADFPRGSPEEMAQRVRDMEAELVRKLLAEEDAKSLLDIWVERTREYVLTQTVPPTDAECDFNWSRLRCEPKCTCGARLRFGDYTPGRACRLLHPWERNPELCGSGVNGDDGXXXXXXXXXXXXXXAWDPSDEPAVRRVVAAVAGVLGGLRQAYEARVAPPSDSECSFSFETRRCEPQPLCRLRFRWGDLTPSSACRLAGGASSD 823          
BLAST of mRNA_F-serratus_M_contig117.1384.1 vs. uniprot
Match: D7FHY4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY4_ECTSI)

HSP 1 Score: 273 bits (698), Expect = 4.200e-77
Identity = 130/205 (63.41%), Postives = 157/205 (76.59%), Query Frame = 1
Query: 1471 GGVEFKRGSPEELAQRVKHVEAELARKLLAEEDAKSLLDIWVEKAREFVLTRTVPPTDAECDFNWSRLRCEPKCLCGSRLRFGDYTPGRSCRLLHPWERSS-------DCEDA--------------WDPSDEPALRRLGAATKRALGSVKRAYDARVAPATDADCTFDLETRRCQPQPACRFRFRWGDISLSNACRLV*EEAAD 2022
            G   F RGSPE++AQRV+ +EAEL RKLLAEEDAKSLLDIWVE+ RE+VLT+TVPPTDAECDFNWSRLRCEPKC CG+RLRFGDYTPGR+CRLLHPWER+        D +D               WDPSDEPA+RR+ AA   ALG +++AY+ RVAP +D++C+F  ETRRC+PQP CR RFRWGD++ S+ACRL    ++D
Sbjct:  454 GAAGFPRGSPEDMAQRVRDMEAELVRKLLAEEDAKSLLDIWVERTREYVLTQTVPPTDAECDFNWSRLRCEPKCTCGARLRFGDYTPGRACRLLHPWERNPELCGSGVDGDDXXXXXXXXXXXXXXXWDPSDEPAVRRVVAAAAGALGGLRQAYEERVAPPSDSECSFSFETRRCEPQPLCRLRFRWGDLTPSSACRLAGGASSD 658          
BLAST of mRNA_F-serratus_M_contig117.1384.1 vs. uniprot
Match: A0A6H5JPF6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JPF6_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 7.500e-21
Identity = 58/151 (38.41%), Postives = 79/151 (52.32%), Query Frame = 1
Query: 1567 DAKSLLDIWVEKAREFVLTRTVPPTDAECDFNWSRLRCEPKCLCGSRLRFGDYTPGRSCRLLHPWERSSDCEDAWDPSDEPALRRLGAATKRALGSVKRAYDARVAPATDADCTFDL----ETRR--CQPQPACRFRFRWGDISLSNACRL 2001
            D ++LL+       ++V TR  P TD ECD++W R RC+P+C C  + RFGDY PGRSCRL    ER     D    +D   L +L A   +   S  R     V P TD DC F L    E ++  C P+  C F +++GD+    +CRL
Sbjct:   91 DDEALLERIGRLVVQWVNTRLTPRTDEECDWSWGRWRCDPQCSCQYKYRFGDYAPGRSCRLRPEGERGLATCDPERGNDVSLLEKLAAFVGKVGRSTWRFTAEHVVPQTDKDCRFSLAHSLEEKKLVCTPRRHCAFHYKFGDVHPGRSCRL 241          
BLAST of mRNA_F-serratus_M_contig117.1384.1 vs. uniprot
Match: A0A7S3NN76_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NN76_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 5.250e-18
Identity = 63/184 (34.24%), Postives = 98/184 (53.26%), Query Frame = 1
Query: 1501 EELAQRVKHVEAELARKLL--AEEDAKSLLDIWVEKAREFVLTRTVPPTDAECDFNWSRLRCEPKCLCGSRLRFGDYTPGRSCRLLHPWERSSDCEDAWDPSDEPALRRLGAATKRALGSVKRAYDA-----RVAPATDADCTFDLETRRCQPQPACRFRFRWGDISLSNACRLV*EEAADLLI 2031
