mRNA_F-serratus_M_contig1168.1372.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1168.1372.1
Unique NamemRNA_F-serratus_M_contig1168.1372.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1168.1372.1 vs. uniprot
Match: A0A6H5JCQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ1_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 2.800e-19
Identity = 46/110 (41.82%), Postives = 66/110 (60.00%), Query Frame = 1
Query:   25 ESIETTVRTRRLLWAGALLRMGDHRLPKRVMSGELENAGKRGPGGKEKEWTDCVADDLRLFGVT-----GDWRSAALDPGAWYNTVHEGGCRFLAAWVREEENASIQRQK 339
            E+IE TVR RRL +AG ++RM D+RLPKR++ G +   G    GG+E +W  C+ +DL  F +      G W+ +A DP  WYN V +G    +  W R E  AS++RQ+
Sbjct:  140 ETIEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAM-GGGVGSRGGQESDWVSCLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDGVACLMREWHRHEAEASVKRQR 248          
BLAST of mRNA_F-serratus_M_contig1168.1372.1 vs. uniprot
Match: A0A6H5L172_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L172_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 3.370e-19
Identity = 52/121 (42.98%), Postives = 71/121 (58.68%), Query Frame = 1
Query:   25 ESIETTVRTRRLLWAGALLRMGDHRLPKRVMSGELENA-GKRGPGGKEKEWTDCVADDLRLFGVTGD------WRSAALDPGAWYNTVHEGGCRFLAAWVREEENASIQRQKKREAEERQT 366
            E+IE TVR RRL +AG ++RM D RL KR++ G +    G R  GG+E +W   + +DL  F   GD      W+ +A DP  WYN V +G   F+  W R+E  AS +RQ+ REAE  +T
Sbjct:   51 ETIEATVRKRRLWFAGFVMRMEDSRLSKRMLLGAMAGGVGYR--GGQESDWVSRLGEDLVAFFNMGDEKEGGKWKESAKDPEVWYNKVEDGAAWFMRKWHRQEAEASAKRQRAREAEAERT 169          
BLAST of mRNA_F-serratus_M_contig1168.1372.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 4.150e-19
Identity = 51/122 (41.80%), Postives = 73/122 (59.84%), Query Frame = 1
Query:   25 ESIETTVRTRRLLWAGALLRMGDHRLPKRVMSGELENA-GKRGPGGKEKEWTDCVADDLRLFGVT-----GDWRSAALDPGAWYNTVHEGGCRFLAAWVREEENASIQRQKKREAEERQTRL 372
            E+IE TVR RRL +AG ++RM D RLPKR++ G +    G R  GG+E +W   + +DL  F ++     G W+ +A DP  WYN V +G   F+  W R+E  AS +RQ+ +EAE   T +
Sbjct:  696 ETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYR--GGQESDWVSRLGEDLVAFNMSDEKEGGKWKESAKDPEVWYNKVEDGAAWFMRKWHRQEAEASAKRQRAKEAEAESTAI 815          
BLAST of mRNA_F-serratus_M_contig1168.1372.1 vs. uniprot
Match: A0A6H5K1X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1X4_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 6.910e-19
Identity = 58/137 (42.34%), Postives = 73/137 (53.28%), Query Frame = 1
Query:    7 LQRTQSESIETTVRTRRLLWAGALLRMGDHRLPKRVMSGELENAGKRGPGGKEKEWTDCVADDLRLFG----------------VTGD------WRSAALDPGA--WYNTVHEGGCRFLAAWVREEENASIQRQKKR 345
            L+R + +S+E T+R RRLL+AGAL R  D RLPKR+M GEL    KR  GG+E+ W  CV DDL+ FG                V  D      W  AA   G   W+  V +G  RF+ +W  +EE AS QR  KR
Sbjct:  207 LKRVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMLGELAGGEKRRRGGQEQNWPKCVLDDLKAFGADHGSTNTDPCCLGIPVPNDTAPKLKWTEAAKVEGEVPWHAAVLQGAERFMTSWHEKEEEASRQRALKR 343          
