mRNA_F-serratus_M_contig1108.1014.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1108.1014.1
Unique NamemRNA_F-serratus_M_contig1108.1014.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1108.1014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1108contigF-serratus_M_contig1108:205465..207098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size879
Cds size468
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1108.1014.1prot_F-serratus_M_contig1108.1014.1Fucus serratus malepolypeptideF-serratus_M_contig1108 205465..206688 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928986.3394043-CDS-F-serratus_M_contig1108:205464..2059221622928986.3394043-CDS-F-serratus_M_contig1108:205464..205922Fucus serratus maleCDSF-serratus_M_contig1108 205465..205922 +
1690962656.9610987-CDS-F-serratus_M_contig1108:205464..2059221690962656.9610987-CDS-F-serratus_M_contig1108:205464..205922Fucus serratus maleCDSF-serratus_M_contig1108 205465..205922 +
1622928986.3562243-CDS-F-serratus_M_contig1108:206678..2066881622928986.3562243-CDS-F-serratus_M_contig1108:206678..206688Fucus serratus maleCDSF-serratus_M_contig1108 206679..206688 +
1690962656.9706962-CDS-F-serratus_M_contig1108:206678..2066881690962656.9706962-CDS-F-serratus_M_contig1108:206678..206688Fucus serratus maleCDSF-serratus_M_contig1108 206679..206688 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928986.3720565-UTR-F-serratus_M_contig1108:206688..2070981622928986.3720565-UTR-F-serratus_M_contig1108:206688..207098Fucus serratus maleUTRF-serratus_M_contig1108 206689..207098 +
1690962656.9800355-UTR-F-serratus_M_contig1108:206688..2070981690962656.9800355-UTR-F-serratus_M_contig1108:206688..207098Fucus serratus maleUTRF-serratus_M_contig1108 206689..207098 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1108.1014.1

>prot_F-serratus_M_contig1108.1014.1 ID=prot_F-serratus_M_contig1108.1014.1|Name=mRNA_F-serratus_M_contig1108.1014.1|organism=Fucus serratus male|type=polypeptide|length=156bp
CYRRACLPCLGFEFPGLGRVCCGGGAQLGYSGVDALRLARDIATSPRILL
PPDIIDKTLTLCDAVRWAYNSGMDRPWFAKNIRHTQEAAGRKPLRRTNST
TSDSSVEVLRQRPREDPSSGRGKSKRVMTALTSDSDSGSETFHGHDRGSR
HLGKG*
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mRNA from alignment at F-serratus_M_contig1108:205465..207098+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1108.1014.1 ID=mRNA_F-serratus_M_contig1108.1014.1|Name=mRNA_F-serratus_M_contig1108.1014.1|organism=Fucus serratus male|type=mRNA|length=1634bp|location=Sequence derived from alignment at F-serratus_M_contig1108:205465..207098+ (Fucus serratus male)
TGTTATCGCCGCGCGTGCCTTCCGTGCCTGGGGTTCGAGTTCCCGGGCTT
GGGCAGAGTCTGCTGCGGCGGAGGCGCACAGCTTGGATATTCGGGCGTCG
ATGCCCTTCGCCTCGCTAGAGATATTGCGACCAGCCCGCGCATCCTCCTT
CCCCCGGACATTATCGACAAGACCCTCACTCTGTGCGACGCGGTCCGGTG