            +EL +RV  +E +L    L    ++  SLL+++     +FVLT+ +P T  EC ++W++  C PKC C    R+GD T  R+CRL+   E + +C D     +  +L +LG A    +GS     +A     + AP +D  C F  +  RC+PQP C FR+++GD  L  ACR +    A  +I
Sbjct:   92 KELRERVDVLEEQLRSANLPTVPDEEMSLLEMFAGATSDFVLTKLLPRTHPECRWHWAKAVCVPKCKCQLAYRWGDLTMSRACRLVD--EPNPNC-DTDVRHERGSLEKLGDAIW--IGSTTIWQNANEFLQQAAPPSDIRCDFSWQNLRCEPQPYCAFRYKFGDYHLGRACRRLDPVIATTVI 270          
BLAST of mRNA_F-serratus_M_contig117.1384.1 vs. uniprot
Match: A0A7S2S8F9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S8F9_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.620e-16
Identity = 58/174 (33.33%), Postives = 87/174 (50.00%), Query Frame = 1
Query: 1567 DAKSLLDIWVEKAREFVLTRTVPPTDAECDFNWSRLRCEPKCLCGSRLRFGDYTPGRSCRLLH--PWE--------RSSD----CE-DAWDPSDEPALRRLGAATKR-----------ALGS---------VKRAYDARV-APATDADCTFDLETRRCQPQPACRFRFRWGDIS 1980
            D +SL++++ +  R +++    P TD EC ++W   RCEP+CLC  + + GDY+P RSCRL+   P E         S D    C+ DA +PS    +R   AA +R           ALG+         V+     R  AP TD +C F  +  +C P+  C F++R+GD S
Sbjct:    1 DERSLMEVFGDATRHWLIQHLAPRTDRECHWSWRLARCEPRCLCTFQPKLGDYSPNRSCRLVQKSPAEITGGAGNDNSRDGNGVCDPDAPEPSGWQKVRHATAAMRRGSLRSLSSCVQALGTGASSLSRLAVRLGNGLRSRAPVTDEECHFVFDGLQCVPEEFCSFQYRFGDYS 174          
BLAST of mRNA_F-serratus_M_contig117.1384.1 vs. uniprot
Match: A0A7R9ZJ95_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZJ95_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 8.990e-11
Identity = 35/86 (40.70%), Postives = 52/86 (60.47%), Query Frame = 1
Query: 1558 AEEDAKSLLDIWVEKAREFVLTRTVPPTDAECDFNWSRLRCEPKCLCGSRLRFGDYTPGRSCRLLHPWERSSDCEDAWDPSDEPAL 1815
            AE+D ++LLD++ E A+EF+  + +PPTD +C ++W   RCEP C C    + GDY  GRSCR     +    C++  DP+   AL
Sbjct:   96 AEQDDRTLLDVFGEAAKEFLTQKLIPPTDTDCRWDWRFARCEPFCACAFAPQRGDYHLGRSCRR----KTKVACDEPQDPTKVQAL 177          
BLAST of mRNA_F-serratus_M_contig117.1384.1 vs. uniprot
Match: A0A7S0CLR0_9STRA (Hypothetical protein n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CLR0_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 9.030e-7
Identity = 31/82 (37.80%), Postives = 44/82 (53.66%), Query Frame = 1
Query: 1555 LAEEDAKSLLDIWVEKAREFVLTRTVPPTDAECDFNWSRLRCEPKCLCGS-----RLRFGDYTPGRSCRLLHPWERSSDCED 1785
