mRNA_F-serratus_M_contig1122.1130.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig1122.1130.1
Unique Name	mRNA_F-serratus_M_contig1122.1130.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig1122.1130.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig1122.1130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig1122	contig	F-serratus_M_contig1122:185859..189123 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Hypothetical protein
Ec32 ortholog	Ec-12_000680.1
Exons	4
Model size	2419
Cds size	987
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig1122.1130.1	prot_F-serratus_M_contig1122.1130.1	Fucus serratus male	polypeptide	F-serratus_M_contig1122 185993..187825 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929019.992114-UTR-F-serratus_M_contig1122:185858..185992	1622929019.992114-UTR-F-serratus_M_contig1122:185858..185992	Fucus serratus male	UTR	F-serratus_M_contig1122 185859..185992 +
1690962669.0816665-UTR-F-serratus_M_contig1122:185858..185992	1690962669.0816665-UTR-F-serratus_M_contig1122:185858..185992	Fucus serratus male	UTR	F-serratus_M_contig1122 185859..185992 +
1622929020.0675325-UTR-F-serratus_M_contig1122:187825..189123	1622929020.0675325-UTR-F-serratus_M_contig1122:187825..189123	Fucus serratus male	UTR	F-serratus_M_contig1122 187826..189123 +
1690962669.124936-UTR-F-serratus_M_contig1122:187825..189123	1690962669.124936-UTR-F-serratus_M_contig1122:187825..189123	Fucus serratus male	UTR	F-serratus_M_contig1122 187826..189123 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929020.0083246-CDS-F-serratus_M_contig1122:185992..186243	1622929020.0083246-CDS-F-serratus_M_contig1122:185992..186243	Fucus serratus male	CDS	F-serratus_M_contig1122 185993..186243 +
1690962669.0906408-CDS-F-serratus_M_contig1122:185992..186243	1690962669.0906408-CDS-F-serratus_M_contig1122:185992..186243	Fucus serratus male	CDS	F-serratus_M_contig1122 185993..186243 +
1622929020.023371-CDS-F-serratus_M_contig1122:186734..186821	1622929020.023371-CDS-F-serratus_M_contig1122:186734..186821	Fucus serratus male	CDS	F-serratus_M_contig1122 186735..186821 +
1690962669.0978456-CDS-F-serratus_M_contig1122:186734..186821	1690962669.0978456-CDS-F-serratus_M_contig1122:186734..186821	Fucus serratus male	CDS	F-serratus_M_contig1122 186735..186821 +
1622929020.0418363-CDS-F-serratus_M_contig1122:187001..187068	1622929020.0418363-CDS-F-serratus_M_contig1122:187001..187068	Fucus serratus male	CDS	F-serratus_M_contig1122 187002..187068 +
