mRNA_F-serratus_M_contig115.1256.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig115.1256.1
Unique NamemRNA_F-serratus_M_contig115.1256.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig115.1256.1 vs. uniprot
Match: D7FIU4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIU4_ECTSI)

HSP 1 Score: 179 bits (453), Expect = 4.780e-53
Identity = 80/110 (72.73%), Postives = 90/110 (81.82%), Query Frame = 1
Query:    4 GGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVDCDGMAQNDYGECRMDIINSEMGYLGYKDSESYGLTWKVRGFCTD 333
            GGDCDELRIQSTG  D++EVRGHGGS+YF +T+VTSWD   K PQ  YE GRSF+NCVSE      CDG A+ND GECRMDIINSEMGY+G+ D+ESYGLTWKVRGFC D
Sbjct:   41 GGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKKPQETYEGGRSFLNCVSEKLTGETCDGKAKNDEGECRMDIINSEMGYMGFFDAESYGLTWKVRGFCKD 150          
BLAST of mRNA_F-serratus_M_contig115.1256.1 vs. uniprot
Match: D8LRM4_ECTSI (Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM4_ECTSI)

HSP 1 Score: 181 bits (460), Expect = 1.180e-52
Identity = 83/111 (74.77%), Postives = 91/111 (81.98%), Query Frame = 1
Query:    1 LGGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVDCDGMAQNDYGECRMDIINSEMGYLGYKDSESYGLTWKVRGFCTD 333
            +GGDCDELRIQSTG TD+HEVR HGGS+YFE+TIVTSWD   K+PQ  Y  GRSF+NCVSE      C G AQN+ GECRMDIINSE+GYLGY DSESYGLTWKVRGFC D
Sbjct:  149 IGGDCDELRIQSTGPTDFHEVRAHGGSMYFESTIVTSWDTPNKTPQATYVGGRSFLNCVSEKLTGEVCVGQAQNEMGECRMDIINSEIGYLGYFDSESYGLTWKVRGFCKD 259          
BLAST of mRNA_F-serratus_M_contig115.1256.1 vs. uniprot
Match: A0A6H5KWQ2_9PHAE (MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ2_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 2.240e-51
Identity = 82/118 (69.49%), Postives = 92/118 (77.97%), Query Frame = 1
Query:    4 GGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVDCDGMAQNDYGECRMDIINSEMGYLGYKDSESYGLTWK--------VRGFCTD 333
            GGDC++LRIQSTGS D+HEVRGHGGSLYFE+TIVTSWD   K PQ  YE GRSF+NCVSE     DC+G A+N+ GECRMDIINSE+ YLGY DSESYG+TWK        VRGFC D
Sbjct:   62 GGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYEGGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKARLTRGFPVRGFCKD 179          
BLAST of mRNA_F-serratus_M_contig115.1256.1 vs. uniprot
Match: D8LC73_ECTSI (Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC73_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 2.790e-51
Identity = 82/110 (74.55%), Postives = 93/110 (84.55%), Query Frame = 1
Query:    4 GGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVDCDGMAQNDYGECRMDIINSEMGYLGYKDSESYGLTWKVRGFCTD 333
            GGDC++LRIQSTGS D+HEVRGHGGSLYFE+TIVTSWD   K PQ  YE+GRSF+NCVSE     DC+G A+N+ GECRMDIINSE+ YLGY DSESYG+TWKVRGFC D
Sbjct:  513 GGDCNQLRIQSTGSDDFHEVRGHGGSLYFEDTIVTSWDTPNKEPQETYENGRSFLNCVSEKLTGDDCEGNAKNEMGECRMDIINSEIAYLGYFDSESYGMTWKVRGFCKD 622          
BLAST of mRNA_F-serratus_M_contig115.1256.1 vs. uniprot
Match: A0A6H5JGU8_9PHAE (MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGU8_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 1.270e-50
Identity = 82/119 (68.91%), Postives = 91/119 (76.47%), Query Frame = 1
Query:    4 GGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVDCDGMAQNDYGECRMDIINSEMGYLGYKDSESYGLTWKVR---------GFCTD 333
            GGDCDELRIQSTG  D++EVRGHGGS+YF +T+VTSWD   K PQ  YE GRSF+NCVSE      CDGMA+ND GECRMDIINSEMGY+G+ DSESYGLTWKVR         GFC D
Sbjct:   86 GGDCDELRIQSTGPDDWYEVRGHGGSMYFSHTVVTSWDTPNKQPQETYEGGRSFLNCVSEKLTGETCDGMAKNDMGECRMDIINSEMGYMGFFDSESYGLTWKVRRQAGRGVVRGFCKD 204          
BLAST of mRNA_F-serratus_M_contig115.1256.1 vs. uniprot