            L E+D ++ LD + E ++  +    +P TDAECDF+W  LRCEP  +CG         FGD+  GRSC +       S  +D
Sbjct:  141 LDEDDERTYLDTFGEVSKIIMTHHVIPETDAECDFDWRSLRCEPHDICGGGGCRFEYEFGDFHLGRSCWIFRDRNNKSVNQD 222          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig117.1384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JIE4_9PHAE1.490e-7762.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHY4_ECTSI4.200e-7763.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPF6_9PHAE7.500e-2138.41Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3NN76_9STRA5.250e-1834.24Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2S8F9_9STRA3.620e-1633.33Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7R9ZJ95_9STRA8.990e-1140.70Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S0CLR0_9STRA9.030e-737.80Hypothetical protein n=2 Tax=Proboscia inermis Tax... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig117contigF-serratus_M_contig117:14732..19444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score273.9
Seed ortholog evalue2e-70
Seed eggNOG ortholog2880.D7FHY4
Hectar predicted targeting categorysignal peptide
EggNOG OGs2E73F@1,2SDR3@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_006360.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size2496
Cds size1998
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig117.1384.1prot_F-serratus_M_contig117.1384.1Fucus serratus malepolypeptideF-serratus_M_contig117 14741..18955 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929072.8854458-UTR-F-serratus_M_contig117:14731..147401622929072.8854458-UTR-F-serratus_M_contig117:14731..14740Fucus serratus maleUTRF-serratus_M_contig117 14732..14740 +
1690962692.87438-UTR-F-serratus_M_contig117:14731..147401690962692.87438-UTR-F-serratus_M_contig117:14731..14740Fucus serratus maleUTRF-serratus_M_contig117 14732..14740 +
1622929072.9708817-UTR-F-serratus_M_contig117:18955..194441622929072.9708817-UTR-F-serratus_M_contig117:18955..19444Fucus serratus maleUTRF-serratus_M_contig117 18956..19444 +
1690962692.9077284-UTR-F-serratus_M_contig117:18955..194441690962692.9077284-UTR-F-serratus_M_contig117:18955..19444Fucus serratus maleUTRF-serratus_M_contig117 18956..19444 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929072.9001706-CDS-F-serratus_M_contig117:14740..163201622929072.9001706-CDS-F-serratus_M_contig117:14740..16320Fucus serratus maleCDSF-serratus_M_contig117 14741..16320 +
