mRNA_F-serratus_M_contig1169.1377.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1169.1377.1 vs. uniprot
Match: A0A6H5LCS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCS2_9PHAE) HSP 1 Score: 417 bits (1071), Expect = 2.440e-137 Identity = 216/393 (54.96%), Postives = 271/393 (68.96%), Query Frame = 1
Query: 214 VTGLLGLPIHWDEEDCDYEDSEDETYEPTPSPSSPRDAFPTRTITKNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQSRASLTALSPEVALNSIVRPYLCAASKGALQRTCNDMRQLIDKPEAWQSLDLRASVIGRRTMRSGRQSILSNQPLFFLARSVIQQSRFSRITAVDLRGLNLGAMGSAPDLLVNLFKTCSSLTKLNLWKTFVEDAALPQPDSAVEEVIADNLPGLEHLALEVDASNMGLKMLLHGCRRLKSLHIGSRCSSRMGNSVSMYPNDYGMFFFDRNGAPCLEALTFVDKINIGASGLRHVLKSSSCPRLKSLILIRCTVITDRCLKLIAPEMGRITSLTLDHCPIKPATVQMVLERLPQLSRLVVCTGNGVLENPQ 1392
V G+ G+P+ W+ EDCDY+DSEDE+Y S P T K + ++ + LS +V L+ I+RPYLC+ SK ALQRTCN MR+L+D P+AW++LDLRA +IGRRTM+SGRQSILS QPLFFLARSV+QQ RFS + VD++GLNLGAMGS PDLLV LF++C +T LNLWKT+VED LPQP +VE VIA +LPG+ HLALEVD SN GLK+LL GC RLKSLHIGSR S+R G+S+SMYPND GM F GAP LE LT VDK NIGA+GLR +L S+CPRL+ L L+R + + CLK IAP MGR+TSLTLD C + P+TVQ +L++ P+L+ +VV T +G+L+ PQ
Sbjct: 144 VPGIFGIPVAWNVEDCDYDDSEDESYTQQSGGSGPPTVGATAFAAKCTKTRGSTSVSSATRSRVVRGGR------------RRGTDWMAELSADVVLHGIIRPYLCSTSKCALQRTCNQMRRLLDSPDAWETLDLRAHIIGRRTMKSGRQSILSRQPLFFLARSVVQQPRFSLLKTVDMQGLNLGAMGSTPDLLVTLFESCRHITTLNLWKTYVEDERLPQPQFSVETVIAQHLPGVRHLALEVDDSNRGLKVLLEGCTRLKSLHIGSR-SNRAGDSISMYPNDLGMKAFTTVGAPYLETLTLVDKFNIGAAGLRCLLDPSACPRLRKLTLVRTGRVNNHCLKAIAPAMGRLTSLTLDQCLVDPSTVQFILDKCPELTSIVVSTQHGLLQQPQ 523
BLAST of mRNA_F-serratus_M_contig1169.1377.1 vs. uniprot
Match: D7FPP5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPP5_ECTSI) HSP 1 Score: 405 bits (1041), Expect = 7.120e-136 Identity = 199/306 (65.03%), Postives = 246/306 (80.39%), Query Frame = 1
Query: 475 LTALSPEVALNSIVRPYLCAASKGALQRTCNDMRQLIDKPEAWQSLDLRASVIGRRTMRSGRQSILSNQPLFFLARSVIQQSRFSRITAVDLRGLNLGAMGSAPDLLVNLFKTCSSLTKLNLWKTFVEDAALPQPDSAVEEVIADNLPGLEHLALEVDASNMGLKMLLHGCRRLKSLHIGSRCSSRMGNSVSMYPNDYGMFFFDRNGAPCLEALTFVDKINIGASGLRHVLKSSSCPRLKSLILIRCTVITDRCLKLIAPEMGRITSLTLDHCPIKPATVQMVLERLPQLSRLVVCTGNGVLENPQ 1392
+ LS EV L+ I+RPYLC+ SK ALQRTCN M +L+D P+AW++LDLRA VIGRRTM+SGRQSILS QPLFFLARSV+QQ RFS + VD++GLNLGAMGS PDLLV LF++C +T LNLWKT+VED LPQP +VE VIA +LPG+ HLALEVDASN GL++LL GC RLKSLHIGSR S++ G+S+SMYPND GM F GAP LE LT VDK+NIGA+GLR +L S+CPRL++L L+R + D CLK IAP MGR+TSLTLD CP+KP+TVQ +L++ P+L+ +VV T +G+L+ PQ