BLAST of mRNA_F-serratus_M_contig1168.1372.1 vs. uniprot
Match: A0A6H5JFE2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE2_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 8.640e-19
Identity = 58/137 (42.34%), Postives = 73/137 (53.28%), Query Frame = 1
Query:    7 LQRTQSESIETTVRTRRLLWAGALLRMGDHRLPKRVMSGELENAGKRGPGGKEKEWTDCVADDLRLFG----------------VTGD------WRSAALDPGA--WYNTVHEGGCRFLAAWVREEENASIQRQKKR 345
            L+R + +S+E T+R RRLL+AGAL R  D RLPKR+M GEL    KR  GG+E+ W  CV DDL+ FG                V  D      W  AA   G   W+  V +G  RF+ +W  +EE AS QR  KR
Sbjct:  313 LKRVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLKAFGADHGSTKTDPCCLGIPVPKDTTPKVKWTEAAKVEGGVPWHAAVLQGAERFMTSWHEKEEEASRQRALKR 449          
BLAST of mRNA_F-serratus_M_contig1168.1372.1 vs. uniprot
Match: A0A6H5JNV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNV8_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.150e-18
Identity = 51/122 (41.80%), Postives = 71/122 (58.20%), Query Frame = 1
Query:   25 ESIETTVRTRRLLWAGALLRMGDHRLPKRVMSGELENA-GKRGPGGKEKEWTDCVADDLRLFGVT-----GDWRSAALDPGAWYNTVHEGGCRFLAAWVREEENASIQRQKKREAEERQTRL 372
            E+IE TVR RRL +AG +LRM D RLPKR++ G +    G R  GG+E +W   + +DL  F +      G W+ +A +   WYN V +G   F+  W R+E  AS +RQ+ REAE   T +
Sbjct:   62 ETIEATVRKRRLCFAGFVLRMEDSRLPKRMLLGAMAGGVGYR--GGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKNSEVWYNKVEDGAAWFMRKWHRQEAEASAKRQRAREAEVESTAI 181          
BLAST of mRNA_F-serratus_M_contig1168.1372.1 vs. uniprot
Match: A0A6H5KS82_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS82_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.920e-18
Identity = 58/137 (42.34%), Postives = 72/137 (52.55%), Query Frame = 1
Query:    7 LQRTQSESIETTVRTRRLLWAGALLRMGDHRLPKRVMSGELENAGKRGPGGKEKEWTDCVADDLRLFGV----------------TGD------WRSAALDPGA--WYNTVHEGGCRFLAAWVREEENASIQRQKKR 345
            L+R + +S+E T+R RRLL+AGAL R  D RLPKR+M GEL    KR  GG+E+ W  CV DDL  FG                 T D      W  AA   G   W+  V +G  RF+ +W  +EE AS QR  KR
Sbjct:  535 LKRFECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELAGGEKRRRGGQEQNWPKCVLDDLNAFGADHGSTKTDPCCLGIPETKDTAPKLQWTEAAKVEGGVPWHAAVLQGAERFMTSWHEKEEEASRQRALKR 671          
BLAST of mRNA_F-serratus_M_contig1168.1372.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 3.480e-18
Identity = 51/115 (44.35%), Postives = 68/115 (59.13%), Query Frame = 1
Query:   25 ESIETTVRTRRLLWAGALLRMGDHRLPKRVMSGEL-ENAGKRGPGGKEKEWTDCVADDLRLFG-----VTGDWRSAALDPGAWYNTVHEGGCRFLAAWVREEENASIQRQKKREA 351
            E+IE TVR RRL +AG ++RM D RLPKR++ G +    G R  GG+E +W     +DL  F      V G W+ +A DP  WYN V +G   F+  W R+E  AS +RQ+ REA
Sbjct:  469 ETIEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMARGVGYR--GGQEGDWVSRPGEDLVAFNMGDEKVGGKWKESAKDPEVWYNKVEDGAAWFMRKWNRQEAEASAKRQRAREA 581          