1690962669.1058393-CDS-F-serratus_M_contig1122:187001..187068	1690962669.1058393-CDS-F-serratus_M_contig1122:187001..187068	Fucus serratus male	CDS	F-serratus_M_contig1122 187002..187068 +
1622929020.0542877-CDS-F-serratus_M_contig1122:187243..187825	1622929020.0542877-CDS-F-serratus_M_contig1122:187243..187825	Fucus serratus male	CDS	F-serratus_M_contig1122 187244..187825 +
1690962669.1143131-CDS-F-serratus_M_contig1122:187243..187825	1690962669.1143131-CDS-F-serratus_M_contig1122:187243..187825	Fucus serratus male	CDS	F-serratus_M_contig1122 187244..187825 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig1122:185859..189123+
coding sequence from alignment at F-serratus_M_contig1122:185859..189123+

protein sequence of mRNA_F-serratus_M_contig1122.1130.1

>prot_F-serratus_M_contig1122.1130.1 ID=prot_F-serratus_M_contig1122.1130.1|Name=mRNA_F-serratus_M_contig1122.1130.1|organism=Fucus serratus male|type=polypeptide|length=329bp
MLSSKKGNLLCFQWEIERFQRIHREKIANATAQTKVKRASPRSRRDRLHK
SAKDKQVEADVKLHNAFLLEKMAHVHQLGGCQQRAQHEFQNIKAPLPFGR
ANKNVARAVHEGRFTARRKEHERVRRANATMIIRLASPIRSEIDFNKFEI
DFVKSRVHLRMAQCNHTIGHTSILDAVSTRTPHSEADVSYSGKPQCQIPK
EALTGDARPPGRPTKMQGHKGRPGFSRQLKSRQRPFSAGFVPRRPHDDTG
KNRSTGHIIKAWINQSLYDKAPSDSVEDQISMPSGPERGTKLHRHLPAHR
PHTALGLRRGKDHNDFFYTRAADPGWGG*

mRNA from alignment at F-serratus_M_contig1122:185859..189123+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig1122.1130.1 ID=mRNA_F-serratus_M_contig1122.1130.1|Name=mRNA_F-serratus_M_contig1122.1130.1|organism=Fucus serratus male|type=mRNA|length=3265bp|location=Sequence derived from alignment at F-serratus_M_contig1122:185859..189123+ (Fucus serratus male)
GAAGGTTTAGGTGCCGTTCACATTTTTCTTTAAACTACGAACAGAGAAAA
AAATATCCCGCTTTCTTTACAGGCCCGCATTGCGCGCGTGGCGATTCAAT
ATAACGGGATAAGGATAATCAAAAGACTCACAGCATGCTCAGCTCGAAAA
AAGGTAACCTATTGTGCTTCCAGTGGGAGATCGAGCGGTTCCAGCGAATC
CATAGAGAGAAAATAGCGAACGCGACCGCGCAGACCAAAGTGAAACGAGC
CTCACCCCGATCCAGGAGAGACCGCCTGCACAAGTCTGCAAAGGATAAGC
AGGTTGAAGCCGATGTCAAGCTTCATAATGCCTTCCTCTTGGAAAAAATG
GCTCACGTTCACCAACTTGGCGGCTGCCAGCAGAGGTAAATGTTTAAAGA
AAATCTGAACGCGTCGAAACCTTCGATGAATCTGCCGTGTCCCTGATCGT
CCTCCCGGGAAGCAAGGATACTATTAATAGTGGCAGAAAAAGCTCTAGGC
GGGACCAAAAATAAAAATTTCAGCCCCTTTTTGGAGGTAAAGGGCGAAAA
TTGCGTGGCGGATCTGTCCTTTACTTAATGATACTTCTTTATCTTCTCAC
TTCCGAGTAGCGTGTGAGCTCAGAGCGACAGCATTTATTTGCAGATCTTT
GAAGGAAAAATTACACGGCGTAGATACCTAAGTGTCGTAAGAACTACGTG
AAAACTTATAAATTCAATACGTAACTTTTTTGCATCACACATAGACAGGT