1690962692.8834863-CDS-F-serratus_M_contig117:14740..163201690962692.8834863-CDS-F-serratus_M_contig117:14740..16320Fucus serratus maleCDSF-serratus_M_contig117 14741..16320 +
1622929072.930351-CDS-F-serratus_M_contig117:18001..183771622929072.930351-CDS-F-serratus_M_contig117:18001..18377Fucus serratus maleCDSF-serratus_M_contig117 18002..18377 +
1690962692.8910096-CDS-F-serratus_M_contig117:18001..183771690962692.8910096-CDS-F-serratus_M_contig117:18001..18377Fucus serratus maleCDSF-serratus_M_contig117 18002..18377 +
1622929072.9572015-CDS-F-serratus_M_contig117:18913..189551622929072.9572015-CDS-F-serratus_M_contig117:18913..18955Fucus serratus maleCDSF-serratus_M_contig117 18914..18955 +
1690962692.898675-CDS-F-serratus_M_contig117:18913..189551690962692.898675-CDS-F-serratus_M_contig117:18913..18955Fucus serratus maleCDSF-serratus_M_contig117 18914..18955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig117.1384.1

>prot_F-serratus_M_contig117.1384.1 ID=prot_F-serratus_M_contig117.1384.1|Name=mRNA_F-serratus_M_contig117.1384.1|organism=Fucus serratus male|type=polypeptide|length=666bp
MPRVCNLMRSIAGKRKRLSTSGIVQRCTVLFAFLLLLNGTAAHEEQIPEP
MTSPVMVENHETNRTQVDVDKQGDSTFPPEKAMLDDSSRGTNVHDVESLD
GPNDSERNGKNVPGEANKQDVALSADFPAADAMEALQQQKEPPLGDYAET
RGDHAYAYTPYSDAATHPDGDIGAPHPEIEASTRCEGKSEDEKEAGGSVL
VSTARHESSERANVSSVMEQKGNGRGETNGSQQGEMVGGEEQGQREEERN
VGIGGSELSQTPVSPFTAGFDQIEQPVCLTVAVGDQAISRDTGTGAGHVL
GSIGVDEEDRGAANTISGPSHFGAHKRSGGPPDETQVPGTIISVAAKETT
ASAHIDPEDPLEHLQVEDENRSNRITGDASSVTDARPTPPVGSSDDNSPS
DSGGGGVPVAGYPYYGAPRRDRSTALRDSNEDRTGVEVESPRRRGTPAET
IGNRGSYLNRADDVEGTRTGRWRDRGRGGDSGGISAGGGVEFKRGSPEEL
AQRVKHVEAELARKLLAEEDAKSLLDIWVEKAREFVLTRTVPPTDAECDF
NWSRLRCEPKCLCGSRLRFGDYTPGRSCRLLHPWERSSDCEDAWDPSDEP
ALRRLGAATKRALGSVKRAYDARVAPATDADCTFDLETRRCQPQPACRFR
FRWGDISLSNACRLV*
back to top

mRNA from alignment at F-serratus_M_contig117:14732..19444+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig117.1384.1 ID=mRNA_F-serratus_M_contig117.1384.1|Name=mRNA_F-serratus_M_contig117.1384.1|organism=Fucus serratus male|type=mRNA|length=4713bp|location=Sequence derived from alignment at F-serratus_M_contig117:14732..19444+ (Fucus serratus male)