GGCGTACAATTCCGGCATGGACCGCCCTTGGTTTGCCAAGAATATACGCC
ACACCCAAGAAGCTGCTGGACGGAAACCCTTGCGCCGGACCAACTCCACC
ACGAGCGACTCCTCGGTCGAGGTCCTCCGGCAACGTCCGAGGGAGGACCC
CTCGAGCGGACGGGGGAAAAGCAAACGGGTGATGACCGCACTCACATCAG
ACAGCGACTCGGGCTCGGAGACTTTCCACGGCCACGACCGCGGCTCTCGG
CATTTGGGGCAAGTACCGCGTTTTTACCATGTACCAGACCCCAACGATGG
GTCAGACCCACCGTTCCCACCGCGGATAGCTCGCAACAGTACCGTATGCC
GACCAAACCCCCCGCGTCCGCGGTTAACGGACACACCGACGCTGGAGATA
CACGCCCCCCGTACAAACATTTCACTAAATGAGGATTTTTCCCCTCCCAC
AACGAACATATTAGTTGAGACGATAACTAGCGCGGCCCTTGCTGCTGTAA
ATCAGTACCTCGCGAATCTTGGTCTTTTGCCGAACACCACCCTTAACTCA
CAACTGCCAGTGCCCCCTCAAGCGAGGAACACACTGGATGCCTCCAACCC
AGCACAGCTTTCTGCCCCCGCTTCGGATCCTCTTAGCCACGTACAAGATG
GTAGACCGCCTCACTGCTCAATTAATACTCCACCGTACGAATTTGACCAC
GTCTTTACGAAGAGAATGCAAGCTGAATACCGTACGCTAGACACTCGCCG
CGTTCCGAGAGTACAGCCCCTACAATTTTCTCCGCATAGCGACAGAACAT
CGGCTACACAACTCCTTGTGAATTCAATGCGTGATGCCCTATCCGGCATT
TTTGACGTGGCTGATCCATCGGGGTTGTCACATTGCGATCTCCCAATTGG
GTTCCCGGTTGGCACGCGCCACTTCTGAAACTCACGAAAGCCTCAATAAT
GGCAAATCGTGACGACACCCACTCCCTGCACCGCCTGATCGATGACCTCT
TCGCCCAACTACAGGAAAGGTTAGCCTCCGGCGTGGACGGGCCGACGGCG
TTCAGGACCCTTTTGATCGACGTCACCGACTACTTCGATCGAGCACCACG
GGGCGCTGCTTTAGAAACTTTACAGAAATTTGGTGTAACCTCCGGGACGC
CTTTTTCGAGCTACTTGCGTTCATTTAGAGTTGTTGTAGCAAGTACTGTA
GACAAAGGAGGACACCTCGCGCCATCGCCAGAAATGGCGATGGAACTCAT
CCATATCCGTACAGCGCAGCAGTATCCGATGTTGATGCCAACCTTGTTCC
CGTGAAGTTTAGCTACACGAGAGAAGCCGTATGACTCACTAGCAACGTTG
TGGACTGTTTTTGCGAATTTAAAACACAACACTTCACCGGCTATCGATGG
CGACCTTTTTGCCACCGTCCCTCAGAGCTCGAAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1108:205465..207098+

>mRNA_F-serratus_M_contig1108.1014.1 ID=mRNA_F-serratus_M_contig1108.1014.1|Name=mRNA_F-serratus_M_contig1108.1014.1|organism=Fucus serratus male|type=CDS|length=936bp|location=Sequence derived from alignment at F-serratus_M_contig1108:205465..207098+ (Fucus serratus male)
TGTTATCGCCGCGCGTGCCTTCCGTGCCTGGGGTTCGAGTTCCCGGGCTT
GGGCAGAGTCTGCTGCGGCGGAGGCGCACAGCTTGGATATTCGGGCGTCG
ATGCCCTTCGCCTCGCTAGAGATATTGCGACCAGCCCGCGCATCCTCCTT
CCCCCGGACATTATCGACAAGACCCTCACTCTGTGCGACGCGGTCCGGTG
GGCGTACAATTCCGGCATGGACCGCCCTTGGTTTGCCAAGAATATACGCC
ACACCCAAGAAGCTGCTGGACGGAAACCCTTGCGCCGGACCAACTCCACC
ACGAGCGACTCCTCGGTCGAGGTCCTCCGGCAACGTCCGAGGGAGGACCC
CTCGAGCGGACGGGGGAAAAGCAAACGGGTGATGACCGCACTCACATCAG
ACAGCGACTCGGGCTCGGAGACTTTCCACGGCCACGACCGCGGCTCTCGG
CATTTGGGTGTTATCGCCGCGCGTGCCTTCCGTGCCTGGGGTTCGAGTTC
CCGGGCTTGGGCAGAGTCTGCTGCGGCGGAGGCGCACAGCTTGGATATTC
GGGCGTCGATGCCCTTCGCCTCGCTAGAGATATTGCGACCAGCCCGCGCA
TCCTCCTTCCCCCGGACATTATCGACAAGACCCTCACTCTGTGCGACGCG
GTCCGGTGGGCGTACAATTCCGGCATGGACCGCCCTTGGTTTGCCAAGAA
TATACGCCACACCCAAGAAGCTGCTGGACGGAAACCCTTGCGCCGGACCA
ACTCCACCACGAGCGACTCCTCGGTCGAGGTCCTCCGGCAACGTCCGAGG
GAGGACCCCTCGAGCGGACGGGGGAAAAGCAAACGGGTGATGACCGCACT
CACATCAGACAGCGACTCGGGCTCGGAGACTTTCCACGGCCACGACCGCG
GCTCTCGGCATTTGGGGAAAGGTTAGGAAAGGTTAG
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