Match: D7FZV0_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZV0_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 7.530e-47
Identity = 72/111 (64.86%), Postives = 87/111 (78.38%), Query Frame = 1
Query:    1 LGGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVDCDGMAQNDYGECRMDIINSEMGYLGYKDSESYGLTWKVRGFCTD 333
            +GG+C ELRI+ST  +D+ E+RGHGG+LYFE+TIVTSWD D + PQ  Y+ GRSFI CVSE     D    A N+ GECRMDII+SEMGYLGY  SE+YG+TWKVRGFC+D
Sbjct:    3 VGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKGGRSFIRCVSEVLTGEDT--CAINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSD 111          
BLAST of mRNA_F-serratus_M_contig115.1256.1 vs. uniprot
Match: D7FRR8_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRR8_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 3.920e-44
Identity = 73/111 (65.77%), Postives = 88/111 (79.28%), Query Frame = 1
Query:    1 LGGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVDCDGMAQNDYGECRMDIINSEMGYLGYKDSESYGLTWKVRGFCTD 333
            +GG+C ELRI+ST  +D+ E+RGHGG+LYFE+TIVTSWD D + PQ  Y+DGRSFI CVSE     D    A N+ GECRMDII+SEMGYLGY  SE+YG+TWKVRGFC+D
Sbjct:   74 VGGNCAELRIRSTSGSDFFEIRGHGGNLYFEDTIVTSWDVDGRKPQETYKDGRSFIRCVSEVLTGEDT--CAINNMGECRMDIIDSEMGYLGYDASEAYGITWKVRGFCSD 182          
BLAST of mRNA_F-serratus_M_contig115.1256.1 vs. uniprot
Match: A0A6H5JNF5_9PHAE (MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNF5_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 1.650e-37
Identity = 70/112 (62.50%), Postives = 82/112 (73.21%), Query Frame = 1
Query:    4 GGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVD--CDGMAQNDYGECRMDIINSEMGYLGYKDSESYGLTWKVRGFCTD 333
            GGD   LRIQSTGS DY+E+RGHGGSL F +T VTSWD D K   T+Y+  RSFI CVSE  A     CDG A N  GECRMDII SEMG +GY  +ESYG++WKVRG+C++
Sbjct:  466 GGDARVLRIQSTGSRDYYEIRGHGGSLSFMDTKVTSWDTDEKKVNTNYKKERSFIRCVSEELADKPDTCDGHAVNHMGECRMDIIRSEMGEMGYDAAESYGISWKVRGYCSE 577          
BLAST of mRNA_F-serratus_M_contig115.1256.1 vs. uniprot
Match: A0A6H5JU98_9PHAE (MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU98_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.050e-35
Identity = 68/112 (60.71%), Postives = 78/112 (69.64%), Query Frame = 1
Query:    4 GGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVD--CDGMAQNDYGECRMDIINSEMGYLGYKDSESYGLTWKVRGFCTD 333
            GGD DELR+ ST  T Y  +R HGGSL F  T V SWD  T SP  D  DGRS+I+ +SE     D  C+G A+N  GE RMDI NSE+GYLG++DSESYGLTWKVRGFC D
Sbjct:  128 GGDADELRLLSTTDT-YINLRAHGGSLDFVGTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIENSEIGYLGFQDSESYGLTWKVRGFCKD 238          
BLAST of mRNA_F-serratus_M_contig115.1256.1 vs. uniprot
Match: A0A6H5KES9_9PHAE (MEP22b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KES9_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 1.640e-35
Identity = 67/112 (59.82%), Postives = 78/112 (69.64%), Query Frame = 1
Query:    4 GGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYEDGRSFINCVSEYNATVD--CDGMAQNDYGECRMDIINSEMGYLGYKDSESYGLTWKVRGFCTD 333
            GGD DELR+ ST  T +  +R HGGSL F +T V SWD  T SP  D  DGRS+I+ +SE     D  C+G A+N  GE RMDI +SE+GYLGY DSESYGLTWKVRGFC D
Sbjct:   19 GGDADELRLLSTSET-FINLRAHGGSLDFVSTKVFSWDTSTNSPDEDETDGRSYISAISEIITDEDETCEGNAKNTMGEARMDIESSEIGYLGYWDSESYGLTWKVRGFCED 129          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig115.1256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIU4_ECTSI4.780e-5372.73Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D8LRM4_ECTSI1.180e-5274.77Mannuronan C-5-epimerase N-terminal n=1 Tax=Ectoca... [more]