ATAAGATCGATGCCCAGGGTGTGTAATCTCATGCGTTCGATAGCAGGGAA GCGAAAGAGACTCTCAACTTCGGGCATAGTTCAACGATGTACTGTTTTGT TTGCGTTCCTACTGCTTTTAAATGGCACCGCAGCGCACGAGGAGCAAATA CCAGAGCCCATGACATCACCTGTAATGGTCGAAAATCATGAGACCAACCG CACTCAAGTTGATGTTGATAAACAAGGAGACTCTACTTTTCCGCCGGAGA AAGCCATGCTCGACGATTCATCGAGGGGAACAAACGTACACGACGTAGAA TCCTTGGATGGGCCAAACGACTCCGAGAGGAACGGGAAGAATGTGCCAGG AGAGGCAAATAAGCAGGACGTGGCACTATCAGCTGATTTCCCCGCAGCCG ACGCAATGGAAGCGCTGCAGCAACAGAAGGAACCACCGCTTGGTGATTAC GCAGAGACACGCGGGGACCACGCATACGCATATACCCCCTATTCCGACGC AGCGACTCATCCTGACGGTGATATTGGCGCTCCTCATCCCGAGATTGAGG CGAGCACGAGGTGTGAGGGCAAGTCTGAGGACGAGAAGGAAGCCGGCGGC AGCGTACTTGTGTCCACGGCTCGGCATGAATCGTCGGAACGAGCGAATGT ATCATCAGTAATGGAGCAAAAGGGAAACGGAAGGGGAGAGACAAATGGGA GCCAGCAGGGAGAAATGGTTGGGGGGGAGGAACAGGGACAGAGGGAAGAG GAGCGCAATGTGGGGATCGGGGGATCGGAACTCTCGCAGACGCCAGTATC ACCGTTCACGGCCGGCTTTGACCAGATCGAGCAACCGGTTTGTCTCACCG TGGCTGTTGGCGATCAGGCGATCAGCCGCGACACCGGCACCGGCGCCGGC CACGTCCTGGGATCGATTGGCGTCGATGAAGAGGATCGAGGGGCTGCCAA CACGATTAGTGGACCATCACATTTTGGAGCGCACAAGAGGTCTGGTGGTC CGCCAGATGAAACGCAGGTCCCAGGCACTATTATTAGTGTCGCAGCCAAG GAAACTACGGCCTCCGCGCACATTGATCCCGAGGACCCCTTGGAGCACCT TCAAGTTGAGGATGAAAACCGCAGCAATAGGATCACCGGTGACGCCTCGA GTGTCACAGACGCCAGACCCACTCCTCCCGTTGGTTCTTCAGACGACAAC TCCCCGAGCGATAGTGGGGGAGGAGGAGTACCAGTAGCCGGATATCCTTA CTATGGAGCTCCCAGGAGGGATCGCTCTACCGCTCTGCGTGATAGCAACG AGGACCGGACGGGAGTGGAGGTCGAGAGTCCGCGTCGAAGAGGAACGCCA GCCGAAACCATCGGTAACCGCGGAAGCTACCTGAACAGAGCGGACGATGT CGAAGGAACCAGGACTGGCCGATGGAGAGACCGAGGGAGAGGGGGAGATT CTGGAGGCATCAGCGCCGGTGGTGGGGTTGAATTCAAACGAGGATCGCCT GAAGAGCTGGCGCAACGAGTGAAACACGTGGAAGCGGAACTTGCGAGGAA GCTATTGGCCGAGGAAGACGCCAAGTCTTTGCTCGACATGTGAGGGGATC GGGTTTATGTTGATTCGTCATGCCTAGACTATACGCTCTACCTTGCTGTA TGTCATGTTCGGGTTCTAGTGTTCACTGAAAAGCTTAAAGCTTTCCTTGT TCTAGCATTCCGTCTAGCGTACCGTCATGCATATACCAAGTCCTGAAAGC TACGTCATGAGTTCCACATATTTGAGATTATACCAGAAACAGAGAGGGGC AACAACCTGCAGCAAGCATGAGCTCTGGTACTGAAGGGTGACTCTAGCTC TTAAAATGAGTTGCTCAGTTGTCCAACTGACAAACGAAGCATGCTCACGA GGAAAAACGGTCGTTGTTAACGGAGCCCCACGCGTTTGGGCCGAAAACAT ACTTCGAAGTATATATTTTGGGCACGAAATACTGATGCAACCGTCACACG ACTGTAGCTACTAGCCAGTGGGTGGGAGGCCAAATGGAGCTTTATTAAAG AAAATAGAGAGGAAACTGAAGAGCCCACTTGGGGCACCTCGGATAACGGA GCAATCACGGCGCCATGGCATCTCTGCAAGGTACATACGCGATCCTATGA CTCAAGGCTATCGGCCTGGGGGAGCTTGTAGGTCATGTGGCACGAGGAAA TCGTCTCGGAGCCCAGGACCGTTCCTCGTTGTTTCTCGCTATACGATTTG