ACACGATCGAACCACGACGGCACCCAATTTTAGATATCATTACTTTTCGA
CCCGCCGCTTACTTACATGTTAGCGCTACTTTTTATTGGTTAAATGACGA
ACAACGTGGCGGCGTAACCTGTGCAGGGCTCAACATGAGTTCCAAAACAT
CAAAGCGCCTTTACCCTTTGGGAGAGCTAACAAAAACGTGGCTCGAGCAG
TGCACGAAGGCAGGCAAGGGCGACGGCAGAAAAATACCACACAGTGTTTC
TTGAAGTGTGTGCTCGAAAGTCCCCACCCGCATTCGCCAGTCGCAGTGAT
TTCGTCTGAAGAGTTTTCGATACTTTGTAGAGTTTCTAATGAATTGTGGC
AAAACGGGGACTAATCTGAGTCCATTGTTCCCCGGCACGTCAGGTTCACC
GCAAGGAGGAAAGAACACGAGCGTGTTCGAAGAGCGAATGCGACGATGAT
CATACGCCTGGTAAGTATCTATTATAGCGCCGAGCGATTTGTCAAGTCGT
GGCGGATGAAAACACATGTATGTATTGGCAAGACGCACAAACCCGCAAGC
ATGGTTGCAAAAAACATGGATGCAAAAAACTTTGAGCGCATGCTTCAATT
GCACTCTCCTACAACAATATTGCCGGTGGTGCTAGGCAAGCCCTATCAGG
AGCGAAATCGATTTCAACAAATTCGAGATCGACTTCGTCAAGAGCCGTGT
CCATCTCCGCATGGCTCAATGCAACCACACCATAGGACACACATCCATAT
TGGACGCTGTATCGACTCGGACTCCGCATTCCGAAGCGGATGTCTCTTAC
AGCGGAAAGCCACAGTGCCAAATACCTAAAGAAGCATTGACAGGCGACGC
GCGCCCACCAGGACGTCCTACAAAAATGCAGGGGCACAAAGGGCGACCAG
GGTTTTCACGGCAGTTAAAATCGAGGCAACGACCTTTCTCCGCGGGGTTT
GTCCCACGTCGTCCACATGATGACACGGGTAAAAATCGAAGCACTGGCCA
CATAATAAAAGCCTGGATCAACCAATCCCTTTACGACAAGGCTCCAAGCG
ATAGCGTTGAAGATCAAATATCAATGCCTAGTGGACCTGAAAGGGGAACC
AAGCTTCATCGTCACCTGCCAGCACATCGGCCTCACACCGCCCTGGGATT
GCGTCGGGGCAAAGACCATAACGACTTTTTTTATACGCGCGCCGCCGATC
CAGGATGGGGGGGATAATTCCATAAAGATCCCCCGACCTCCATCTGCGCC
GGAGAGGGTCGAACGGGGTAACTGGCGAAAGCACGACCCAGAATGTTCGA
GAGGGCTCGCCCGCAGATATGCTGCCGTTGAAAGCTACGGGATGGATTGC
GAGCGAGAAAGGTTCGCGGGAGGTTCAAAAGTAGAGCAAGACTTGCACGA
CATCTCTACGGGCATACTAAACCAGGGAGGGGATCTCTGGTATCTTGGGC
GAACGTTGCTTGCGGAGGCAAAGGTGATAGTTAACGGTAGTTCAAAGAGG
AAAAATCAAGATCGAAGAGAGGTAATCCTTCGATGCCGAAGTCTAGACGG
TCTTGTCAGACAGCAGGGACAGGTACGAAAGACCCTTCGAGGCTTTGTTG
TCGAGGCTTCCCTAAAACCTTGCCGGAAATCGTCATGGCCATGTATCGTA
GAAGGACAAGATACGAAGTGCGCAATGGGATCTGCGTCTGTTTCTGTCTT
AGATGTTCAACAATTTTTACGCGCGGCTGCGATCGAAGGTAGTCCGGCTC
TCTCCACGTTCCGAAATGCCTGTGAACTAGACGACCACGGTAACTACGCT
GAGCTTCGGGCGGTTCTCGGGAAGAACGAACAGCGAGATCTTTGCCAGGT
TTTGTTCGAAAGCTCTCAGCTTGTTGTTCGAAAAGGCAGAGTCAGCCTCA
AATTGCTCCAAACGAGTGCTGACGGGGGCTTAAAATTGTCGGTAACTCTC
GGGTATCCCGATGAGGTGTCGCGCTGTGTACCAAGTCATTGTCAACCAAA
CTCAACGGCTACGGAGGAGCAATGCATTCCGGGCAAGGCCGGCGCGGACG
ATGCCGCTATGGCTGGGGGGCGTCCCGAAGACGTTGCCATAACGACGTCC
ACAAGAGGTTTGGAAGCACATGCGGGTGTGCCTCATCAATATTGTGGGGC
GAATGCTGCCAGCAGTGGTGGTGCTGGAGAAAGATCTGTCGCGTTCGACG
CTGTTCGAAATAACCCAAACCTATGTTTGACTGGGTCGATTCGAACGCTC
GAGGCTGAAAGAAAAACGATCGACGGGGCTGCTGAATCGGGCGACGACTT
TGTAGAAGAGGATACCGAGGAATAAGAGAAGGATCAAAGTTTCAAAATAT
ATTGGCAGTTCTCGACCCTTCATGGAGTGAGTTAAGTTGTAGTGGACTAT
ACCATGTATTCATATTAATAGTTAATAGAGTACGGTGATAGGCACGTAAC
