mRNA_F-serratus_M_contig1126.1142.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1126.1142.1 vs. uniprot
Match: D7FIW5_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIW5_ECTSI) HSP 1 Score: 148 bits (374), Expect = 1.110e-33 Identity = 145/345 (42.03%), Postives = 169/345 (48.99%), Query Frame = 3
Query: 1239 AMDDDGKLPDQVVGMAEGAKITDAEKASIARTVERKRRSLAVAAVSAAVAASDAGDAVYPSLR------------RCHPLSPTMHVLGATANTTD---SQQWVYLGDDQEGADTGEEDEDEADVEHDDGRAERGRLPVAEGLNACSPRGSRMIVGTDVADGFGRSLGGSSEPDFLGVGARGGGAGAVSXXXXXXXXXXXXXXX-------------------------RRSSREEQV--SRRCSSDD------CAAEVSRLKIELDRTRKCVACLNRDRDTLLFPCKHLVLCGPCYGRVVRRAEDQA-DADEAEGEGG--GQSRNGRCPTCRADICGHLSGVIIN 2120
A+D+DGKLP+QVVGMAEG+ IT AEK +IA V +RR ++ V AG A P R R PL +M + TA T S + Y EE + + +G DG G S SSE G+ XXXXXXXXXXXXXXX +RSSREEQ+ SRR +S AAE+SRL+IELDR RKCVACL+RDRDTLLFPCKHLVLC CY RVVR+AED A D A G GG G GRCPTCRADICGHLSG++IN
Sbjct: 364 ALDEDGKLPEQVVGMAEGSNITTAEKEAIAEAVMERRRLMSPGGVG-----ESAGSASLPHARQSGXXXXXXXXERLLPLPRSMAMARGTAPVTSDLMSGHFAY-----------EEATEXXXXXXXXXXXXXXXXXXXXXXGGLAMQGVVHARRLQPRDGMGPS---SSEDGGRGMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAXXXXXXXXHQRSSREEQMASSRRPASSPSHDHSLAAAELSRLRIELDRARKCVACLSRDRDTLLFPCKHLVLCSQCYTRVVRQAEDDAVGVDAAAGIGGPPGVLGTGRCPTCRADICGHLSGIVIN 689
BLAST of mRNA_F-serratus_M_contig1126.1142.1 vs. uniprot
Match: A0A6H5K0E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0E0_9PHAE) HSP 1 Score: 58.2 bits (139), Expect = 3.090e-7 Identity = 27/41 (65.85%), Postives = 31/41 (75.61%), Query Frame = 3
Query: 75 LDAAKRGDQHFLRLYLDQFEADVNLRDDETQGTLLHWACSY 197
+DAAK GDQH LR YLD+ DVNLRDD TQGTLLH ++
Sbjct: 11 IDAAKAGDQHRLRSYLDERNGDVNLRDDSTQGTLLHTPTTF 51
BLAST of mRNA_F-serratus_M_contig1126.1142.1 vs. uniprot
Match: A0A383VPS7_TETOB (RING-type E3 ubiquitin transferase n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VPS7_TETOB) HSP 1 Score: 64.7 bits (156), Expect = 5.190e-7 Identity = 29/78 (37.18%), Postives = 43/78 (55.13%), Query Frame = 3
Query: 1884 ELDRTRKCVACLNRDRDTLLFPCKHLVLCGPCYGRVVRRAEDQADADEAEGEGGGQSRNGRCPTCRADICGHLSGVII 2117
+L + CV CL+ RDTLL PCKHLVLC C + + A+ Q + + G R+ CP CR + ++G+I+
Sbjct: 713 QLHQATHCVVCLDAPRDTLLLPCKHLVLCQGCSCHLQQLAQRQGGSSSSSG------RSAVCPVCRVPVASQVAGIIL 784
BLAST of mRNA_F-serratus_M_contig1126.1142.1 vs. uniprot
Match: A0A8J4AJ84_9CHLO (RING-type domain-containing protein n=3 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AJ84_9CHLO) HSP 1 Score: 57.0 bits (136), Expect = 9.790e-5 Identity = 28/89 (31.46%), Postives = 43/89 (48.31%), Query Frame = 3
Query: 1842 SSDDCAAEVSRLKI-ELDRTRKCVACLNRDRDTLLFPCKHLVLCGPCYGRVVRRAEDQADADEAEGEGGGQSRNGRCPTCRADICGHLS 2105
S+ D ++ R + ELD C+AC+ + TLL PC H+V+CGPC +V+ R+ G CP CR + H++
Sbjct: 434 SNGDSIPDILRADVNELDDEHACIACMAALKTTLLIPCGHMVMCGPCAAQVLERS-------------------GVCPMCREQVISHVT 503 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1126.1142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1126.1142.1 >prot_F-serratus_M_contig1126.1142.1 ID=prot_F-serratus_M_contig1126.1142.1|Name=mRNA_F-serratus_M_contig1126.1142.1|organism=Fucus serratus male|type=polypeptide|length=697bp MAAAAPVMDYEAKALDAAKRGDQHFLRLYLDQFEADVNLRDDETQGTLLHback to top mRNA from alignment at F-serratus_M_contig1126:142008..165243- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1126.1142.1 ID=mRNA_F-serratus_M_contig1126.1142.1|Name=mRNA_F-serratus_M_contig1126.1142.1|organism=Fucus serratus male|type=mRNA|length=23236bp|location=Sequence derived from alignment at F-serratus_M_contig1126:142008..165243- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1126:142008..165243- >mRNA_F-serratus_M_contig1126.1142.1 ID=mRNA_F-serratus_M_contig1126.1142.1|Name=mRNA_F-serratus_M_contig1126.1142.1|organism=Fucus serratus male|type=CDS|length=4182bp|location=Sequence derived from alignment at F-serratus_M_contig1126:142008..165243- (Fucus serratus male)back to top |