GACCACGGCCATAATCCTTCAAATACCTCCTGTGACTTATGACCCCCGGG CGAGCTCGGTGCAATTAGGCTACCCTATCGCCGCGTGTGCATTTGCGTAG CACATGGTATACACTGCAGATAAAGGTCCGAGACTAGTTGATATATCTCT TGTGGCAATATACTATATTTTCGAGAGTTGTCCTTGGTCGGCCCGAGCCA GGTCTCCCGCCATGCAGCAGTAGGAACGGCAACATGTATGGACCGCTCTT GAGCCTGATATCGTCTCCGAGACCGTAGTTTTGCTCAGCAGACTTCCTCA ACCCCAGTTGGAGCACCCTCCGAAGAGGACAGCCTTCTACGTGCTACTAA ACCGAAAAAAGTTGTCTAAATATGTGTAGTCACCTTTCTGTGGCATTTGT GGTGGGATTCCCGGGTTTACACAAAACCACCGAAAAGTTGGCCGCCGAAC CTCGGTACATGACCTTCGAAGCCCAAAACTTTCTACTGAACAAAGATACA TGACTCTGAACTCTTACATTTGGAAGATGTGGCGATGGAGACAGCAGCGG TCTCGCACCTCAAATTGCTGATACCAAAATTGTACTTTGAAGCATAAACG TCCGTATTCACGCCTTTCTTGTACCGATCAACCTATTAGATCAACCTGTT TTTTTAATGTTGTGGAGGTGTCGGAATGTTTCTGGACCGTTCCTAGCCAA TCAGGGGCGGAGCTGCCGATATTTAAATGCCCTTAATAATCATTTGACGA ACCGTAACAAGAGAAATTTCATATAAATAAGGTGTTCTATTCCTATAGGA AAAGGGGCCCCGTTAACCCTTTTCTTCCCCCCCCAAAAAAATCGTCACTG GTGACCGGTGCACCGCACGACAGACTTGAGCCTCTTTCTATCTTTGCACG ACGTTCTACTCACCACAAGCTTGACACCGTCTCACTCCCCGACGCTATAA CACTCTTCGTTCGGCACTTACGCCCTCGCCTCTTGACGCATTGATTGCGT ATTTCCATCCGCCCCGGCAGCTGGGTGGAAAAAGCCAGGGAGTTTGTCCT CACCCGCACGGTGCCCCCCACCGATGCAGAGTGCGACTTCAACTGGAGCC GGTTGCGGTGCGAGCCCAAATGCCTTTGCGGCTCGCGCCTGCGTTTTGGC GACTACACGCCCGGCCGCTCTTGCCGCCTCCTCCACCCTTGGGAACGCAG CTCCGACTGCGAGGACGCGTGGGACCCCTCGGACGAGCCGGCGCTGCGAC GCCTCGGGGCGGCAACGAAGCGGGCCCTGGGGTCGGTGAAGCGGGCGTAT GACGCGCGGGTGGCGCCGGCAACCGACGCAGATTGCACGTTCGATCTTGA GACCCGACGTTGCCAGCCGCAGCCCGCGTGTCGCTTTAGGTTTCGGGTGA GTGGCTTGGTCACAGTACGCCCTGGAACGCCGCAGCGAGGAAGTAATGGA GGGTTAGAAAAGTGAGGCCATCTGTCTCATCTGGAGATGTGTTTTTCATT TTTTATCTTTACACAACGGCGTCTTTCCCCCTCTCACTGGGGTTGCCTTA CTCGGCTCGGCTTTGCGTTGAACCACGAGAGTCCGGAATGAACCTTTTTA CACTTTTACACAGCGTACAGCATATTGTTTTGGCGCGGGAGGGGAGAGAG TAGGTAGTGCATCCAAAACCGTCCCGTGCAACAACACGCTTTCCATCTGT ACCTATTAATACCAAAGATCCACGTCTTGTGTCTTTCGTTTTCTTGTGTC TTTCGAAGGCCGCACCCTGCTGTATGTTGATTTCGAAGGAGCTAATAGAG TTAACAATACATCGAACCACCCAAAGGTTCCGCCGACTCTCTCGAGGCGT GTATCACGTTCACCTGCGCCGCCGTCCGTCTCGCCTCTGTGCTGTTTTGC CATCTATATCATCTCTGCTTCGGTTCTCGCAGTGGGGAGACATATCCCTG AGCAACGCATGCAGGCTTGTTTAAGAGGAAGCGGCGGACTTGTTGATCAT CCACGTTCTCTGGTGTGTGTGTGTTTGTGTTTGGAAACGCTGGTTTGATT TACCGAGGCAGGTCTAGTCATGGCTTGCGGCCACGGTTTTTGGAGATATT TTTACCAAGTGAGGTGCGTACGAGTCAATGATTCCCAAACGTTTGGGGTT AGAAGCGTGCTCTTGTGAGAGTTGACTGGGTTTTTTTGTCGATTGACTTG GTTCGCTGACAACTGATCGCGTGTGGTTTGTCCAGGAGGGCCAAGAGAGT ATGTGAAGCAGGCGATCTTCGGCCGCTTGTTGTTGTGGGTCTGTTTACAC AGTGTGTAGGGAAGATCTTGAGGGGAGGGGAGGCTTGGGTTTGCGCCCCG CCCTGTGGTCATTCTTGTTGAAGAGGGCGAATGTTCAATAATGTGATCAA TGTTCCCGGAAATATATATATATATTTATGTTTAAGCTCTATTTCATATT ATTAGTATACACT