BLAST of mRNA_F-serratus_M_contig1168.1372.1 vs. uniprot
Match: UPI001AA1A1FE (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1A1FE)

HSP 1 Score: 85.1 bits (209), Expect = 4.390e-18
Identity = 50/125 (40.00%), Postives = 67/125 (53.60%), Query Frame = 1
Query:    4 ALQRTQSESIETTVRTRRLLWAGALLRMGDHRLPKRVMSGELENAGKRGPGGKEKEWTDCVADDLRLF----GVTGD-----------WRSAALDPGAWYNTVHEGGCRFLAAWVREEENASIQR 333
            AL+ T+ ESIETT+R RRL +AGA++R  + RLP R+M G +   G   PGG+ K W   +A+DLR+F    G T D           W +AA   G WY  + E   +F+  W   E   S QR
Sbjct:   57 ALRITRCESIETTIRKRRLFFAGAVVRQHEGRLPSRLMFGTIAGGGSPKPGGQPKTWPRAIAEDLRVFKATEGSTEDSPLVFGVGTALWPTAAKQTGKWYRGILEAAEQFMGRWHEAEAKLSRQR 181          
BLAST of mRNA_F-serratus_M_contig1168.1372.1 vs. uniprot
Match: A0A6H5L2Q0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Q0_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 6.030e-18
Identity = 47/111 (42.34%), Postives = 66/111 (59.46%), Query Frame = 1
Query:   25 ESIETTVRTRRLLWAGALLRMGDHRLPKRVMSGELENA-GKRGPGGKEKEWTDCVADDLRLFGVT-----GDWRSAALDPGAWYNTVHEGGCRFLAAWVREEENASIQRQK 339
            E+IE TVR RRL +AG ++RM D RLPKR++ G +    G R  GG+E +W   + +DL  F +      G W+ +A DP  WYN V +G   F+  W R+E  AS +RQ+
Sbjct:   78 ETIEATVRKRRLCFAGFVMRMKDSRLPKRMLLGAMAGGVGYR--GGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDGAAWFMRKWHRQEAEASAKRQR 186          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1168.1372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCQ1_9PHAE2.800e-1941.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L172_9PHAE3.370e-1942.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGX2_9PHAE4.150e-1941.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1X4_9PHAE6.910e-1942.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFE2_9PHAE8.640e-1942.34Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JNV8_9PHAE1.150e-1841.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KS82_9PHAE1.920e-1842.34Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K3Q1_9PHAE3.480e-1844.35Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
UPI001AA1A1FE4.390e-1840.00hypothetical protein n=1 Tax=Vibrio parahaemolytic... [more]
A0A6H5L2Q0_9PHAE6.030e-1842.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1168contigF-serratus_M_contig1168:164281..164670 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score68.9
Seed ortholog evalue1.9e-09
Seed eggNOG ortholog28377.ENSACAP00000023453
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs3A35Z@33154,3BQYF@33208,3D7GC@33213,48EZY@7711,49BMJ@7742,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Exons1
Model size390
Cds size390
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929069.9115434-CDS-F-serratus_M_contig1168:164280..1646701622929069.9115434-CDS-F-serratus_M_contig1168:164280..164670Fucus serratus maleCDSF-serratus_M_contig1168 164281..164670 -