A0A6H5KWQ2_9PHAE2.240e-5169.49MEP2 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LC73_ECTSI2.790e-5174.55Mannuronan C-5-epimerase 4 n=1 Tax=Ectocarpus sili... [more]
A0A6H5JGU8_9PHAE1.270e-5068.91MEP1 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FZV0_ECTSI7.530e-4764.86Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7FRR8_ECTSI3.920e-4465.77Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5JNF5_9PHAE1.650e-3762.50MEP13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5JU98_9PHAE1.050e-3560.71MEP5a protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5KES9_9PHAE1.640e-3559.82MEP22b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig115contigF-serratus_M_contig115:83597..83929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score185.3
Seed ortholog evalue1.6e-44
Seed eggNOG ortholog2880.D8LC73
KEGG koko:K11244
KEGG Pathwayko04011,ko04139,map04011,map04139
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929048.6247704-CDS-F-serratus_M_contig115:83596..839291622929048.6247704-CDS-F-serratus_M_contig115:83596..83929Fucus serratus maleCDSF-serratus_M_contig115 83597..83929 -
1690962681.7328815-CDS-F-serratus_M_contig115:83596..839291690962681.7328815-CDS-F-serratus_M_contig115:83596..83929Fucus serratus maleCDSF-serratus_M_contig115 83597..83929 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig115.1256.1prot_F-serratus_M_contig115.1256.1Fucus serratus malepolypeptideF-serratus_M_contig115 83597..83929 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig115.1256.1

>prot_F-serratus_M_contig115.1256.1 ID=prot_F-serratus_M_contig115.1256.1|Name=mRNA_F-serratus_M_contig115.1256.1|organism=Fucus serratus male|type=polypeptide|length=111bp
LGGDCDELRIQSTGSTDYHEVRGHGGSLYFENTIVTSWDPDTKSPQTDYE
DGRSFINCVSEYNATVDCDGMAQNDYGECRMDIINSEMGYLGYKDSESYG
LTWKVRGFCTD
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mRNA from alignment at F-serratus_M_contig115:83597..83929-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig115.1256.1 ID=mRNA_F-serratus_M_contig115.1256.1|Name=mRNA_F-serratus_M_contig115.1256.1|organism=Fucus serratus male|type=mRNA|length=333bp|location=Sequence derived from alignment at F-serratus_M_contig115:83597..83929- (Fucus serratus male)
CTTGGGGGTGACTGCGACGAGCTTCGCATCCAGTCGACGGGATCCACAGA CTACCACGAGGTTAGGGGTCACGGAGGAAGCCTGTACTTCGAAAACACCA TCGTGACTTCGTGGGACCCAGACACAAAGTCTCCGCAGACGGATTATGAG GACGGGCGCTCGTTCATTAACTGTGTCTCCGAGTACAATGCCACAGTGGA CTGTGATGGTATGGCCCAGAACGACTACGGGGAATGCCGCATGGACATCA TCAACTCTGAGATGGGGTACCTGGGCTACAAGGACTCGGAGTCGTATGGG TTAACCTGGAAAGTCCGCGGTTTCTGCACCGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig115:83597..83929-

>mRNA_F-serratus_M_contig115.1256.1 ID=mRNA_F-serratus_M_contig115.1256.1|Name=mRNA_F-serratus_M_contig115.1256.1|organism=Fucus serratus male|type=CDS|length=666bp|location=Sequence derived from alignment at F-serratus_M_contig115:83597..83929- (Fucus serratus male)
CTTGGGGGTGACTGCGACGAGCTTCGCATCCAGTCGACGGGATCCACAGA
CTACCACGAGGTTAGGGGTCACGGAGGAAGCCTGTACTTCGAAAACACCA
TCGTGACTTCGTGGGACCCAGACACAAAGTCTCCGCAGACGGATTATGAG
GACGGGCGCTCGTTCATTAACTGTGTCTCCGAGTACAATGCCACAGTGGA
CTGTGATGGTATGGCCCAGAACGACTACGGGGAATGCCGCATGGACATCA
TCAACTCTGAGATGGGGTACCTGGGCTACAAGGACTCGGAGTCGTATGGG
TTAACCTGGAAAGTCCGCGGTTTCTGCACCGACCTTGGGGGTGACTGCGA
CGAGCTTCGCATCCAGTCGACGGGATCCACAGACTACCACGAGGTTAGGG
GTCACGGAGGAAGCCTGTACTTCGAAAACACCATCGTGACTTCGTGGGAC
CCAGACACAAAGTCTCCGCAGACGGATTATGAGGACGGGCGCTCGTTCAT
TAACTGTGTCTCCGAGTACAATGCCACAGTGGACTGTGATGGTATGGCCC
AGAACGACTACGGGGAATGCCGCATGGACATCATCAACTCTGAGATGGGG
TACCTGGGCTACAAGGACTCGGAGTCGTATGGGTTAACCTGGAAAGTCCG
CGGTTTCTGCACCGAC
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