AGCGGCAGTGATGTGTAATATTCGGCACGATGTTAGCATAATTTTAGGGT
TAGCGCAAAGACACC

Coding sequence (CDS) from alignment at F-serratus_M_contig1122:185859..189123+

>mRNA_F-serratus_M_contig1122.1130.1 ID=mRNA_F-serratus_M_contig1122.1130.1|Name=mRNA_F-serratus_M_contig1122.1130.1|organism=Fucus serratus male|type=CDS|length=1974bp|location=Sequence derived from alignment at F-serratus_M_contig1122:185859..189123+ (Fucus serratus male)
ATGCTCAGCTCGAAAAAAGGTAACCTATTGTGCTTCCAGTGGGAGATCGA
GCGGTTCCAGCGAATCCATAGAGAGAAAATAGCGAACGCGACCGCGCAGA
CCAAAGTGAAACGAGCCTCACCCCGATCCAGGAGAGACCGCCTGCACAAG
TCTGCAAAGGATAAGCAGGTTGAAGCCGATGTCAAGCTTCATAATGCCTT
CCTCTTGGAAAAAATGGCTCACGTTCACCAACTTGGCGGCTGCCAGCAGA
GATGCTCAGCTCGAAAAAAGGTAACCTATTGTGCTTCCAGTGGGAGATCG
AGCGGTTCCAGCGAATCCATAGAGAGAAAATAGCGAACGCGACCGCGCAG
ACCAAAGTGAAACGAGCCTCACCCCGATCCAGGAGAGACCGCCTGCACAA
GTCTGCAAAGGATAAGCAGGTTGAAGCCGATGTCAAGCTTCATAATGCCT
TCCTCTTGGAAAAAATGGCTCACGTTCACCAACTTGGCGGCTGCCAGCAG
AGGGCTCAACATGAGTTCCAAAACATCAAAGCGCCTTTACCCTTTGGGAG
AGCTAACAAAAACGTGGCTCGAGCAGTGCACGAAGGCAGGGCTCAACATG
AGTTCCAAAACATCAAAGCGCCTTTACCCTTTGGGAGAGCTAACAAAAAC
GTGGCTCGAGCAGTGCACGAAGGCAGGTTCACCGCAAGGAGGAAAGAACA
CGAGCGTGTTCGAAGAGCGAATGCGACGATGATCATACGCCTGGTTCACC
GCAAGGAGGAAAGAACACGAGCGTGTTCGAAGAGCGAATGCGACGATGAT
CATACGCCTGGCAAGCCCTATCAGGAGCGAAATCGATTTCAACAAATTCG
AGATCGACTTCGTCAAGAGCCGTGTCCATCTCCGCATGGCTCAATGCAAC
CACACCATAGGACACACATCCATATTGGACGCTGTATCGACTCGGACTCC
GCATTCCGAAGCGGATGTCTCTTACAGCGGAAAGCCACAGTGCCAAATAC
CTAAAGAAGCATTGACAGGCGACGCGCGCCCACCAGGACGTCCTACAAAA
ATGCAGGGGCACAAAGGGCGACCAGGGTTTTCACGGCAGTTAAAATCGAG
GCAACGACCTTTCTCCGCGGGGTTTGTCCCACGTCGTCCACATGATGACA
CGGGTAAAAATCGAAGCACTGGCCACATAATAAAAGCCTGGATCAACCAA
TCCCTTTACGACAAGGCTCCAAGCGATAGCGTTGAAGATCAAATATCAAT
GCCTAGTGGACCTGAAAGGGGAACCAAGCTTCATCGTCACCTGCCAGCAC
ATCGGCCTCACACCGCCCTGGGATTGCGTCGGGGCAAAGACCATAACGAC
TTTTTTTATACGCGCGCCGCCGATCCAGGATGGGGGGGATAAGCAAGCCC
TATCAGGAGCGAAATCGATTTCAACAAATTCGAGATCGACTTCGTCAAGA
GCCGTGTCCATCTCCGCATGGCTCAATGCAACCACACCATAGGACACACA
TCCATATTGGACGCTGTATCGACTCGGACTCCGCATTCCGAAGCGGATGT
CTCTTACAGCGGAAAGCCACAGTGCCAAATACCTAAAGAAGCATTGACAG
GCGACGCGCGCCCACCAGGACGTCCTACAAAAATGCAGGGGCACAAAGGG
CGACCAGGGTTTTCACGGCAGTTAAAATCGAGGCAACGACCTTTCTCCGC
GGGGTTTGTCCCACGTCGTCCACATGATGACACGGGTAAAAATCGAAGCA
CTGGCCACATAATAAAAGCCTGGATCAACCAATCCCTTTACGACAAGGCT
CCAAGCGATAGCGTTGAAGATCAAATATCAATGCCTAGTGGACCTGAAAG
GGGAACCAAGCTTCATCGTCACCTGCCAGCACATCGGCCTCACACCGCCC
TGGGATTGCGTCGGGGCAAAGACCATAACGACTTTTTTTATACGCGCGCC
GCCGATCCAGGATGGGGGGGATAA