mRNA_F-serratus_M_contig1146.1250.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1146.1250.1
Unique NamemRNA_F-serratus_M_contig1146.1250.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1146.1250.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1146contigF-serratus_M_contig1146:286673..287359 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size688
Cds size402
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929047.636023-CDS-F-serratus_M_contig1146:286672..2870741622929047.636023-CDS-F-serratus_M_contig1146:286672..287074Fucus serratus maleCDSF-serratus_M_contig1146 286673..287074 +
1690962681.321345-CDS-F-serratus_M_contig1146:286672..2870741690962681.321345-CDS-F-serratus_M_contig1146:286672..287074Fucus serratus maleCDSF-serratus_M_contig1146 286673..287074 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929047.6497114-UTR-F-serratus_M_contig1146:287074..2873591622929047.6497114-UTR-F-serratus_M_contig1146:287074..287359Fucus serratus maleUTRF-serratus_M_contig1146 287075..287359 +
1690962681.3410347-UTR-F-serratus_M_contig1146:287074..2873591690962681.3410347-UTR-F-serratus_M_contig1146:287074..287359Fucus serratus maleUTRF-serratus_M_contig1146 287075..287359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1146.1250.1prot_F-serratus_M_contig1146.1250.1Fucus serratus malepolypeptideF-serratus_M_contig1146 286673..287074 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1146.1250.1

>prot_F-serratus_M_contig1146.1250.1 ID=prot_F-serratus_M_contig1146.1250.1|Name=mRNA_F-serratus_M_contig1146.1250.1|organism=Fucus serratus male|type=polypeptide|length=134bp
INLSFPTTESGKSTSTFKTLRSRYSPVIAIGLAPLTSDSKEPGSRGTSNL
PSSNPSPRRKQLGNGRQSGDGAAYRRAFGLRTDFDEVSTTCTVLPSDGTV
QVNRATRRYGRACGTCSYVVCCNTNQLPLSKLI*
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mRNA from alignment at F-serratus_M_contig1146:286673..287359+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1146.1250.1 ID=mRNA_F-serratus_M_contig1146.1250.1|Name=mRNA_F-serratus_M_contig1146.1250.1|organism=Fucus serratus male|type=mRNA|length=687bp|location=Sequence derived from alignment at F-serratus_M_contig1146:286673..287359+ (Fucus serratus male)
ATCAACCTTAGCTTTCCCACAACAGAGAGTGGAAAAAGCACGAGCACGTT
TAAAACGCTCCGCTCACGGTACTCGCCCGTGATCGCCATCGGCCTCGCAC
CGCTTACAAGCGATTCCAAGGAGCCCGGATCTAGGGGAACCTCAAATTTG
CCATCCTCCAATCCGTCCCCTAGGAGAAAACAGCTCGGGAATGGGCGACA
AAGCGGGGACGGCGCTGCTTACCGCCGTGCGTTCGGGCTTCGGACGGACT
TCGACGAAGTCTCCACAACATGTACAGTTCTGCCATCAGACGGTACTGTG
CAAGTCAATCGCGCCACCAGACGGTACGGTAGAGCTTGCGGAACTTGTTC
TTACGTAGTATGTTGTAATACAAACCAACTTCCCCTTTCAAAATTGATCT
AGTCAGTACCTGCATGGGTTTGTTTGTGACTCAGCCTCCGAGTATTTTTT
GCAGCAATGGGCACTACTTCCCTTTTGGGGTTTTCCTGTCCTACCCTGCT
TCCTGTTTTTCTGAATTTGCTACTTTACAACAAATATCGAGATGCACAAC
GCACATGCAAGAAGGCTCCAATCTATATAGAAACATGGCGCGTGAATTAA
ACCTCGCGCGCGGAGCGCGCCATTTTCGCGAGGATACGTTCTTGCTCCCG
GGACCCTATCAATGACGTAACCTTAGTTCGATTCCCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1146:286673..287359+

>mRNA_F-serratus_M_contig1146.1250.1 ID=mRNA_F-serratus_M_contig1146.1250.1|Name=mRNA_F-serratus_M_contig1146.1250.1|organism=Fucus serratus male|type=CDS|length=804bp|location=Sequence derived from alignment at F-serratus_M_contig1146:286673..287359+ (Fucus serratus male)
ATCAACCTTAGCTTTCCCACAACAGAGAGTGGAAAAAGCACGAGCACGTT
TAAAACGCTCCGCTCACGGTACTCGCCCGTGATCGCCATCGGCCTCGCAC
CGCTTACAAGCGATTCCAAGGAGCCCGGATCTAGGGGAACCTCAAATTTG
CCATCCTCCAATCCGTCCCCTAGGAGAAAACAGCTCGGGAATGGGCGACA
AAGCGGGGACGGCGCTGCTTACCGCCGTGCGTTCGGGCTTCGGACGGACT
TCGACGAAGTCTCCACAACATGTACAGTTCTGCCATCAGACGGTACTGTG
CAAGTCAATCGCGCCACCAGACGGTACGGTAGAGCTTGCGGAACTTGTTC
TTACGTAGTATGTTGTAATACAAACCAACTTCCCCTTTCAAAATTGATCT
AGATCAACCTTAGCTTTCCCACAACAGAGAGTGGAAAAAGCACGAGCACG
TTTAAAACGCTCCGCTCACGGTACTCGCCCGTGATCGCCATCGGCCTCGC
ACCGCTTACAAGCGATTCCAAGGAGCCCGGATCTAGGGGAACCTCAAATT
TGCCATCCTCCAATCCGTCCCCTAGGAGAAAACAGCTCGGGAATGGGCGA
CAAAGCGGGGACGGCGCTGCTTACCGCCGTGCGTTCGGGCTTCGGACGGA
CTTCGACGAAGTCTCCACAACATGTACAGTTCTGCCATCAGACGGTACTG
TGCAAGTCAATCGCGCCACCAGACGGTACGGTAGAGCTTGCGGAACTTGT
TCTTACGTAGTATGTTGTAATACAAACCAACTTCCCCTTTCAAAATTGAT
CTAG
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