mRNA_F-serratus_M_contig1106.1002.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1106.1002.1
Unique NamemRNA_F-serratus_M_contig1106.1002.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1106.1002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1106contigF-serratus_M_contig1106:299967..300278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size312
Cds size312
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928982.1086614-CDS-F-serratus_M_contig1106:299966..3002781622928982.1086614-CDS-F-serratus_M_contig1106:299966..300278Fucus serratus maleCDSF-serratus_M_contig1106 299967..300278 +
1690962655.0890274-CDS-F-serratus_M_contig1106:299966..3002781690962655.0890274-CDS-F-serratus_M_contig1106:299966..300278Fucus serratus maleCDSF-serratus_M_contig1106 299967..300278 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1106.1002.1prot_F-serratus_M_contig1106.1002.1Fucus serratus malepolypeptideF-serratus_M_contig1106 299967..300278 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1106.1002.1

>prot_F-serratus_M_contig1106.1002.1 ID=prot_F-serratus_M_contig1106.1002.1|Name=mRNA_F-serratus_M_contig1106.1002.1|organism=Fucus serratus male|type=polypeptide|length=104bp
MDLTAQRAIVELGRAVENDFSWRSSFPELADIKTAILKDLWDHMESFSQG
LQQAVWDVLQNLVRATLFKTQRKCWSGHESVINVKISKADFPSWSALIET
WGTG
back to top

mRNA from alignment at F-serratus_M_contig1106:299967..300278+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1106.1002.1 ID=mRNA_F-serratus_M_contig1106.1002.1|Name=mRNA_F-serratus_M_contig1106.1002.1|organism=Fucus serratus male|type=mRNA|length=312bp|location=Sequence derived from alignment at F-serratus_M_contig1106:299967..300278+ (Fucus serratus male)
ATGGATCTGACAGCCCAGAGAGCCATCGTGGAGCTAGGTCGAGCCGTGGA
AAATGATTTTTCCTGGAGGAGCAGCTTCCCGGAGCTGGCGGACATCAAAA
CAGCTATTCTGAAGGACCTATGGGATCACATGGAGAGCTTTTCCCAAGGA
CTGCAACAGGCAGTCTGGGATGTACTGCAGAATTTAGTCCGTGCGACCCT
CTTTAAAACACAGAGAAAATGTTGGTCGGGACACGAATCGGTCATAAACG
TGAAAATTTCCAAAGCAGATTTTCCGTCGTGGTCAGCTCTAATCGAGACA
TGGGGTACTGGG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1106:299967..300278+

>mRNA_F-serratus_M_contig1106.1002.1 ID=mRNA_F-serratus_M_contig1106.1002.1|Name=mRNA_F-serratus_M_contig1106.1002.1|organism=Fucus serratus male|type=CDS|length=624bp|location=Sequence derived from alignment at F-serratus_M_contig1106:299967..300278+ (Fucus serratus male)
ATGGATCTGACAGCCCAGAGAGCCATCGTGGAGCTAGGTCGAGCCGTGGA
AAATGATTTTTCCTGGAGGAGCAGCTTCCCGGAGCTGGCGGACATCAAAA
CAGCTATTCTGAAGGACCTATGGGATCACATGGAGAGCTTTTCCCAAGGA
CTGCAACAGGCAGTCTGGGATGTACTGCAGAATTTAGTCCGTGCGACCCT
CTTTAAAACACAGAGAAAATGTTGGTCGGGACACGAATCGGTCATAAACG
TGAAAATTTCCAAAGCAGATTTTCCGTCGTGGTCAGCTCTAATCGAGACA
TGGGGTACTGGGATGGATCTGACAGCCCAGAGAGCCATCGTGGAGCTAGG
TCGAGCCGTGGAAAATGATTTTTCCTGGAGGAGCAGCTTCCCGGAGCTGG
CGGACATCAAAACAGCTATTCTGAAGGACCTATGGGATCACATGGAGAGC
TTTTCCCAAGGACTGCAACAGGCAGTCTGGGATGTACTGCAGAATTTAGT
CCGTGCGACCCTCTTTAAAACACAGAGAAAATGTTGGTCGGGACACGAAT
CGGTCATAAACGTGAAAATTTCCAAAGCAGATTTTCCGTCGTGGTCAGCT
CTAATCGAGACATGGGGTACTGGG
back to top