Sbjct: 1 MAELSTEVVLHGIIRPYLCSTSKCALQRTCNQMHRLLDTPDAWETLDLRAHVIGRRTMKSGRQSILSRQPLFFLARSVVQQPRFSLLKTVDMQGLNLGAMGSTPDLLVTLFESCRHITTLNLWKTYVEDERLPQPQFSVETVIAQHLPGVHHLALEVDASNRGLRVLLEGCTRLKSLHIGSR-SNQAGDSISMYPNDLGMKAFTAVGAPYLETLTLVDKVNIGAAGLRCLLNPSACPRLRTLTLVRTGRVNDHCLKAIAPAMGRLTSLTLDQCPVKPSTVQFILDKCPELTSMVVSTQHGLLQQPQ 305
BLAST of mRNA_F-serratus_M_contig1169.1377.1 vs. uniprot
Match: A0A835YZJ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZJ4_9STRA) HSP 1 Score: 115 bits (288), Expect = 4.360e-25 Identity = 78/220 (35.45%), Postives = 112/220 (50.91%), Query Frame = 1
Query: 463 SRASLTALSPEVALNSIVRPYLCAASKGALQRTCNDMRQLIDKPEAWQSLDLRASVIG-RRTMRSGRQSILSNQPLFFLARSVIQQSRFSRITAVDLRGLNLGAMGSAPDLLVNLFKTCSSLTKLNLWKTFVEDAALPQPDSAVEEVIADNLPGLEHLALEVDA-SNMGLKMLLHGCRRLKSLHIGSRCSSRMGNSVSMYPNDYGMFFFDRNGAPCLEAL 1116
S ASLT L PE L I+ P+L K L C+ R+L++ PEAW LD+ +V+G +++R+GR S L+ P + + V+QQ RFS ITA +L L LG S PDLL LF C +T L++ + + P +E +A N P L+ L + V + SN MLL C++LK L + ++ S+ APCLE L
Sbjct: 92 SHASLTGLPPETLLRHIILPHLSQLDKLRLHMACSATRRLLEAPEAWTELDVSLAVVGITKSLRTGRVSKLTPLPAYMRCKDVLQQKRFSNITAANLSRLMLGT-ASNPDLLAELFARCPKVTSLDITNATADRS--PYAYGVLERFLATNAPQLQRLRITVHSGSNATPVMLLQECKQLKRLALNVLPGQQLSIPESLASAQ----------APCLEEL 298 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1169.1377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1169.1377.1 >prot_F-serratus_M_contig1169.1377.1 ID=prot_F-serratus_M_contig1169.1377.1|Name=mRNA_F-serratus_M_contig1169.1377.1|organism=Fucus serratus male|type=polypeptide|length=468bp LQLAEASDGGSALGKGKTGALASKSNTRGKSKAIKSPKGRGASKGKSKGRback to top mRNA from alignment at F-serratus_M_contig1169:105759..116333+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1169.1377.1 ID=mRNA_F-serratus_M_contig1169.1377.1|Name=mRNA_F-serratus_M_contig1169.1377.1|organism=Fucus serratus male|type=mRNA|length=10575bp|location=Sequence derived from alignment at F-serratus_M_contig1169:105759..116333+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1169:105759..116333+ >mRNA_F-serratus_M_contig1169.1377.1 ID=mRNA_F-serratus_M_contig1169.1377.1|Name=mRNA_F-serratus_M_contig1169.1377.1|organism=Fucus serratus male|type=CDS|length=2808bp|location=Sequence derived from alignment at F-serratus_M_contig1169:105759..116333+ (Fucus serratus male)back to top |