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig117:14732..19444+

>mRNA_F-serratus_M_contig117.1384.1 ID=mRNA_F-serratus_M_contig117.1384.1|Name=mRNA_F-serratus_M_contig117.1384.1|organism=Fucus serratus male|type=CDS|length=3996bp|location=Sequence derived from alignment at F-serratus_M_contig117:14732..19444+ (Fucus serratus male)
ATGCCCAGGGTGTGTAATCTCATGCGTTCGATAGCAGGGAAGCGAAAGAG
ACTCTCAACTTCGGGCATAGTTCAACGATGTACTGTTTTGTTTGCGTTCC
TACTGCTTTTAAATGGCACCGCAGCGCACGAGGAGCAAATACCAGAGCCC
ATGACATCACCTGTAATGGTCGAAAATCATGAGACCAACCGCACTCAAGT
TGATGTTGATAAACAAGGAGACTCTACTTTTCCGCCGGAGAAAGCCATGC
TCGACGATTCATCGAGGGGAACAAACGTACACGACGTAGAATCCTTGGAT
GGGCCAAACGACTCCGAGAGGAACGGGAAGAATGTGCCAGGAGAGGCAAA
TAAGCAGGACGTGGCACTATCAGCTGATTTCCCCGCAGCCGACGCAATGG
AAGCGCTGCAGCAACAGAAGGAACCACCGCTTGGTGATTACGCAGAGACA
CGCGGGGACCACGCATACGCATATACCCCCTATTCCGACGCAGCGACTCA
TCCTGACGGTGATATTGGCGCTCCTCATCCCGAGATTGAGGCGAGCACGA
GGTGTGAGGGCAAGTCTGAGGACGAGAAGGAAGCCGGCGGCAGCGTACTT
GTGTCCACGGCTCGGCATGAATCGTCGGAACGAGCGAATGTATCATCAGT
AATGGAGCAAAAGGGAAACGGAAGGGGAGAGACAAATGGGAGCCAGCAGG
GAGAAATGGTTGGGGGGGAGGAACAGGGACAGAGGGAAGAGGAGCGCAAT
GTGGGGATCGGGGGATCGGAACTCTCGCAGACGCCAGTATCACCGTTCAC
GGCCGGCTTTGACCAGATCGAGCAACCGGTTTGTCTCACCGTGGCTGTTG
GCGATCAGGCGATCAGCCGCGACACCGGCACCGGCGCCGGCCACGTCCTG
GGATCGATTGGCGTCGATGAAGAGGATCGAGGGGCTGCCAACACGATTAG
TGGACCATCACATTTTGGAGCGCACAAGAGGTCTGGTGGTCCGCCAGATG
AAACGCAGGTCCCAGGCACTATTATTAGTGTCGCAGCCAAGGAAACTACG
GCCTCCGCGCACATTGATCCCGAGGACCCCTTGGAGCACCTTCAAGTTGA
GGATGAAAACCGCAGCAATAGGATCACCGGTGACGCCTCGAGTGTCACAG
ACGCCAGACCCACTCCTCCCGTTGGTTCTTCAGACGACAACTCCCCGAGC
GATAGTGGGGGAGGAGGAGTACCAGTAGCCGGATATCCTTACTATGGAGC
TCCCAGGAGGGATCGCTCTACCGCTCTGCGTGATAGCAACGAGGACCGGA
CGGGAGTGGAGGTCGAGAGTCCGCGTCGAAGAGGAACGCCAGCCGAAACC
ATCGGTAACCGCGGAAGCTACCTGAACAGAGCGGACGATGTCGAAGGAAC
CAGGACTGGCCGATGGAGAGACCGAGGGAGAGGGGGAGATTCTGGAGGCA
TCAGCGCCGGTGGTGGGGTTGAATTCAAACGAGGATCGCCTGAAGAGCTG
GCGCAACGAGTGAAACACGTGGAAGCGGAACTTGCGAGGAAGCTATTGGC
CGAGGAAGACGCCAAGTCTTTGCTCGACATATGCCCAGGGTGTGTAATCT
CATGCGTTCGATAGCAGGGAAGCGAAAGAGACTCTCAACTTCGGGCATAG
TTCAACGATGTACTGTTTTGTTTGCGTTCCTACTGCTTTTAAATGGCACC
GCAGCGCACGAGGAGCAAATACCAGAGCCCATGACATCACCTGTAATGGT