1690962691.5547807-CDS-F-serratus_M_contig1168:164280..1646701690962691.5547807-CDS-F-serratus_M_contig1168:164280..164670Fucus serratus maleCDSF-serratus_M_contig1168 164281..164670 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1168.1372.1prot_F-serratus_M_contig1168.1372.1Fucus serratus malepolypeptideF-serratus_M_contig1168 164281..164670 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1168.1372.1

>prot_F-serratus_M_contig1168.1372.1 ID=prot_F-serratus_M_contig1168.1372.1|Name=mRNA_F-serratus_M_contig1168.1372.1|organism=Fucus serratus male|type=polypeptide|length=130bp
DALQRTQSESIETTVRTRRLLWAGALLRMGDHRLPKRVMSGELENAGKRG
PGGKEKEWTDCVADDLRLFGVTGDWRSAALDPGAWYNTVHEGGCRFLAAW
VREEENASIQRQKKREAEERQTRLRLHLG*
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mRNA from alignment at F-serratus_M_contig1168:164281..164670-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1168.1372.1 ID=mRNA_F-serratus_M_contig1168.1372.1|Name=mRNA_F-serratus_M_contig1168.1372.1|organism=Fucus serratus male|type=mRNA|length=390bp|location=Sequence derived from alignment at F-serratus_M_contig1168:164281..164670- (Fucus serratus male)
GATGCCCTTCAGCGAACCCAATCCGAGAGTATCGAAACAACCGTACGCAC GAGGAGGTTGTTGTGGGCGGGGGCGCTACTCCGCATGGGTGACCACAGGC TACCCAAGAGGGTCATGTCGGGAGAGCTCGAGAACGCGGGGAAACGTGGA CCGGGGGGCAAGGAGAAAGAGTGGACGGACTGCGTGGCAGATGATCTTCG GCTATTTGGCGTCACGGGGGACTGGAGAAGCGCCGCACTTGACCCTGGGG CGTGGTATAACACGGTACACGAAGGGGGTTGTAGGTTTCTGGCCGCGTGG GTGAGGGAAGAAGAAAATGCGTCCATTCAACGGCAGAAGAAGAGAGAAGC GGAAGAGAGGCAGACAAGGTTGAGGTTGCATCTGGGGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1168:164281..164670-

>mRNA_F-serratus_M_contig1168.1372.1 ID=mRNA_F-serratus_M_contig1168.1372.1|Name=mRNA_F-serratus_M_contig1168.1372.1|organism=Fucus serratus male|type=CDS|length=780bp|location=Sequence derived from alignment at F-serratus_M_contig1168:164281..164670- (Fucus serratus male)
GATGCCCTTCAGCGAACCCAATCCGAGAGTATCGAAACAACCGTACGCAC
GAGGAGGTTGTTGTGGGCGGGGGCGCTACTCCGCATGGGTGACCACAGGC
TACCCAAGAGGGTCATGTCGGGAGAGCTCGAGAACGCGGGGAAACGTGGA
CCGGGGGGCAAGGAGAAAGAGTGGACGGACTGCGTGGCAGATGATCTTCG
GCTATTTGGCGTCACGGGGGACTGGAGAAGCGCCGCACTTGACCCTGGGG
CGTGGTATAACACGGTACACGAAGGGGGTTGTAGGTTTCTGGCCGCGTGG
GTGAGGGAAGAAGAAAATGCGTCCATTCAACGGCAGAAGAAGAGAGAAGC
GGAAGAGAGGCAGACAAGGTTGAGGTTGCATCTGGGGTGAGATGCCCTTC
AGCGAACCCAATCCGAGAGTATCGAAACAACCGTACGCACGAGGAGGTTG
TTGTGGGCGGGGGCGCTACTCCGCATGGGTGACCACAGGCTACCCAAGAG
GGTCATGTCGGGAGAGCTCGAGAACGCGGGGAAACGTGGACCGGGGGGCA
AGGAGAAAGAGTGGACGGACTGCGTGGCAGATGATCTTCGGCTATTTGGC
GTCACGGGGGACTGGAGAAGCGCCGCACTTGACCCTGGGGCGTGGTATAA
CACGGTACACGAAGGGGGTTGTAGGTTTCTGGCCGCGTGGGTGAGGGAAG
AAGAAAATGCGTCCATTCAACGGCAGAAGAAGAGAGAAGCGGAAGAGAGG
CAGACAAGGTTGAGGTTGCATCTGGGGTGA
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