mRNA_F-serratus_M_contig1125.1137.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1125.1137.1
Unique NamemRNA_F-serratus_M_contig1125.1137.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1125.1137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1125contigF-serratus_M_contig1125:133078..133495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size195
Cds size114
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1125.1137.1prot_F-serratus_M_contig1125.1137.1Fucus serratus malepolypeptideF-serratus_M_contig1125 133132..133468 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929021.7086267-UTR-F-serratus_M_contig1125:133077..1331311622929021.7086267-UTR-F-serratus_M_contig1125:133077..133131Fucus serratus maleUTRF-serratus_M_contig1125 133078..133131 +
1690962669.9877856-UTR-F-serratus_M_contig1125:133077..1331311690962669.9877856-UTR-F-serratus_M_contig1125:133077..133131Fucus serratus maleUTRF-serratus_M_contig1125 133078..133131 +
1622929021.7533937-UTR-F-serratus_M_contig1125:133468..1334951622929021.7533937-UTR-F-serratus_M_contig1125:133468..133495Fucus serratus maleUTRF-serratus_M_contig1125 133469..133495 +
1690962670.0285585-UTR-F-serratus_M_contig1125:133468..1334951690962670.0285585-UTR-F-serratus_M_contig1125:133468..133495Fucus serratus maleUTRF-serratus_M_contig1125 133469..133495 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929021.7242556-CDS-F-serratus_M_contig1125:133131..1331621622929021.7242556-CDS-F-serratus_M_contig1125:133131..133162Fucus serratus maleCDSF-serratus_M_contig1125 133132..133162 +
1690962670.0076663-CDS-F-serratus_M_contig1125:133131..1331621690962670.0076663-CDS-F-serratus_M_contig1125:133131..133162Fucus serratus maleCDSF-serratus_M_contig1125 133132..133162 +
1622929021.7397642-CDS-F-serratus_M_contig1125:133385..1334681622929021.7397642-CDS-F-serratus_M_contig1125:133385..133468Fucus serratus maleCDSF-serratus_M_contig1125 133386..133468 +
1690962670.0189927-CDS-F-serratus_M_contig1125:133385..1334681690962670.0189927-CDS-F-serratus_M_contig1125:133385..133468Fucus serratus maleCDSF-serratus_M_contig1125 133386..133468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1125.1137.1

>prot_F-serratus_M_contig1125.1137.1 ID=prot_F-serratus_M_contig1125.1137.1|Name=mRNA_F-serratus_M_contig1125.1137.1|organism=Fucus serratus male|type=polypeptide|length=38bp
MRLAQYLPSASGALAQVIKFLLLPTGNTSPYNLLNCS*
back to top

mRNA from alignment at F-serratus_M_contig1125:133078..133495+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1125.1137.1 ID=mRNA_F-serratus_M_contig1125.1137.1|Name=mRNA_F-serratus_M_contig1125.1137.1|organism=Fucus serratus male|type=mRNA|length=418bp|location=Sequence derived from alignment at F-serratus_M_contig1125:133078..133495+ (Fucus serratus male)
ACGTCATTAGACTATGGGCGCAATTATCCTATAATAGGCAACCGCCGTAT
ACGAATGCGCCTGGCGCAATATCTCCCAAGCGCGAGTGTAGTGTTGACGA
AGTAAGGATTTACTAATCACCTTGCCTACACGAACACCCTCCCCGATTCG
AAACATCCTTACTGATGAGTTAATCAGGGGCACTAAAAAGACAACAACAA
CGAAGGGAAACCCAGCTACTGGATAAAAACCCTCCGTTCCTTCCTAAGTC
CTTTAGGGTACCAGGTAGGCCAACGTCTACTGGTGTGGCAGACGCTCAAT
CTCGATAGGTGGAGCGCTTGCTCAGGTCATAAAATTTTTGCTACTCCCTA
CAGGTAACACCTCTCCCTACAACTTGCTTAATTGCAGTTAGCATCTGGGG
TGGACCAACGACCCGCGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1125:133078..133495+

>mRNA_F-serratus_M_contig1125.1137.1 ID=mRNA_F-serratus_M_contig1125.1137.1|Name=mRNA_F-serratus_M_contig1125.1137.1|organism=Fucus serratus male|type=CDS|length=228bp|location=Sequence derived from alignment at F-serratus_M_contig1125:133078..133495+ (Fucus serratus male)
ATGCGCCTGGCGCAATATCTCCCAAGCGCGAATGCGCCTGGCGCAATATC
TCCCAAGCGCGAGTGGAGCGCTTGCTCAGGTCATAAAATTTTTGCTACTC
CCTACAGGTAACACCTCTCCCTACAACTTGCTTAATTGCAGTTAGGTGGA
GCGCTTGCTCAGGTCATAAAATTTTTGCTACTCCCTACAGGTAACACCTC
TCCCTACAACTTGCTTAATTGCAGTTAG
back to top