CGAAAATCATGAGACCAACCGCACTCAAGTTGATGTTGATAAACAAGGAG
ACTCTACTTTTCCGCCGGAGAAAGCCATGCTCGACGATTCATCGAGGGGA
ACAAACGTACACGACGTAGAATCCTTGGATGGGCCAAACGACTCCGAGAG
GAACGGGAAGAATGTGCCAGGAGAGGCAAATAAGCAGGACGTGGCACTAT
CAGCTGATTTCCCCGCAGCCGACGCAATGGAAGCGCTGCAGCAACAGAAG
GAACCACCGCTTGGTGATTACGCAGAGACACGCGGGGACCACGCATACGC
ATATACCCCCTATTCCGACGCAGCGACTCATCCTGACGGTGATATTGGCG
CTCCTCATCCCGAGATTGAGGCGAGCACGAGGTGTGAGGGCAAGTCTGAG
GACGAGAAGGAAGCCGGCGGCAGCGTACTTGTGTCCACGGCTCGGCATGA
ATCGTCGGAACGAGCGAATGTATCATCAGTAATGGAGCAAAAGGGAAACG
GAAGGGGAGAGACAAATGGGAGCCAGCAGGGAGAAATGGTTGGGGGGGAG
GAACAGGGACAGAGGGAAGAGGAGCGCAATGTGGGGATCGGGGGATCGGA
ACTCTCGCAGACGCCAGTATCACCGTTCACGGCCGGCTTTGACCAGATCG
AGCAACCGGTTTGTCTCACCGTGGCTGTTGGCGATCAGGCGATCAGCCGC
GACACCGGCACCGGCGCCGGCCACGTCCTGGGATCGATTGGCGTCGATGA
AGAGGATCGAGGGGCTGCCAACACGATTAGTGGACCATCACATTTTGGAG
CGCACAAGAGGTCTGGTGGTCCGCCAGATGAAACGCAGGTCCCAGGCACT
ATTATTAGTGTCGCAGCCAAGGAAACTACGGCCTCCGCGCACATTGATCC
CGAGGACCCCTTGGAGCACCTTCAAGTTGAGGATGAAAACCGCAGCAATA
GGATCACCGGTGACGCCTCGAGTGTCACAGACGCCAGACCCACTCCTCCC
GTTGGTTCTTCAGACGACAACTCCCCGAGCGATAGTGGGGGAGGAGGAGT
ACCAGTAGCCGGATATCCTTACTATGGAGCTCCCAGGAGGGATCGCTCTA
CCGCTCTGCGTGATAGCAACGAGGACCGGACGGGAGTGGAGGTCGAGAGT
CCGCGTCGAAGAGGAACGCCAGCCGAAACCATCGGTAACCGCGGAAGCTA
CCTGAACAGAGCGGACGATGTCGAAGGAACCAGGACTGGCCGATGGAGAG
ACCGAGGGAGAGGGGGAGATTCTGGAGGCATCAGCGCCGGTGGTGGGGTT
GAATTCAAACGAGGATCGCCTGAAGAGCTGGCGCAACGAGTGAAACACGT
GGAAGCGGAACTTGCGAGGAAGCTATTGGCCGAGGAAGACGCCAAGTCTT
TGCTCGACATCTGGGTGGAAAAAGCCAGGGAGTTTGTCCTCACCCGCACG
GTGCCCCCCACCGATGCAGAGTGCGACTTCAACTGGAGCCGGTTGCGGTG
CGAGCCCAAATGCCTTTGCGGCTCGCGCCTGCGTTTTGGCGACTACACGC
CCGGCCGCTCTTGCCGCCTCCTCCACCCTTGGGAACGCAGCTCCGACTGC
GAGGACGCGTGGGACCCCTCGGACGAGCCGGCGCTGCGACGCCTCGGGGC
GGCAACGAAGCGGGCCCTGGGGTCGGTGAAGCGGGCGTATGACGCGCGGG
TGGCGCCGGCAACCGACGCAGATTGCACGTTCGATCTTGAGACCCGACGT
TGCCAGCCGCAGCCCGCGTGTCGCTTTAGGTTTCGGCTGGGTGGAAAAAG
CCAGGGAGTTTGTCCTCACCCGCACGGTGCCCCCCACCGATGCAGAGTGC
GACTTCAACTGGAGCCGGTTGCGGTGCGAGCCCAAATGCCTTTGCGGCTC
GCGCCTGCGTTTTGGCGACTACACGCCCGGCCGCTCTTGCCGCCTCCTCC
ACCCTTGGGAACGCAGCTCCGACTGCGAGGACGCGTGGGACCCCTCGGAC
GAGCCGGCGCTGCGACGCCTCGGGGCGGCAACGAAGCGGGCCCTGGGGTC
GGTGAAGCGGGCGTATGACGCGCGGGTGGCGCCGGCAACCGACGCAGATT
GCACGTTCGATCTTGAGACCCGACGTTGCCAGCCGCAGCCCGCGTGTCGC
TTTAGGTTTCGGTGGGGAGACATATCCCTGAGCAACGCATGCAGGCTTGT
TTAATGGGGAGACATATCCCTGAGCAACGCATGCAGGCTTGTTTAA
back to top